add bblimage 0.66

A set of software tools for medical image processing

11 files changed, 135 insertions, 0 deletions

diff --git a/science/Makefile b/science/Makefile
index 3d8849b72cd4..8f89b642b6b6 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -1,6 +1,7 @@
 # $FreeBSD$
 #
 
+    SUBDIR += bblimage
     SUBDIR += chemtool
     SUBDIR += clhep
     SUBDIR += euler
diff --git a/science/bblimage/Makefile b/science/bblimage/Makefile
new file mode 100644
index 000000000000..6271392638fd
--- /dev/null
+++ b/science/bblimage/Makefile
@@ -0,0 +1,31 @@
+# ex:ts=8
+# Ports collection Makefile for:	bblimage
+# Date created:			Jul 22, 2002
+# Whom:				ijliao
+#
+# $FreeBSD$
+#
+
+PORTNAME=	bblimage
+PORTVERSION=	0.66
+CATEGORIES=	science
+MASTER_SITES=	http://www.uphs.upenn.edu/bbl/software/files/
+EXTRACT_SUFX=	.src.tgz
+
+MAINTAINER=	ports@FreeBSD.org
+
+USE_PYTHON=	yes
+USE_REINPLACE=	yes
+GNU_CONFIGURE=	yes
+CONFIGURE_ARGS=	--with-lapack --with-python
+USE_GMAKE=	yes
+
+MAN1=	anonbblanz.1 bblimage.1 binnseg.1 conseg.1 decomment.1 dumpbblanz.1 \
+	imstack.1 inleav2.1 lovar.1 qdv.1 rpsamp.1 skmiv.1 swab.1 usb2uc.1 \
+	vibihist.1 vihist.1
+MAN5=	cdata.5 mri_data.5 param.5
+
+post-patch:
+	@${REINPLACE_CMD} -e "s|1\.5|2.2|g" ${WRKSRC}/configure ${WRKSRC}/Makefile.in
+
+.include <bsd.port.mk>
diff --git a/science/bblimage/distinfo b/science/bblimage/distinfo
new file mode 100644
index 000000000000..f68a65f27535
--- /dev/null
+++ b/science/bblimage/distinfo
@@ -0,0 +1 @@
+MD5 (bblimage-0.66.src.tgz) = 9b01e8128c4009984300453ee00d601c
diff --git a/science/bblimage/pkg-comment b/science/bblimage/pkg-comment
new file mode 100644
index 000000000000..0c0dfba72789
--- /dev/null
+++ b/science/bblimage/pkg-comment
@@ -0,0 +1 @@
+A set of software tools for medical image processing
diff --git a/science/bblimage/pkg-descr b/science/bblimage/pkg-descr
new file mode 100644
index 000000000000..9753cc4f0d55
--- /dev/null
+++ b/science/bblimage/pkg-descr
@@ -0,0 +1,10 @@
+BBLimage is a set of software tools for medical image processing, particularly
+skull stripping and segmentation of MR brain images; tools to support other
+applications may be added later. These tools are intended to support
+researchers who need to prototype new image analysis algorithms or to develop
+automated image analysis tools for specific image analysis applications. The
+sequence of processing operations is specified through a scripting language
+which can be used interactively or in command files; the language used is an
+extension of Python.
+
+WWW: http://www.uphs.upenn.edu/bbl/software/bblimage/
diff --git a/science/bblimage/pkg-plist b/science/bblimage/pkg-plist
new file mode 100644
index 000000000000..2d43acd1cffe
--- /dev/null
+++ b/science/bblimage/pkg-plist
@@ -0,0 +1,24 @@
+bin/anonbblanz
+bin/binnseg
+bin/conseg
+bin/decomment
+bin/dumpbblanz
+bin/imstack
+bin/inleav2
+bin/lovar
+bin/rowcol
+bin/rpsamp
+bin/skmiv
+bin/swab
+bin/usb2uc
+bin/vibihist
+bin/vihist
+lib/libbbli.so
+lib/python2.2/site-packages/exim.so
+lib/python2.2/site-packages/optim.py
+lib/python2.2/site-packages/optim.pyc
+lib/python2.2/site-packages/pyvox.py
+lib/python2.2/site-packages/pyvox.pyc
+lib/python2.2/site-packages/pyvoxC.so
+lib/python2.2/site-packages/regis.py
+lib/python2.2/site-packages/regis.pyc
diff --git a/science/pyvox/Makefile b/science/pyvox/Makefile
new file mode 100644
index 000000000000..6271392638fd
--- /dev/null
+++ b/science/pyvox/Makefile
@@ -0,0 +1,31 @@
+# ex:ts=8
+# Ports collection Makefile for:	bblimage
+# Date created:			Jul 22, 2002
+# Whom:				ijliao
+#
+# $FreeBSD$
+#
+
+PORTNAME=	bblimage
+PORTVERSION=	0.66
+CATEGORIES=	science
+MASTER_SITES=	http://www.uphs.upenn.edu/bbl/software/files/
+EXTRACT_SUFX=	.src.tgz
+
+MAINTAINER=	ports@FreeBSD.org
+
+USE_PYTHON=	yes
+USE_REINPLACE=	yes
+GNU_CONFIGURE=	yes
+CONFIGURE_ARGS=	--with-lapack --with-python
+USE_GMAKE=	yes
+
+MAN1=	anonbblanz.1 bblimage.1 binnseg.1 conseg.1 decomment.1 dumpbblanz.1 \
+	imstack.1 inleav2.1 lovar.1 qdv.1 rpsamp.1 skmiv.1 swab.1 usb2uc.1 \
+	vibihist.1 vihist.1
+MAN5=	cdata.5 mri_data.5 param.5
+
+post-patch:
+	@${REINPLACE_CMD} -e "s|1\.5|2.2|g" ${WRKSRC}/configure ${WRKSRC}/Makefile.in
+
+.include <bsd.port.mk>
diff --git a/science/pyvox/distinfo b/science/pyvox/distinfo
new file mode 100644
index 000000000000..f68a65f27535
--- /dev/null
+++ b/science/pyvox/distinfo
@@ -0,0 +1 @@
+MD5 (bblimage-0.66.src.tgz) = 9b01e8128c4009984300453ee00d601c
diff --git a/science/pyvox/pkg-comment b/science/pyvox/pkg-comment
new file mode 100644
index 000000000000..0c0dfba72789
--- /dev/null
+++ b/science/pyvox/pkg-comment
@@ -0,0 +1 @@
+A set of software tools for medical image processing
diff --git a/science/pyvox/pkg-descr b/science/pyvox/pkg-descr
new file mode 100644
index 000000000000..9753cc4f0d55
--- /dev/null
+++ b/science/pyvox/pkg-descr
@@ -0,0 +1,10 @@
+BBLimage is a set of software tools for medical image processing, particularly
+skull stripping and segmentation of MR brain images; tools to support other
+applications may be added later. These tools are intended to support
+researchers who need to prototype new image analysis algorithms or to develop
+automated image analysis tools for specific image analysis applications. The
+sequence of processing operations is specified through a scripting language
+which can be used interactively or in command files; the language used is an
+extension of Python.
+
+WWW: http://www.uphs.upenn.edu/bbl/software/bblimage/
diff --git a/science/pyvox/pkg-plist b/science/pyvox/pkg-plist
new file mode 100644
index 000000000000..2d43acd1cffe
--- /dev/null
+++ b/science/pyvox/pkg-plist
@@ -0,0 +1,24 @@
+bin/anonbblanz
+bin/binnseg
+bin/conseg
+bin/decomment
+bin/dumpbblanz
+bin/imstack
+bin/inleav2
+bin/lovar
+bin/rowcol
+bin/rpsamp
+bin/skmiv
+bin/swab
+bin/usb2uc
+bin/vibihist
+bin/vihist
+lib/libbbli.so
+lib/python2.2/site-packages/exim.so
+lib/python2.2/site-packages/optim.py
+lib/python2.2/site-packages/optim.pyc
+lib/python2.2/site-packages/pyvox.py
+lib/python2.2/site-packages/pyvox.pyc
+lib/python2.2/site-packages/pyvoxC.so
+lib/python2.2/site-packages/regis.py
+lib/python2.2/site-packages/regis.pyc