diff options
| author | pgj <pgj@FreeBSD.org> | 2012-02-13 13:20:41 +0800 |
|---|---|---|
| committer | pgj <pgj@FreeBSD.org> | 2012-02-13 13:20:41 +0800 |
| commit | aff31ba4a5daf317f3b30556d0096237dff6c37c (patch) | |
| tree | 40e452c3a4a8167ce7f2b6de7b7602d24590bafa /science | |
| parent | fc7b68dda52e77574574155ece822e01f0ae764a (diff) | |
| download | freebsd-ports-gnome-aff31ba4a5daf317f3b30556d0096237dff6c37c.tar.gz freebsd-ports-gnome-aff31ba4a5daf317f3b30556d0096237dff6c37c.tar.zst freebsd-ports-gnome-aff31ba4a5daf317f3b30556d0096237dff6c37c.zip | |
- Update to 0.5.1
Obtained from: FreeBSD Haskell
Diffstat (limited to 'science')
| -rw-r--r-- | science/hs-bio/Makefile | 6 | ||||
| -rw-r--r-- | science/hs-bio/distinfo | 4 | ||||
| -rw-r--r-- | science/hs-bio/files/patch-bio.cabal | 6 | ||||
| -rw-r--r-- | science/hs-bio/files/patch-examples__RSelectPE.hs | 8 | ||||
| -rw-r--r-- | science/hs-bio/pkg-descr | 2 |
5 files changed, 16 insertions, 10 deletions
diff --git a/science/hs-bio/Makefile b/science/hs-bio/Makefile index 4af48ccdc898..7a5d97672cd8 100644 --- a/science/hs-bio/Makefile +++ b/science/hs-bio/Makefile @@ -6,7 +6,7 @@ # PORTNAME= bio -PORTVERSION= 0.5.0.1 +PORTVERSION= 0.5.1 CATEGORIES= science haskell MAINTAINER= haskell@FreeBSD.org @@ -17,9 +17,7 @@ LICENSE= LGPL21 CABAL_SETUP= Setup.hs USE_CABAL= binary>=0.4 mtl parallel parsec QuickCheck>=2 tagsoup>=0.8 -EXECUTABLE= fastout flx frecover frename - -PORTDATA= * +EXECUTABLE= fastout flx frecover frename flowclip orf rselect-pe .include "${.CURDIR}/../../lang/ghc/bsd.cabal.mk" .include <bsd.port.mk> diff --git a/science/hs-bio/distinfo b/science/hs-bio/distinfo index ad7fee4a7456..793e98b3825f 100644 --- a/science/hs-bio/distinfo +++ b/science/hs-bio/distinfo @@ -1,2 +1,2 @@ -SHA256 (cabal/bio-0.5.0.1.tar.gz) = 0bb62961c38c4437fcfaaf08922d16a967681a3d244d4a9fc414538050cf662b -SIZE (cabal/bio-0.5.0.1.tar.gz) = 100323 +SHA256 (cabal/bio-0.5.1.tar.gz) = 256e1b34fc0c7fd21b3ec36e1e3903bed2afc56b6a819f26d8368dbea21561a9 +SIZE (cabal/bio-0.5.1.tar.gz) = 103846 diff --git a/science/hs-bio/files/patch-bio.cabal b/science/hs-bio/files/patch-bio.cabal index 0dc3382c45dd..c34a3277d73c 100644 --- a/science/hs-bio/files/patch-bio.cabal +++ b/science/hs-bio/files/patch-bio.cabal @@ -1,11 +1,11 @@ ---- ./bio.cabal.orig 2011-01-26 15:07:16.000000000 +0100 -+++ ./bio.cabal 2011-03-13 15:52:53.711304695 +0100 +--- ./bio.cabal.orig 2011-12-15 12:56:28.000000000 +0100 ++++ ./bio.cabal 2011-12-17 11:02:26.000000000 +0100 @@ -38,7 +38,7 @@ Default: True Library - Build-Depends: base>=4 && <5, binary >=0.4 && <0.5, tagsoup>=0.8, bytestring >= 0.9.1, + Build-Depends: base>=4 && <5, binary >=0.4, tagsoup>=0.8, bytestring >= 0.9.1, - containers, array, parallel, parsec, mtl, directory + containers, array, parallel, parsec, mtl, directory, QuickCheck >= 2 Exposed-modules: Bio.Sequence, diff --git a/science/hs-bio/files/patch-examples__RSelectPE.hs b/science/hs-bio/files/patch-examples__RSelectPE.hs new file mode 100644 index 000000000000..6ca244b9f7c4 --- /dev/null +++ b/science/hs-bio/files/patch-examples__RSelectPE.hs @@ -0,0 +1,8 @@ +--- ./examples/RSelectPE.hs.orig 2011-12-15 12:56:28.000000000 +0100 ++++ ./examples/RSelectPE.hs 2011-12-17 11:46:58.000000000 +0100 +@@ -1,5 +1,3 @@ +-{- | Randomly select paired end (illumina) reads -} +- + import System.Environment (getArgs) + import Data.List (isSuffixOf) + import System.Random diff --git a/science/hs-bio/pkg-descr b/science/hs-bio/pkg-descr index a43395813f95..91946cc0ba3f 100644 --- a/science/hs-bio/pkg-descr +++ b/science/hs-bio/pkg-descr @@ -4,4 +4,4 @@ for building bioinformatics-related tools and utilities. Current list of features includes: a Sequence data type supporting protein and nucleotide sequences and conversion between them. -WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/ +WWW: http://biohaskell.org/Libraries/Bio |