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authoryuri <yuri@FreeBSD.org>2018-07-08 07:32:57 +0800
committeryuri <yuri@FreeBSD.org>2018-07-08 07:32:57 +0800
commit27595c25f81879ca7ed9adb5599b48c31987fa59 (patch)
tree450029d96f6fdb2639f529d2f8bed56f9eae27c4 /science
parent3691be3a6590228de6cea58499935fd19c44404f (diff)
downloadfreebsd-ports-gnome-27595c25f81879ca7ed9adb5599b48c31987fa59.tar.gz
freebsd-ports-gnome-27595c25f81879ca7ed9adb5599b48c31987fa59.tar.zst
freebsd-ports-gnome-27595c25f81879ca7ed9adb5599b48c31987fa59.zip
New port: science/mmdb2: C++ toolkit for working with macromolecular coordinate files
Diffstat (limited to 'science')
-rw-r--r--science/Makefile1
-rw-r--r--science/mmdb2/Makefile21
-rw-r--r--science/mmdb2/distinfo3
-rw-r--r--science/mmdb2/pkg-descr15
-rw-r--r--science/mmdb2/pkg-plist38
5 files changed, 78 insertions, 0 deletions
diff --git a/science/Makefile b/science/Makefile
index 348b02f86a5f..985a4e52924a 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -115,6 +115,7 @@
SUBDIR += metaf2xml
SUBDIR += metaphysicl
SUBDIR += minc2
+ SUBDIR += mmdb2
SUBDIR += mol2ps
SUBDIR += mpb
SUBDIR += mpqc
diff --git a/science/mmdb2/Makefile b/science/mmdb2/Makefile
new file mode 100644
index 000000000000..d6dab83a5a8f
--- /dev/null
+++ b/science/mmdb2/Makefile
@@ -0,0 +1,21 @@
+# $FreeBSD$
+
+PORTNAME= mmdb2
+DISTVERSION= 2.0.12
+CATEGORIES= science
+MASTER_SITES= https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/
+
+MAINTAINER= yuri@FreeBSD.org
+COMMENT= C++ toolkit for working with macromolecular coordinate files
+
+LICENSE= GPLv3 LGPL3
+LICENSE_COMB= dual
+LICENSE_FILE_GPLv3= ${WRKSRC}/COPYING
+LICENSE_FILE_LGPL3= ${WRKSRC}/COPYING.LESSER
+
+USES= gmake libtool
+GNU_CONFIGURE= yes
+CONFIGURE_ARGS= --enable-shared --disable-static
+USE_LDCONFIG= yes
+
+.include <bsd.port.mk>
diff --git a/science/mmdb2/distinfo b/science/mmdb2/distinfo
new file mode 100644
index 000000000000..e48ccdfa0037
--- /dev/null
+++ b/science/mmdb2/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1531005594
+SHA256 (mmdb2-2.0.12.tar.gz) = a24fca06266c6b4db06ad1e0e0ddf5037f2ea624347ab119a6b163d8929c62a0
+SIZE (mmdb2-2.0.12.tar.gz) = 723975
diff --git a/science/mmdb2/pkg-descr b/science/mmdb2/pkg-descr
new file mode 100644
index 000000000000..ee2230d4e694
--- /dev/null
+++ b/science/mmdb2/pkg-descr
@@ -0,0 +1,15 @@
+MMDB is designed to assist developers in working with macromolecular coordinate
+files. The library handles both PDB and mmCIF format files.
+
+The Library also features an internal binary format, portable between different
+platforms. This is achieved at uniformity of the Library's interface functions,
+so that there is no difference in handling different formats.
+
+MMDB provides various high-level tools for working with coordinate files,
+including reading and writing, orthogonal-fractional transforms, generation of
+symmetry mates, editing the molecular structure and more.
+
+MMDB is written by Eugene Krissinel, and is distributed as a part of the CCP4
+suite. This project maintains a current stand-alone version of the library.
+
+WWW: https://launchpad.net/mmd
diff --git a/science/mmdb2/pkg-plist b/science/mmdb2/pkg-plist
new file mode 100644
index 000000000000..3ec779907e60
--- /dev/null
+++ b/science/mmdb2/pkg-plist
@@ -0,0 +1,38 @@
+include/mmdb2/hybrid_36.h
+include/mmdb2/mmdb_atom.h
+include/mmdb2/mmdb_bondmngr.h
+include/mmdb2/mmdb_chain.h
+include/mmdb2/mmdb_cifdefs.h
+include/mmdb2/mmdb_coormngr.h
+include/mmdb2/mmdb_cryst.h
+include/mmdb2/mmdb_defs.h
+include/mmdb2/mmdb_ficif.h
+include/mmdb2/mmdb_io_file.h
+include/mmdb2/mmdb_io_stream.h
+include/mmdb2/mmdb_machine_.h
+include/mmdb2/mmdb_manager.h
+include/mmdb2/mmdb_mask.h
+include/mmdb2/mmdb_math_.h
+include/mmdb2/mmdb_math_align.h
+include/mmdb2/mmdb_math_bfgsmin.h
+include/mmdb2/mmdb_math_fft.h
+include/mmdb2/mmdb_math_graph.h
+include/mmdb2/mmdb_math_linalg.h
+include/mmdb2/mmdb_math_rand.h
+include/mmdb2/mmdb_mattype.h
+include/mmdb2/mmdb_mmcif_.h
+include/mmdb2/mmdb_model.h
+include/mmdb2/mmdb_root.h
+include/mmdb2/mmdb_rwbrook.h
+include/mmdb2/mmdb_selmngr.h
+include/mmdb2/mmdb_seqsuperpose.h
+include/mmdb2/mmdb_symop.h
+include/mmdb2/mmdb_tables.h
+include/mmdb2/mmdb_title.h
+include/mmdb2/mmdb_uddata.h
+include/mmdb2/mmdb_utils.h
+include/mmdb2/mmdb_xml_.h
+lib/libmmdb2.so
+lib/libmmdb2.so.0
+lib/libmmdb2.so.0.0.0
+libdata/pkgconfig/mmdb2.pc