Update math/R to 3.0.1-patched, and adjust dependent ports;

synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota

10 files changed, 10 insertions, 7 deletions

diff --git a/science/R-cran-AMORE/Makefile b/science/R-cran-AMORE/Makefile
index 35d06ac5bffc..10b3a96ff70b 100644
--- a/science/R-cran-AMORE/Makefile
+++ b/science/R-cran-AMORE/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	AMORE
 PORTVERSION=	0.2.12
-PORTREVISION=	10
+PORTREVISION=	11
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
 
diff --git a/science/R-cran-DCluster/Makefile b/science/R-cran-DCluster/Makefile
index 3fd28f506c79..15b9c98d4d73 100644
--- a/science/R-cran-DCluster/Makefile
+++ b/science/R-cran-DCluster/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	DCluster
 DISTVERSION=	0.2-6
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${DISTVERSION}
 
diff --git a/science/R-cran-Epi/Makefile b/science/R-cran-Epi/Makefile
index f8b3c6bb78fc..f5ea6a36a0b1 100644
--- a/science/R-cran-Epi/Makefile
+++ b/science/R-cran-Epi/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	Epi
 PORTVERSION=	1.1.49
+PORTREVISION=	1
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${PORTVERSION}
 
diff --git a/science/R-cran-bayesm/Makefile b/science/R-cran-bayesm/Makefile
index 2dad766a265b..26164cdb0b45 100644
--- a/science/R-cran-bayesm/Makefile
+++ b/science/R-cran-bayesm/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	bayesm
 PORTVERSION=	2.2.4
-PORTREVISION=	10
+PORTREVISION=	11
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
 
diff --git a/science/R-cran-e1071/Makefile b/science/R-cran-e1071/Makefile
index 766a7a8bf2fa..dc7efef819e9 100644
--- a/science/R-cran-e1071/Makefile
+++ b/science/R-cran-e1071/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	e1071
 DISTVERSION=	1.6-1
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${DISTVERSION}
 
diff --git a/science/R-cran-eco/Makefile b/science/R-cran-eco/Makefile
index 4bffa271945f..d974f1f0105e 100644
--- a/science/R-cran-eco/Makefile
+++ b/science/R-cran-eco/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	eco
 PORTVERSION=	3.1.6
+PORTREVISION=	1
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
 
diff --git a/science/R-cran-epicalc/Makefile b/science/R-cran-epicalc/Makefile
index 24fc398a8986..5ef562f5eafe 100644
--- a/science/R-cran-epicalc/Makefile
+++ b/science/R-cran-epicalc/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	epicalc
 PORTVERSION=	2.15.1.0
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${PORTVERSION}
 
diff --git a/science/R-cran-snow/Makefile b/science/R-cran-snow/Makefile
index 876ad86ec6ac..618c0e1d20b8 100644
--- a/science/R-cran-snow/Makefile
+++ b/science/R-cran-snow/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	snow
 DISTVERSION=	0.3-12
+PORTREVISION=	1
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${DISTVERSION}
 
diff --git a/science/R-cran-som/Makefile b/science/R-cran-som/Makefile
index 9d0dbbe298bc..27e69662881b 100644
--- a/science/R-cran-som/Makefile
+++ b/science/R-cran-som/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	som
 DISTVERSION=	0.3-5
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${DISTVERSION}
 
diff --git a/science/afni/Makefile b/science/afni/Makefile
index 1343a5ef859c..e490f4aee4ee 100644
--- a/science/afni/Makefile
+++ b/science/afni/Makefile
@@ -11,7 +11,7 @@
 
 PORTNAME=	afni
 PORTVERSION=	2012.04.17.2129
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	science biology graphics
 MASTER_SITES=	http://personalpages.tds.net/~jwbacon/Ports/distfiles/AFNI/${PORTVERSION}/ \
 		http://www.acadix.biz/Ports/distfiles/AFNI/${PORTVERSION}/