NIfTI-1 is a new Analyze-style data format, proposed by the NIfTI DFWG

as a short-term measure to facilitate inter-operation of functional MRI
data analysis software packages.

WWW:	http://nifti.nimh.nih.gov/

PR:		ports/112183
Submitted by:	Jason W. Bacon

7 files changed, 105 insertions, 0 deletions

diff --git a/science/Makefile b/science/Makefile
index 3b9c04e9768f..6f698f843b9b 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -73,6 +73,7 @@
     SUBDIR += mpqc
     SUBDIR += mpqc-mpich
     SUBDIR += netcdf
+    SUBDIR += nifticlib
     SUBDIR += oases
     SUBDIR += omnetpp
     SUBDIR += oof
diff --git a/science/nifticlib/Makefile b/science/nifticlib/Makefile
new file mode 100644
index 000000000000..10b7b8610d19
--- /dev/null
+++ b/science/nifticlib/Makefile
@@ -0,0 +1,27 @@
+# New ports collection makefile for:	nifticlib
+# Date created:		2007-04-27
+# Whom:			Jason W. Bacon
+#
+# $FreeBSD$
+#
+
+PORTNAME=	nifticlib
+PORTVERSION=	0.4
+CATEGORIES=	science graphics
+MASTER_SITES=	${MASTER_SITE_SOURCEFORGE}
+MASTER_SITE_SUBDIR=	niftilib
+
+MAINTAINER=	bacon@smithers.neuro.mcw.edu
+COMMENT=	Neuroimaging Infoirmatics Technology Initiative data format
+
+USE_GMAKE=	yes
+
+MAN1=		nifticlib.1
+
+do-install:
+	${INSTALL_PROGRAM} ${WRKSRC}/bin/* ${PREFIX}/bin
+	${INSTALL_DATA} ${WRKSRC}/lib/* ${PREFIX}/lib
+	${INSTALL_DATA} ${WRKSRC}/include/* ${PREFIX}/include
+	${INSTALL_MAN} ${FILESDIR}/nifticlib.1 ${PREFIX}/man/man1
+
+.include <bsd.port.mk>
diff --git a/science/nifticlib/distinfo b/science/nifticlib/distinfo
new file mode 100644
index 000000000000..6dfa953b7275
--- /dev/null
+++ b/science/nifticlib/distinfo
@@ -0,0 +1,3 @@
+MD5 (nifticlib-0.4.tar.gz) = d343dd156dcadab07181427d8b6a4eff
+SHA256 (nifticlib-0.4.tar.gz) = 0dbab306fa3b07621f54938bd5f32b80a4a9ea2e665e753adc223ba6c3340ed2
+SIZE (nifticlib-0.4.tar.gz) = 223814
diff --git a/science/nifticlib/files/nifticlib.1 b/science/nifticlib/files/nifticlib.1
new file mode 100644
index 000000000000..f116c758bfd4
--- /dev/null
+++ b/science/nifticlib/files/nifticlib.1
@@ -0,0 +1,21 @@
+.TH NIFTICLIB 1
+.SH NAME    \" Section header
+.PP
+ 
+NIFTICLIB - Neuroimaging Informatics Technology Initiative data format
+
+.SH "DESCRIPTION"
+
+.B Nifticlib
+is a set of tools and libraries for maintaining a common data format
+among neuroimaging applications.  For documentation, please visit
+http://nifti.nimh.nih.gov/
+
+.SH "SEE ALSO"
+afni(1), fsl(1), caret(1)
+
+.SH AUTHOR
+.nf
+.na
+Robert Cox, PhD, et. al.
+
diff --git a/science/nifticlib/files/patch-Makefile b/science/nifticlib/files/patch-Makefile
new file mode 100644
index 000000000000..ade6b81051bb
--- /dev/null
+++ b/science/nifticlib/files/patch-Makefile
@@ -0,0 +1,36 @@
+--- Makefile.orig	Wed Sep  6 13:12:43 2006
++++ Makefile	Fri Apr 27 09:04:12 2007
+@@ -15,21 +15,21 @@
+ 
+ 
+ ## Compiler  defines
+-cc		=	gcc
+-CC		=	gcc
+-AR		=	ar
+-RANLIB  = ranlib
+-DEPENDFLAGS	=	-MM
+-GNU_ANSI_FLAGS	= 	-Wall -ansi -pedantic
+-ANSI_FLAGS	= 	${GNU_ANSI_FLAGS}
+-CFLAGS		=	$(ANSI_FLAGS)
++cc		?=	gcc
++CC		?=	gcc
++AR		?=	ar
++RANLIB  	?=	ranlib
++DEPENDFLAGS	?=	-MM
++GNU_ANSI_FLAGS	?= 	-Wall -ansi -pedantic
++ANSI_FLAGS	?= 	${GNU_ANSI_FLAGS}
++CFLAGS		?=	$(ANSI_FLAGS)
+ 
+ ## Command defines
+ ## gmake does not work on MacOSX or some versions of linux MAKE  = gmake 
+-RM		=	rm
+-MV		=	mv
+-CP		=	cp
+-TAR		=	/opt/csw/bin/gtar ##/usr/freeware/bin/tar
++RM		?=	rm
++MV		?=	mv
++CP		?=	cp
++TAR		?=	/opt/csw/bin/gtar ##/usr/freeware/bin/tar
+ 
+ 
+ ## Installation
diff --git a/science/nifticlib/pkg-descr b/science/nifticlib/pkg-descr
new file mode 100644
index 000000000000..d44ba5697d98
--- /dev/null
+++ b/science/nifticlib/pkg-descr
@@ -0,0 +1,5 @@
+NIfTI-1 is a new Analyze-style data format, proposed by the NIfTI DFWG
+as a short-term measure to facilitate inter-operation of functional MRI
+data analysis software packages.
+
+WWW:	http://nifti.nimh.nih.gov/
diff --git a/science/nifticlib/pkg-plist b/science/nifticlib/pkg-plist
new file mode 100644
index 000000000000..7eab9e4b445d
--- /dev/null
+++ b/science/nifticlib/pkg-plist
@@ -0,0 +1,12 @@
+bin/nifti1_test
+bin/nifti_stats
+bin/nifti_tool
+include/config.h
+include/dbh.h
+include/fslio.h
+include/nifti1.h
+include/nifti1_io.h
+include/znzlib.h
+lib/libfslio.a
+lib/libniftiio.a
+lib/libznz.a