Remove science/orthanc and dependent ports, it has expired

16 files changed, 0 insertions, 375 deletions

diff --git a/science/Makefile b/science/Makefile
index a595fa444119..775b586db71e 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -122,10 +122,6 @@
     SUBDIR += nifticlib
     SUBDIR += openbabel
     SUBDIR += openkim
-    SUBDIR += orthanc
-    SUBDIR += orthanc-dicomweb
-    SUBDIR += orthanc-postgresql
-    SUBDIR += orthanc-webviewer
     SUBDIR += p5-Algorithm-SVMLight
     SUBDIR += p5-Chemistry-3DBuilder
     SUBDIR += p5-Chemistry-Bond-Find
diff --git a/science/orthanc-dicomweb/Makefile b/science/orthanc-dicomweb/Makefile
deleted file mode 100644
index 20ba8d4ef54f..000000000000
--- a/science/orthanc-dicomweb/Makefile
+++ /dev/null
@@ -1,43 +0,0 @@
-# Created by: mp39590@gmail.com
-# $FreeBSD$
-
-PORTNAME=	orthanc-dicomweb
-PORTVERSION=	0.4
-PORTREVISION=	4
-CATEGORIES=	science net
-MASTER_SITES=	http://orthanc-server.com/downloads/get.php?path=/plugin-dicom-web/
-DISTNAME=	OrthancDicomWeb-${PORTVERSION}
-DIST_SUBDIR=	orthanc
-
-MAINTAINER=	mp39590@gmail.com
-COMMENT=	WADO and DICOMweb support for Orthanc
-
-LICENSE=	AGPLv3
-LICENSE_FILE=	${WRKSRC}/COPYING
-
-BUILD_DEPENDS=	${LOCALBASE}/include/orthanc/OrthancCPlugin.h:science/orthanc
-LIB_DEPENDS=	libgdcmCommon.so:devel/gdcm \
-		libboost_filesystem.so:devel/boost-libs \
-		libboost_thread.so:devel/boost-libs \
-		libboost_system.so:devel/boost-libs \
-		libboost_date_time.so:devel/boost-libs \
-		libboost_regex.so:devel/boost-libs \
-		libboost_locale.so:devel/boost-libs \
-		libjsoncpp.so:devel/jsoncpp \
-		libuuid.so:misc/e2fsprogs-libuuid \
-		libpugixml.so:textproc/pugixml \
-		libgtest.so:devel/googletest
-
-USES=		cmake:outsource localbase python:build
-WRKSRC=		${WRKDIR}/OrthancDicomWeb-${PORTVERSION}
-
-PLIST_FILES=	share/orthanc/plugins/libOrthancDicomWeb.so \
-		share/orthanc/plugins/libOrthancDicomWeb.so.${PORTVERSION}
-
-post-patch:
-	@${REINPLACE_CMD} -e 's|/usr/local|${LOCALBASE}|g' ${WRKSRC}/Orthanc/Resources/CMake/*.cmake
-
-do-test:
-	@cd ${BUILD_WRKSRC} && ./UnitTests
-
-.include <bsd.port.mk>
diff --git a/science/orthanc-dicomweb/distinfo b/science/orthanc-dicomweb/distinfo
deleted file mode 100644
index cba434945410..000000000000
--- a/science/orthanc-dicomweb/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-TIMESTAMP = 1503168795
-SHA256 (orthanc/OrthancDicomWeb-0.4.tar.gz) = 84963f45e496fcd028fdbc3219bca250fb8b95e07a886dda8942111df77ffd26
-SIZE (orthanc/OrthancDicomWeb-0.4.tar.gz) = 156133
diff --git a/science/orthanc-dicomweb/pkg-descr b/science/orthanc-dicomweb/pkg-descr
deleted file mode 100644
index 3d1936f55270..000000000000
--- a/science/orthanc-dicomweb/pkg-descr
+++ /dev/null
@@ -1,4 +0,0 @@
-This plugin extends the RESTful API of Orthanc with WADO and DICOMweb
-support.
-
-WWW: http://www.orthanc-server.com/
diff --git a/science/orthanc-postgresql/Makefile b/science/orthanc-postgresql/Makefile
deleted file mode 100644
index aebddf46b3d8..000000000000
--- a/science/orthanc-postgresql/Makefile
+++ /dev/null
@@ -1,39 +0,0 @@
-# Created by: mp39590@gmail.com
-# $FreeBSD$
-
-PORTNAME=	orthanc-portgresql
-PORTVERSION=	2.0
-PORTREVISION=	8
-CATEGORIES=	science graphics
-MASTER_SITES=	http://orthanc-server.com/downloads/get.php?path=/plugin-postgresql/
-DISTNAME=	OrthancPostgreSQL-${PORTVERSION}
-DIST_SUBDIR=	orthanc
-
-MAINTAINER=	mp39590@gmail.com
-COMMENT=	PostgreSQL plugin for Orthanc
-
-LICENSE=	AGPLv3
-LICENSE_FILE=	${WRKSRC}/COPYING
-
-BUILD_DEPENDS=	orthanc>=0.9.4:science/orthanc
-LIB_DEPENDS=	libboost_system.so:devel/boost-libs \
-		libjsoncpp.so:devel/jsoncpp
-
-## UnitTests require running PostgreSQL server, so it's pointless to build/run them
-CMAKE_ARGS=	-DBUILD_UNIT_TESTS=OFF
-
-CXXFLAGS+=	-I${LOCALBASE}/include
-LDFLAGS+=	-L${LOCALBASE}/lib
-
-USES=		cmake:outsource pgsql python:build
-WRKSRC=		${WRKDIR}/OrthancPostgreSQL-${PORTVERSION}
-
-PLIST_FILES=	share/orthanc/plugins/libOrthancPostgreSQLIndex.so \
-		share/orthanc/plugins/libOrthancPostgreSQLIndex.so.${PORTVERSION} \
-		share/orthanc/plugins/libOrthancPostgreSQLStorage.so \
-		share/orthanc/plugins/libOrthancPostgreSQLStorage.so.${PORTVERSION}
-
-post-extract:
-	@${REINPLACE_CMD} -e 's|/usr/local|${LOCALBASE}|g' ${WRKSRC}/Resources/CMake/*.cmake
-
-.include <bsd.port.mk>
diff --git a/science/orthanc-postgresql/distinfo b/science/orthanc-postgresql/distinfo
deleted file mode 100644
index 2cf39b4682ec..000000000000
--- a/science/orthanc-postgresql/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (orthanc/OrthancPostgreSQL-2.0.tar.gz) = d9ef74b016ac89e8e298ab6e5e98a9b4831c198377e254c231309c12f52c378d
-SIZE (orthanc/OrthancPostgreSQL-2.0.tar.gz) = 99020
diff --git a/science/orthanc-postgresql/pkg-descr b/science/orthanc-postgresql/pkg-descr
deleted file mode 100644
index 78b856494f60..000000000000
--- a/science/orthanc-postgresql/pkg-descr
+++ /dev/null
@@ -1,4 +0,0 @@
-The plugin replaces the default SQLite engine of Orthanc with a
-PostgreSQL back-end.
-
-WWW: http://www.orthanc-server.com/
diff --git a/science/orthanc-webviewer/Makefile b/science/orthanc-webviewer/Makefile
deleted file mode 100644
index 3013d6ac5c3e..000000000000
--- a/science/orthanc-webviewer/Makefile
+++ /dev/null
@@ -1,55 +0,0 @@
-# Created by: mp39590@gmail.com
-# $FreeBSD$
-
-PORTNAME=	orthanc-webviewer
-PORTVERSION=	2.3
-PORTREVISION=	4
-CATEGORIES=	science graphics
-MASTER_SITES=	http://orthanc-server.com/downloads/get.php?path=/plugin-webviewer/:main \
-		http://www.orthanc-server.com/downloads/third-party/WebViewer/:thirdparty
-DISTFILES=	OrthancWebViewer-${PORTVERSION}.tar.gz:main \
-		jsPanel-2.3.3-fixed.zip:thirdparty \
-		cornerstone-0.11.0.zip:thirdparty \
-		jquery-ui-1.11.3.zip:thirdparty \
-		pako-0.2.5.zip:thirdparty \
-		js-url-1.8.6.zip:thirdparty
-DIST_SUBDIR=	orthanc
-
-MAINTAINER=	mp39590@gmail.com
-COMMENT=	Web viewer plugin for Orthanc
-
-LICENSE=	AGPLv3
-LICENSE_FILE=	${WRKSRC}/COPYING
-
-BUILD_DEPENDS=	${LOCALBASE}/include/orthanc/OrthancCPlugin.h:science/orthanc \
-		gtest-config:devel/googletest
-LIB_DEPENDS=	libgdcmCommon.so:devel/gdcm \
-		libboost_system.so:devel/boost-libs \
-		libboost_thread.so:devel/boost-libs \
-		libboost_filesystem.so:devel/boost-libs \
-		libjsoncpp.so:devel/jsoncpp \
-		libsqlite3.so:databases/sqlite3 \
-		libuuid.so:misc/e2fsprogs-libuuid \
-		libgtest.so:devel/googletest
-
-USES=		cmake:outsource localbase python:build
-WRKSRC=		${WRKDIR}/OrthancWebViewer-${PORTVERSION}
-
-PLIST_FILES=	share/orthanc/plugins/libOrthancWebViewer.so \
-		share/orthanc/plugins/libOrthancWebViewer.so.${PORTVERSION}
-
-post-extract:
-	${MKDIR} ${WRKSRC}/ThirdPartyDownloads
-	${CP} ${DISTDIR}/${DIST_SUBDIR}/jsPanel-2.3.3-fixed.zip ${WRKSRC}/ThirdPartyDownloads
-	${CP} ${DISTDIR}/${DIST_SUBDIR}/cornerstone-0.11.0.zip ${WRKSRC}/ThirdPartyDownloads
-	${CP} ${DISTDIR}/${DIST_SUBDIR}/jquery-ui-1.11.3.zip ${WRKSRC}/ThirdPartyDownloads
-	${CP} ${DISTDIR}/${DIST_SUBDIR}/pako-0.2.5.zip ${WRKSRC}/ThirdPartyDownloads
-	${CP} ${DISTDIR}/${DIST_SUBDIR}/js-url-1.8.6.zip ${WRKSRC}/ThirdPartyDownloads
-
-post-patch:
-	@${REINPLACE_CMD} -e 's|/usr/local|${LOCALBASE}|g' ${WRKSRC}/Orthanc/Resources/CMake/*.cmake
-
-post-build:
-	@cd ${BUILD_WRKSRC} && ./UnitTests
-
-.include <bsd.port.mk>
diff --git a/science/orthanc-webviewer/distinfo b/science/orthanc-webviewer/distinfo
deleted file mode 100644
index ae8548d8c7ba..000000000000
--- a/science/orthanc-webviewer/distinfo
+++ /dev/null
@@ -1,13 +0,0 @@
-TIMESTAMP = 1503851520
-SHA256 (orthanc/OrthancWebViewer-2.3.tar.gz) = e9f8b89fb2a63373cccd55267680a953ec49073872dbb8747bc662b4d7955c5e
-SIZE (orthanc/OrthancWebViewer-2.3.tar.gz) = 162475
-SHA256 (orthanc/jsPanel-2.3.3-fixed.zip) = 958a15c7009efbb865da62b5850a3a39661c62696e38b151c7f988f4ac445595
-SIZE (orthanc/jsPanel-2.3.3-fixed.zip) = 826542
-SHA256 (orthanc/cornerstone-0.11.0.zip) = 1bada9f1f2981968f72daa352e712abea5cac3e0417fe59176f70a23261f1da9
-SIZE (orthanc/cornerstone-0.11.0.zip) = 935277
-SHA256 (orthanc/jquery-ui-1.11.3.zip) = 045b52f293bf4f77c6689569064327495edd9e6434839b78a56299c555130282
-SIZE (orthanc/jquery-ui-1.11.3.zip) = 400437
-SHA256 (orthanc/pako-0.2.5.zip) = e493010e1b1af5c149631994365ed31e15722eed2d17cc1d95bd9af151f2005f
-SIZE (orthanc/pako-0.2.5.zip) = 704378
-SHA256 (orthanc/js-url-1.8.6.zip) = ef2c7f50921ba64ac434eacf025669f1e6f39b5584100ffa8194a3edc08d43d3
-SIZE (orthanc/js-url-1.8.6.zip) = 54717
diff --git a/science/orthanc-webviewer/pkg-descr b/science/orthanc-webviewer/pkg-descr
deleted file mode 100644
index c69229a71fea..000000000000
--- a/science/orthanc-webviewer/pkg-descr
+++ /dev/null
@@ -1,7 +0,0 @@
-Web viewer plugin allows easy serial view of medical images stored in
-Orthanc server in a browser, using HTML5 technology.
-Demo: http://youtu.be/ub5IxlVqoOE
-
-The plugin can't be used for diagnostic purposes.
-
-WWW: http://www.orthanc-server.com/
diff --git a/science/orthanc/Makefile b/science/orthanc/Makefile
deleted file mode 100644
index b70da3fb08f1..000000000000
--- a/science/orthanc/Makefile
+++ /dev/null
@@ -1,92 +0,0 @@
-# Created by: mp39590@gmail.com
-# $FreeBSD$
-
-PORTNAME=	orthanc
-PORTVERSION=	1.3.0
-PORTREVISION=	4
-CATEGORIES=	science graphics net www
-MASTER_SITES=	http://orthanc-server.com/downloads/get.php?path=/orthanc/:main \
-		http://www.montefiore.ulg.ac.be/~jodogne/Orthanc/ThirdPartyDownloads/:mongoose
-DISTFILES=	Orthanc-${PORTVERSION}.tar.gz:main \
-		mongoose-3.8.tgz:mongoose
-DIST_SUBDIR=	${PORTNAME}
-
-MAINTAINER=	mp39590@gmail.com
-COMMENT=	RESTful DICOM server for healthcare and medical research
-
-# GPLv3 license, with the OpenSSL exception.
-LICENSE=	GPLv3
-LICENSE_FILE=	${WRKSRC}/COPYING
-
-BROKEN=		fails to build with boost 1.66, see bug 224177
-BROKEN_powerpc64=	fails to configure: CMake: Looking for C++ include pugixml.hpp - not found
-DEPRECATED=	Broken for more than 3 months
-EXPIRATION_DATE=	2018-06-06
-
-LIB_DEPENDS=	libcurl.so:ftp/curl \
-		libjsoncpp.so:devel/jsoncpp \
-		libuuid.so:misc/e2fsprogs-libuuid \
-		libboost_filesystem.so:devel/boost-libs \
-		libboost_thread.so:devel/boost-libs \
-		libboost_system.so:devel/boost-libs \
-		libboost_date_time.so:devel/boost-libs \
-		libboost_regex.so:devel/boost-libs \
-		libboost_locale.so:devel/boost-libs \
-		libdcmdsig.so:devel/dcmtk \
-		libcharls.so:devel/dcmtk \
-		libdcmjpls.so:devel/dcmtk \
-		libsqlite3.so:databases/sqlite3 \
-		libpng.so:graphics/png \
-		libgtest.so:devel/googletest \
-		libpugixml.so:textproc/pugixml
-
-CMAKE_ARGS=	-DDCMTK_LIBRARIES="dcmdsig;charls;dcmjpls" \
-		-DDCMTK_DIR="${LOCALBASE}" \
-		-DDCMTK_DICTIONARY_DIR="${LOCALBASE}/share/dcmtk" \
-		-DUSE_SYSTEM_MONGOOSE=OFF \
-		-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF
-
-USES=		cmake:outsource dos2unix jpeg lua:51 python:build ssl
-CFLAGS+=	-I${LOCALBASE}/include
-DOS2UNIX_FILES=	CMakeLists.txt
-USE_LDCONFIG=	yes
-USE_RC_SUBR=	orthanc
-WRKSRC=		${WRKDIR}/Orthanc-${PORTVERSION}
-USERS=		orthanc
-GROUPS=		orthanc
-PLIST_SUB+=	PORTVERSION=${PORTVERSION}
-
-# This is mongoose sources, downloaded from Orthanc author homepage.  Orthanc
-# requires mongoose webserver, but after version 3.8, mongoose developers has
-# changed the license from MIT to GPLv2 only. This action made illegal to
-# combine new mongoose versions with GPLv3 only Orthanc.
-# We download sources manually and pass USE_SYSTEM_MONGOOSE=OFF to Orthanc
-# cmake variables to tell that mongoose is not presented on the host OS and
-# should be build together with the software instead.
-# https://www.mail-archive.com/mongoose-users@googlegroups.com/msg00625.html
-post-patch:
-	${MKDIR} ${WRKSRC}/ThirdPartyDownloads
-	${CP} ${DISTDIR}/${DIST_SUBDIR}/mongoose-3.8.tgz ${WRKSRC}/ThirdPartyDownloads
-	# Orthanc hardcodes /usr/local paths for libs and includes.
-	@${REINPLACE_CMD} -e 's|/usr/local|${LOCALBASE}|g' ${WRKSRC}/Resources/CMake/*.cmake
-
-# There is no way to disable building of test units without a patch, on other
-# hand it brings only one build dependency (devel/googletest) and running it was
-# helpful in early bug detection in Debian.
-# Some tests require connections to be made to the outside world, this is
-# definitely unsupported behaviour and therefor those tests are disabled with
-# cmake variable above (-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF).
-#
-# Tests run is temporary disabled: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=215393
-#post-build:
-#	@cd ${BUILD_WRKSRC} && ./UnitTests
-
-post-install:
-	${MKDIR} ${STAGEDIR}/var/db/orthanc/db/db-v5
-	${MKDIR} ${STAGEDIR}${DATADIR}/plugins
-	${MKDIR} ${STAGEDIR}${ETCDIR}
-	${REINPLACE_CMD} -e 's|%%PREFIX%%|${PREFIX}|g' ${WRKSRC}/Resources/Configuration.json
-	${CP} ${WRKSRC}/Resources/Configuration.json ${STAGEDIR}${ETCDIR}/orthanc.json.sample
-	${STRIP_CMD} ${STAGEDIR}${DATADIR}/plugins/libServeFolders.so.${PORTVERSION}
-
-.include <bsd.port.mk>
diff --git a/science/orthanc/distinfo b/science/orthanc/distinfo
deleted file mode 100644
index 14471b8ebf02..000000000000
--- a/science/orthanc/distinfo
+++ /dev/null
@@ -1,5 +0,0 @@
-TIMESTAMP = 1508149082
-SHA256 (orthanc/Orthanc-1.3.0.tar.gz) = a68b3c3fda8ea5cd065d356b314737634d8088d6ab2380c9ccfa433cc8fe61de
-SIZE (orthanc/Orthanc-1.3.0.tar.gz) = 1231636
-SHA256 (orthanc/mongoose-3.8.tgz) = 6afc2c377614a01a24b78560a62d1316b29372afe08eae3715b56c877be71c6e
-SIZE (orthanc/mongoose-3.8.tgz) = 1577314
diff --git a/science/orthanc/files/orthanc.in b/science/orthanc/files/orthanc.in
deleted file mode 100644
index 3dcf4cd38fe0..000000000000
--- a/science/orthanc/files/orthanc.in
+++ /dev/null
@@ -1,40 +0,0 @@
-#!/bin/sh
-
-# $FreeBSD$
-#
-# PROVIDE: orthanc
-# REQUIRE: LOGIN
-# KEYWORD: shutdown
-#
-# Add these lines to /etc/rc.conf.local or /etc/rc.conf
-# to enable this service:
-#
-# orthanc_enable (bool):	Set to NO by default.
-#				Set it to YES to enable Orthanc.
-# orthanc_flags (str):		Set to %%ETCDIR%%/orthanc.json
-#				by default.
-
-. /etc/rc.subr
-
-name=orthanc
-rcvar=orthanc_enable
-desc="RESTful DICOM server for healthcare and medical research"
-
-load_rc_config $name
-
-: ${orthanc_enable:=NO}
-: ${orthanc_flags="%%ETCDIR%%/orthanc.json"}
-
-start_precmd=orthanc_prestart
-pidfile=/var/run/orthanc.pid
-procname=%%PREFIX%%/sbin/Orthanc
-command=/usr/sbin/daemon
-command_args=" -f -p ${pidfile} -u orthanc ${procname} ${orthanc_flags}"
-
-orthanc_prestart()
-{
-	# Have to empty rc_flags so they don't get passed to daemon(8)
-	rc_flags=""
-}
-
-run_rc_command "$1"
diff --git a/science/orthanc/files/patch-Resources_Configuration.json b/science/orthanc/files/patch-Resources_Configuration.json
deleted file mode 100644
index e5db076ecf62..000000000000
--- a/science/orthanc/files/patch-Resources_Configuration.json
+++ /dev/null
@@ -1,25 +0,0 @@
---- Resources/Configuration.json.orig	2017-07-19 11:10:48 UTC
-+++ Resources/Configuration.json
-@@ -10,12 +10,12 @@
-   // Path to the directory that holds the heavyweight files (i.e. the
-   // raw DICOM instances). Backslashes must be either escaped by
-   // doubling them, or replaced by forward slashes "/".
--  "StorageDirectory" : "OrthancStorage",
-+  "StorageDirectory" : "/var/db/orthanc/db-v5",
- 
-   // Path to the directory that holds the SQLite index (if unset, the
-   // value of StorageDirectory is used). This index could be stored on
-   // a RAM-drive or a SSD device for performance reasons.
--  "IndexDirectory" : "OrthancStorage",
-+  "IndexDirectory" : "/var/db/orthanc/db-v5",
- 
-   // Enable the transparent compression of the DICOM instances
-   "StorageCompression" : false,
-@@ -41,6 +41,7 @@
-   // find shared libraries. Backslashes must be either escaped by
-   // doubling them, or replaced by forward slashes "/".
-   "Plugins" : [
-+    "%%PREFIX%%/share/orthanc/plugins/"
-   ],
- 
- 
diff --git a/science/orthanc/pkg-descr b/science/orthanc/pkg-descr
deleted file mode 100644
index 1438133bfceb..000000000000
--- a/science/orthanc/pkg-descr
+++ /dev/null
@@ -1,20 +0,0 @@
-Orthanc aims at providing a simple, yet powerful standalone DICOM
-server. It is designed to improve the DICOM flows in hospitals and to
-support research about the automated analysis of medical images.
-
-Orthanc can turn any computer running Windows, Linux, FreeBSD or OS X
-into a DICOM store (in other words, a mini-PACS system). Its
-architecture is lightweight and standalone, meaning that no complex
-database administration is required, nor the installation of third-party
-dependencies.
-
-What makes Orthanc unique is the fact that it provides a RESTful API.
-Thanks to this major feature, it is possible to drive Orthanc from any
-computer language. The DICOM tags of the stored medical images can be
-downloaded in the JSON file format. Furthermore, standard PNG images can
-be generated on-the-fly from the DICOM instances by Orthanc.
-
-Orthanc lets its users focus on the content of the DICOM files, hiding
-the complexity of the DICOM format and of the DICOM protocol.
-
-WWW: http://www.orthanc-server.com/
diff --git a/science/orthanc/pkg-plist b/science/orthanc/pkg-plist
deleted file mode 100644
index ddcea532f3b0..000000000000
--- a/science/orthanc/pkg-plist
+++ /dev/null
@@ -1,19 +0,0 @@
-@owner orthanc
-@group orthanc
-@mode 700
-@dir %%DATADIR%%/plugins
-@dir /var/db/orthanc/db/db-v5
-@dir /var/db/orthanc/db
-@dir /var/db/orthanc
-@mode 600
-@sample %%ETCDIR%%/orthanc.json.sample
-@mode
-include/orthanc/OrthancCDatabasePlugin.h
-include/orthanc/OrthancCPlugin.h
-include/orthanc/OrthancCppDatabasePlugin.h
-%%DATADIR%%/plugins/libServeFolders.so
-%%DATADIR%%/plugins/libServeFolders.so.%%PORTVERSION%%
-%%DATADIR%%/plugins/libModalityWorklists.so
-%%DATADIR%%/plugins/libModalityWorklists.so.%%PORTVERSION%%
-bin/OrthancRecoverCompressedFile
-sbin/Orthanc