qa: add check for NO_ARCH

If NO_ARCH is set then check that no FreeBSD elf(5) files are in $STAGEDIR.
If an elf(5) file is bundles as part of the package, but is not meant to be
run directly (i.e. the elf(5) file is a payload, and not compiled) then
those files can be added to NO_ARCH_IGNORE to avoid the check from failing,

Changes to ports:
 - Ports that have NO_ARCH set, but actually compile files have had NO_ARCH
   removed.
 - Ports that have elf(5) payloads have had those files added to
   NO_ARCH_IGNORE.
 - R-cran ports that do not set USES=cran:compiles have NO_ARCH set,

PR:		218976
Reviewed by:	antoine, mat
Approved by:	portmgr

6 files changed, 12 insertions, 8 deletions

diff --git a/science/R-cran-AMORE/Makefile b/science/R-cran-AMORE/Makefile
index f188dfae9447..f26189bf3a7a 100644
--- a/science/R-cran-AMORE/Makefile
+++ b/science/R-cran-AMORE/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	AMORE
 PORTVERSION=	0.2.14
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}
 
@@ -13,6 +13,6 @@ COMMENT=	MORE flexible neural network package
 LICENSE=	GPLv2 GPLv3
 LICENSE_COMB=	dual
 
-USES=		cran:auto-plist
+USES=		cran:auto-plist,compiles
 
 .include <bsd.port.mk>
diff --git a/science/R-cran-DCluster/Makefile b/science/R-cran-DCluster/Makefile
index 1c72d7700061..beb50e609d86 100644
--- a/science/R-cran-DCluster/Makefile
+++ b/science/R-cran-DCluster/Makefile
@@ -2,6 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	DCluster
+PORTREVISION=	1
 DISTVERSION=	0.2-7
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${DISTVERSION}
@@ -14,6 +15,6 @@ LICENSE_COMB=	dual
 
 RUN_DEPENDS=	R-cran-spdep>0:math/R-cran-spdep
 
-USES=	cran:auto-plist
+USES=		cran:auto-plist,compiles
 
 .include <bsd.port.mk>
diff --git a/science/R-cran-bayesm/Makefile b/science/R-cran-bayesm/Makefile
index fd504b5aeff2..6400e7a2ab5e 100644
--- a/science/R-cran-bayesm/Makefile
+++ b/science/R-cran-bayesm/Makefile
@@ -2,6 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	bayesm
+PORTREVISION=	1
 DISTVERSION=	3.0-2
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${DISTVERSION}
@@ -14,6 +15,6 @@ LICENSE_COMB=	dual
 
 RUN_DEPENDS=	R-cran-RcppArmadillo>=0:math/R-cran-RcppArmadillo
 
-USES=		cran:auto-plist
+USES=		cran:auto-plist,compiles
 
 .include <bsd.port.mk>
diff --git a/science/R-cran-cmprsk/Makefile b/science/R-cran-cmprsk/Makefile
index 904e8dfd3c51..75fee70af9c8 100644
--- a/science/R-cran-cmprsk/Makefile
+++ b/science/R-cran-cmprsk/Makefile
@@ -2,6 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	cmprsk
+PORTREVISION=	1
 DISTVERSION=	2.2-7
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${DISTVERSION}
@@ -12,6 +13,6 @@ COMMENT=	Subdistribution Analysis of Competing Risks
 LICENSE=	GPLv2 GPLv3
 LICENSE_COMB=	dual
 
-USES=	cran:auto-plist
+USES=		cran:auto-plist,compiles
 
 .include <bsd.port.mk>
diff --git a/science/R-cran-eco/Makefile b/science/R-cran-eco/Makefile
index c13b3f6c1eda..f49d51050587 100644
--- a/science/R-cran-eco/Makefile
+++ b/science/R-cran-eco/Makefile
@@ -3,13 +3,13 @@
 
 PORTNAME=	eco
 PORTVERSION=	3.1.6
-PORTREVISION=	5
+PORTREVISION=	6
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}
 
 MAINTAINER=	wen@FreeBSD.org
 COMMENT=	R Package for Ecological Inference in 2x2 Tables
 
-USES=	cran:auto-plist
+USES=		cran:auto-plist,compiles
 
 .include <bsd.port.mk>
diff --git a/science/R-cran-etm/Makefile b/science/R-cran-etm/Makefile
index a3fb154a0fe7..8586dcc7a5be 100644
--- a/science/R-cran-etm/Makefile
+++ b/science/R-cran-etm/Makefile
@@ -2,6 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	etm
+PORTREVISION=	1
 DISTVERSION=	0.6-2
 CATEGORIES=	science
 DISTNAME=	${PORTNAME}_${DISTVERSION}
@@ -12,6 +13,6 @@ COMMENT=	Empirical Transition Matrix
 LICENSE=	GPLv2 GPLv3
 LICENSE_COMB=	dual
 
-USES=	cran:auto-plist
+USES=		cran:auto-plist,compiles
 
 .include <bsd.port.mk>