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authorgerald <gerald@FreeBSD.org>2013-10-26 08:52:33 +0800
committergerald <gerald@FreeBSD.org>2013-10-26 08:52:33 +0800
commit59207d74c514f603766aee8c408fb3141a60dbe5 (patch)
treeb8b96118ea47b0d759741f6837c7c0e3268cf8b1 /science
parent027239e19a44ee9ad3bbb081af344ea9813f9994 (diff)
downloadfreebsd-ports-gnome-59207d74c514f603766aee8c408fb3141a60dbe5.tar.gz
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Update to libmpc version 1.0.1 which brings the following fixes:
- Switched to automake 1.11.6, see CVE-2012-3386. - #14669: Fixed extraction of CC from gmp.h. - Fixed case of intermediate zero real or imaginary part in mpc_fma, found by hydra with GMP_CHECK_RANDOMIZE=1346362345. This is on top of the following changes from version 1.0 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no invariant sections) for the documentation. - 100% of all lines are covered by tests - Renamed functions . mpc_mul_2exp to mpc_mul_2ui . mpc_div_2exp to mpc_div_2ui - 0^0, which returned (NaN,NaN) previously, now returns (1,+0). - Removed compatibility with K&R compilers, which was untestable due to lack of such compilers. - New functions . mpc_log10 . mpc_mul_2si, mpc_div_2si - Speed-ups . mpc_fma - Bug fixes . mpc_div and mpc_norm now return a value indicating the effective rounding direction, as the other functions. . mpc_mul, mpc_sqr and mpc_norm now return correct results even if there are over- or underflows during the computation. . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has infinite part and equals output variable is corrected. . mpc_fr_sub: Wrong return value for imaginary part is corrected. Convert to the new LIB_DEPENDS standard and remove hard-coded .so versions from a couple of dependent ports. Bump PORTREVISIONS of all dependent ports. PR: 183141 Approved by: portmgr (bdrewery)
Diffstat (limited to 'science')
-rw-r--r--science/2dhf/Makefile2
-rw-r--r--science/R-cran-AMORE/Makefile2
-rw-r--r--science/R-cran-DCluster/Makefile2
-rw-r--r--science/R-cran-Epi/Makefile2
-rw-r--r--science/R-cran-bayesm/Makefile2
-rw-r--r--science/R-cran-e1071/Makefile2
-rw-r--r--science/R-cran-eco/Makefile2
-rw-r--r--science/R-cran-epicalc/Makefile2
-rw-r--r--science/R-cran-snow/Makefile1
-rw-r--r--science/R-cran-som/Makefile2
-rw-r--r--science/abinit/Makefile2
-rw-r--r--science/afni/Makefile2
-rw-r--r--science/avogadro/Makefile1
-rw-r--r--science/brian/Makefile1
-rw-r--r--science/cdf/Makefile1
-rw-r--r--science/cgnslib/Makefile1
-rw-r--r--science/dcl/Makefile1
-rw-r--r--science/dlpoly-classic/Makefile1
-rw-r--r--science/ecs/Makefile2
-rw-r--r--science/elmer-eio/Makefile2
-rw-r--r--science/elmer-hutiter/Makefile2
-rw-r--r--science/flounder/Makefile2
-rw-r--r--science/fvcom/Makefile1
-rw-r--r--science/fvm/Makefile2
-rw-r--r--science/gamess/Makefile1
-rw-r--r--science/getdp/Makefile2
-rw-r--r--science/ghemical/Makefile1
-rw-r--r--science/gnudatalanguage/Makefile1
-rw-r--r--science/gromacs/Makefile2
-rw-r--r--science/harminv/Makefile2
-rw-r--r--science/hdf/Makefile1
-rw-r--r--science/hs-bio/Makefile2
-rw-r--r--science/isaac-cfd/Makefile2
-rw-r--r--science/kalzium/Makefile1
-rw-r--r--science/libctl/Makefile1
-rw-r--r--science/libghemical/Makefile1
-rw-r--r--science/mbdyn/Makefile1
-rw-r--r--science/mcstas/Makefile2
-rw-r--r--science/meep/Makefile1
-rw-r--r--science/mpb/Makefile2
-rw-r--r--science/mpqc/Makefile2
-rw-r--r--science/ncs/Makefile2
-rw-r--r--science/peekabot/Makefile2
-rw-r--r--science/pnetcdf/Makefile1
-rw-r--r--science/psi3/Makefile2
-rw-r--r--science/psychopy/Makefile1
-rw-r--r--science/py-h5py/Makefile2
-rw-r--r--science/py-hcluster/Makefile2
-rw-r--r--science/py-mdp/Makefile1
-rw-r--r--science/py-mlpy/Makefile2
-rw-r--r--science/py-netCDF4/Makefile1
-rw-r--r--science/py-obspy/Makefile2
-rw-r--r--science/py-pupynere/Makefile1
-rw-r--r--science/py-scikit-learn/Makefile1
-rw-r--r--science/py-scimath/Makefile1
-rw-r--r--science/py-scipy/Makefile1
-rw-r--r--science/pybrain/Makefile1
-rw-r--r--science/pycdf/Makefile1
-rw-r--r--science/pynn/Makefile1
-rw-r--r--science/pyteomics/Makefile1
-rw-r--r--science/ruby-dcl/Makefile1
-rw-r--r--science/ruby-gphys/Makefile1
-rw-r--r--science/ruby-netcdf/Makefile1
-rw-r--r--science/v_sim/Makefile2
-rw-r--r--science/veusz/Makefile1
65 files changed, 65 insertions, 32 deletions
diff --git a/science/2dhf/Makefile b/science/2dhf/Makefile
index f792060966c0..c576446368ea 100644
--- a/science/2dhf/Makefile
+++ b/science/2dhf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= 2dhf
PORTVERSION= 2005.05
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
MASTER_SITES= http://www.fizyka.umk.pl/~jkob/2dhf/
DISTNAME= ${PORTNAME}-05.05
diff --git a/science/R-cran-AMORE/Makefile b/science/R-cran-AMORE/Makefile
index 4e37e7fd5e00..1188b32bc6fd 100644
--- a/science/R-cran-AMORE/Makefile
+++ b/science/R-cran-AMORE/Makefile
@@ -3,7 +3,7 @@
PORTNAME= AMORE
PORTVERSION= 0.2.12
-PORTREVISION= 11
+PORTREVISION= 12
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/science/R-cran-DCluster/Makefile b/science/R-cran-DCluster/Makefile
index 22bf9e48df57..4f40444f9f19 100644
--- a/science/R-cran-DCluster/Makefile
+++ b/science/R-cran-DCluster/Makefile
@@ -3,7 +3,7 @@
PORTNAME= DCluster
DISTVERSION= 0.2-6
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/R-cran-Epi/Makefile b/science/R-cran-Epi/Makefile
index 1bd942853523..245186c8daae 100644
--- a/science/R-cran-Epi/Makefile
+++ b/science/R-cran-Epi/Makefile
@@ -3,7 +3,7 @@
PORTNAME= Epi
PORTVERSION= 1.1.49
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/science/R-cran-bayesm/Makefile b/science/R-cran-bayesm/Makefile
index d713e75c99af..2794bd66ed54 100644
--- a/science/R-cran-bayesm/Makefile
+++ b/science/R-cran-bayesm/Makefile
@@ -3,7 +3,7 @@
PORTNAME= bayesm
PORTVERSION= 2.2.4
-PORTREVISION= 11
+PORTREVISION= 12
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/science/R-cran-e1071/Makefile b/science/R-cran-e1071/Makefile
index bcbb809b2a9f..f541beb2105b 100644
--- a/science/R-cran-e1071/Makefile
+++ b/science/R-cran-e1071/Makefile
@@ -3,7 +3,7 @@
PORTNAME= e1071
DISTVERSION= 1.6-1
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/R-cran-eco/Makefile b/science/R-cran-eco/Makefile
index 9abbff41ffb8..186d65561fc6 100644
--- a/science/R-cran-eco/Makefile
+++ b/science/R-cran-eco/Makefile
@@ -3,7 +3,7 @@
PORTNAME= eco
PORTVERSION= 3.1.6
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/science/R-cran-epicalc/Makefile b/science/R-cran-epicalc/Makefile
index e459975c34f5..473fdf4e3cf7 100644
--- a/science/R-cran-epicalc/Makefile
+++ b/science/R-cran-epicalc/Makefile
@@ -3,7 +3,7 @@
PORTNAME= epicalc
PORTVERSION= 2.15.1.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/science/R-cran-snow/Makefile b/science/R-cran-snow/Makefile
index 948cba106f49..f968bb574688 100644
--- a/science/R-cran-snow/Makefile
+++ b/science/R-cran-snow/Makefile
@@ -3,6 +3,7 @@
PORTNAME= snow
DISTVERSION= 0.3-13
+PORTREVISION= 1
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/R-cran-som/Makefile b/science/R-cran-som/Makefile
index 21eaa0edcc62..e289afe948cc 100644
--- a/science/R-cran-som/Makefile
+++ b/science/R-cran-som/Makefile
@@ -3,7 +3,7 @@
PORTNAME= som
DISTVERSION= 0.3-5
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/abinit/Makefile b/science/abinit/Makefile
index 7164eaddde71..2564985177dc 100644
--- a/science/abinit/Makefile
+++ b/science/abinit/Makefile
@@ -3,7 +3,7 @@
PORTNAME= abinit
PORTVERSION= 5.7.3
-PORTREVISION= 11
+PORTREVISION= 12
CATEGORIES= science
MASTER_SITES= ftp://ftp.abinit.org/pub/abinitio/ABINIT_v${PORTVERSION}/
diff --git a/science/afni/Makefile b/science/afni/Makefile
index 62ab2a1c1585..916cce6445a5 100644
--- a/science/afni/Makefile
+++ b/science/afni/Makefile
@@ -11,7 +11,7 @@
PORTNAME= afni
PORTVERSION= 2012.04.17.2129
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science biology graphics
MASTER_SITES= http://personalpages.tds.net/~jwbacon/Ports/distfiles/AFNI/${PORTVERSION}/ \
http://www.acadix.biz/Ports/distfiles/AFNI/${PORTVERSION}/
diff --git a/science/avogadro/Makefile b/science/avogadro/Makefile
index f59a1455da0f..25a034313c5a 100644
--- a/science/avogadro/Makefile
+++ b/science/avogadro/Makefile
@@ -3,6 +3,7 @@
PORTNAME= avogadro
PORTVERSION= 1.1.0
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= SF
diff --git a/science/brian/Makefile b/science/brian/Makefile
index 63246b2fde8a..43b19aafbcf4 100644
--- a/science/brian/Makefile
+++ b/science/brian/Makefile
@@ -3,6 +3,7 @@
PORTNAME= brian
PORTVERSION= 1.4.1
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= CHEESESHOP \
SF/${PORTNAME}/Brian/${PORTVERSION}
diff --git a/science/cdf/Makefile b/science/cdf/Makefile
index 3846cddb4a8c..c8484e5db370 100644
--- a/science/cdf/Makefile
+++ b/science/cdf/Makefile
@@ -3,6 +3,7 @@
PORTNAME= cdf3
PORTVERSION= 3.3.0
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= ${MASTER_SITE_LOCAL} \
ftp://cdaweb.gsfc.nasa.gov/pub/cdf/dist/cdf${VER}/unix/
diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile
index 9c6535bd294e..c45928ef945e 100644
--- a/science/cgnslib/Makefile
+++ b/science/cgnslib/Makefile
@@ -3,6 +3,7 @@
PORTNAME= cgnslib
DISTVERSION= 3.1.4
+PORTREVISION= 1
PORTEPOCH= 1
CATEGORIES= science
MASTER_SITES= SF/cgns/${PORTNAME}_${PORTVERSION:R}/
diff --git a/science/dcl/Makefile b/science/dcl/Makefile
index 514128204b30..3c78a28aadbc 100644
--- a/science/dcl/Makefile
+++ b/science/dcl/Makefile
@@ -3,6 +3,7 @@
PORTNAME= dcl
PORTVERSION= 5.4.7
+PORTREVISION= 1
CATEGORIES= science graphics
MASTER_SITES= http://www.gfd-dennou.org/library/dcl/ \
http://dennou-h.gfd-dennou.org/library/dcl/ \
diff --git a/science/dlpoly-classic/Makefile b/science/dlpoly-classic/Makefile
index c82ff61ca745..60398be62f14 100644
--- a/science/dlpoly-classic/Makefile
+++ b/science/dlpoly-classic/Makefile
@@ -3,6 +3,7 @@
PORTNAME= dlpoly
PORTVERSION= 1.8
+PORTREVISION= 1
CATEGORIES= science java
MASTER_SITES= http://ccpforge.cse.rl.ac.uk/gf/download/frsrelease/238/2028/
PKGNAMESUFFIX= classic
diff --git a/science/ecs/Makefile b/science/ecs/Makefile
index 47b3540e2f60..5db747f50961 100644
--- a/science/ecs/Makefile
+++ b/science/ecs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ecs
PORTVERSION= 2.0.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/
DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g}
diff --git a/science/elmer-eio/Makefile b/science/elmer-eio/Makefile
index dea16e200003..4be37df852d0 100644
--- a/science/elmer-eio/Makefile
+++ b/science/elmer-eio/Makefile
@@ -3,7 +3,7 @@
PORTNAME= eio
PORTVERSION= 5.4.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
MASTER_SITES= http://garr.dl.sourceforge.net/sourceforge/elmerfem/
PKGNAMEPREFIX= elmer-
diff --git a/science/elmer-hutiter/Makefile b/science/elmer-hutiter/Makefile
index 6ca989013e06..98caf36ea5f1 100644
--- a/science/elmer-hutiter/Makefile
+++ b/science/elmer-hutiter/Makefile
@@ -3,7 +3,7 @@
PORTNAME= hutiter
PORTVERSION= 5.4.0
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
MASTER_SITES= http://www.nic.funet.fi/index/files/index/elmer/src/old/ \
http://www.bezopasnik.org/unix/ports/distfiles/
diff --git a/science/flounder/Makefile b/science/flounder/Makefile
index 63c389cf7d52..5e4924e3f42e 100644
--- a/science/flounder/Makefile
+++ b/science/flounder/Makefile
@@ -3,7 +3,7 @@
PORTNAME= flounder
PORTVERSION= 0.40
-PORTREVISION= 15
+PORTREVISION= 16
CATEGORIES= science
MASTER_SITES= http://www.enel.ucalgary.ca/People/vigmond/flounder/
EXTRACT_SUFX= .tgz
diff --git a/science/fvcom/Makefile b/science/fvcom/Makefile
index a716f9c1f74f..ddfb60ec7e58 100644
--- a/science/fvcom/Makefile
+++ b/science/fvcom/Makefile
@@ -3,6 +3,7 @@
PORTNAME= fvcom
PORTVERSION= 2.7.1
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= http://fvcom.smast.umassd.edu/FVCOM/index.html/
DISTNAME= sourcecode1
diff --git a/science/fvm/Makefile b/science/fvm/Makefile
index df5ada9784f6..efc2c478d36b 100644
--- a/science/fvm/Makefile
+++ b/science/fvm/Makefile
@@ -3,7 +3,7 @@
PORTNAME= fvm
PORTVERSION= 0.15.3
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science parallel
MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/
DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g}
diff --git a/science/gamess/Makefile b/science/gamess/Makefile
index 569ed3bee2d5..08a3dab45110 100644
--- a/science/gamess/Makefile
+++ b/science/gamess/Makefile
@@ -3,6 +3,7 @@
PORTNAME= gamess
PORTVERSION= ${SNAPDATE}
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= #http://www.msg.ameslab.gov/GAMESS/License_Agreement.html
DISTNAME= gamess-current
diff --git a/science/getdp/Makefile b/science/getdp/Makefile
index 1beef2387ac9..589f9ab02418 100644
--- a/science/getdp/Makefile
+++ b/science/getdp/Makefile
@@ -3,7 +3,7 @@
PORTNAME= getdp
PORTVERSION= 2.2.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://www.geuz.org/getdp/src/
DISTNAME= ${PORTNAME}-${PORTVERSION}-source
diff --git a/science/ghemical/Makefile b/science/ghemical/Makefile
index 98c6ca1826d5..8cc075034b05 100644
--- a/science/ghemical/Makefile
+++ b/science/ghemical/Makefile
@@ -3,6 +3,7 @@
PORTNAME= ghemical
PORTVERSION= 3.0.0
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= http://bioinformatics.org/ghemical/download/release20111012/ \
http://bioinformatics.org/ghemical/download/current
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index 154dfc9d4478..2b6627f1edf2 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -3,6 +3,7 @@
PORTNAME= gnudatalanguage
DISTVERSION= 0.9.4
+PORTREVISION= 1
CATEGORIES= science lang
MASTER_SITES= SF/${PORTNAME}/gdl/${DISTVERSION}
.if defined(BUILD_PYTHON_MODULE)
diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile
index aca7807cc295..9d4001cd1cc2 100644
--- a/science/gromacs/Makefile
+++ b/science/gromacs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gromacs
PORTVERSION= 4.6.3
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/
diff --git a/science/harminv/Makefile b/science/harminv/Makefile
index 3026f7f0abef..5dba0ecfc8a6 100644
--- a/science/harminv/Makefile
+++ b/science/harminv/Makefile
@@ -3,7 +3,7 @@
PORTNAME= harminv
PORTVERSION= 1.3.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/harminv/
diff --git a/science/hdf/Makefile b/science/hdf/Makefile
index eafacd0e3188..6b6c7225085c 100644
--- a/science/hdf/Makefile
+++ b/science/hdf/Makefile
@@ -3,6 +3,7 @@
PORTNAME= hdf
DISTVERSION= 4.2.8
+PORTREVISION= 1
PORTEPOCH= 1
CATEGORIES= science archivers graphics
MASTER_SITES= http://www.hdfgroup.org/ftp/HDF/releases/%SUBDIR%/
diff --git a/science/hs-bio/Makefile b/science/hs-bio/Makefile
index d43cfb764ec3..6b51504b69d1 100644
--- a/science/hs-bio/Makefile
+++ b/science/hs-bio/Makefile
@@ -3,7 +3,7 @@
PORTNAME= bio
PORTVERSION= 0.5.2
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science haskell
MAINTAINER= haskell@FreeBSD.org
diff --git a/science/isaac-cfd/Makefile b/science/isaac-cfd/Makefile
index 5debbb72ce33..37e4eccc5724 100644
--- a/science/isaac-cfd/Makefile
+++ b/science/isaac-cfd/Makefile
@@ -3,7 +3,7 @@
PORTNAME= isaac
PORTVERSION= 4.2
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science
MASTER_SITES= SF/${PORTNAME}-cfd/${PORTNAME}-cfd/ISAAC%20Version%20${PORTVERSION}
DISTFILES= ${PORTNAME}src.4_2${EXTRACT_SUFX} ${PORTNAME}mk.4_2${EXTRACT_SUFX}
diff --git a/science/kalzium/Makefile b/science/kalzium/Makefile
index df04371ae0a3..9adc74d71b49 100644
--- a/science/kalzium/Makefile
+++ b/science/kalzium/Makefile
@@ -2,6 +2,7 @@
PORTNAME= kalzium
PORTVERSION= ${KDE4_VERSION}
+PORTREVISION= 1
CATEGORIES= science kde
MASTER_SITES= ${MASTER_SITE_KDE}
MASTER_SITE_SUBDIR= ${KDE4_BRANCH}/${PORTVERSION}/src
diff --git a/science/libctl/Makefile b/science/libctl/Makefile
index 78a9a684f554..2ae8f8d81fa1 100644
--- a/science/libctl/Makefile
+++ b/science/libctl/Makefile
@@ -3,6 +3,7 @@
PORTNAME= libctl
PORTVERSION= 3.2.1
+PORTREVISION= 1
CATEGORIES= science math
MASTER_SITES= http://ab-initio.mit.edu/libctl/
diff --git a/science/libghemical/Makefile b/science/libghemical/Makefile
index fca3d60c7bb4..3398584bf7b8 100644
--- a/science/libghemical/Makefile
+++ b/science/libghemical/Makefile
@@ -3,6 +3,7 @@
PORTNAME= libghemical
PORTVERSION= 3.0.0
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= http://bioinformatics.org/ghemical/download/release20111012/ \
http://bioinformatics.org/ghemical/download/current
diff --git a/science/mbdyn/Makefile b/science/mbdyn/Makefile
index 81503ac10678..b935535d93d6 100644
--- a/science/mbdyn/Makefile
+++ b/science/mbdyn/Makefile
@@ -3,6 +3,7 @@
PORTNAME= mbdyn
PORTVERSION= 1.4.0
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= http://www.aero.polimi.it/~masarati/Download/mbdyn/
diff --git a/science/mcstas/Makefile b/science/mcstas/Makefile
index cf68a2c4380e..b48da8339ffa 100644
--- a/science/mcstas/Makefile
+++ b/science/mcstas/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mcstas
PORTVERSION= 1.12c
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://www.mcstas.org/download/ \
http://www.c-s.li/ports/
diff --git a/science/meep/Makefile b/science/meep/Makefile
index 9918389152d1..63bbe293f478 100644
--- a/science/meep/Makefile
+++ b/science/meep/Makefile
@@ -3,6 +3,7 @@
PORTNAME= meep
PORTVERSION= 1.2
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/meep/
diff --git a/science/mpb/Makefile b/science/mpb/Makefile
index f0967576de19..79c91d13f0e2 100644
--- a/science/mpb/Makefile
+++ b/science/mpb/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mpb
PORTVERSION= 1.4.2
-PORTREVISION= 12
+PORTREVISION= 13
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/mpb/
diff --git a/science/mpqc/Makefile b/science/mpqc/Makefile
index f70f6510e21b..f29953cee0f3 100644
--- a/science/mpqc/Makefile
+++ b/science/mpqc/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mpqc
PORTVERSION= 2.3.1
-PORTREVISION= 16
+PORTREVISION= 17
CATEGORIES= science parallel
MASTER_SITES= SF
diff --git a/science/ncs/Makefile b/science/ncs/Makefile
index f98b55fb4c54..2a260f3c77b8 100644
--- a/science/ncs/Makefile
+++ b/science/ncs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ncs
PORTVERSION= 2.0.4
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science parallel
MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/
DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g}
diff --git a/science/peekabot/Makefile b/science/peekabot/Makefile
index b98eeb91ff1c..1321a139e025 100644
--- a/science/peekabot/Makefile
+++ b/science/peekabot/Makefile
@@ -3,7 +3,7 @@
PORTNAME= peekabot
PORTVERSION= 0.8.6
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTVERSION:R}.x
diff --git a/science/pnetcdf/Makefile b/science/pnetcdf/Makefile
index ded83f628d5f..ca52f2fba4f9 100644
--- a/science/pnetcdf/Makefile
+++ b/science/pnetcdf/Makefile
@@ -3,6 +3,7 @@
PORTNAME= pnetcdf
PORTVERSION= 1.3.1
+PORTREVISION= 1
CATEGORIES= science parallel
MASTER_SITES= http://ftp.mcs.anl.gov/pub/parallel-netcdf/ \
LOCAL/sunpoet
diff --git a/science/psi3/Makefile b/science/psi3/Makefile
index c1bbf1bfcc40..b684c1ed9364 100644
--- a/science/psi3/Makefile
+++ b/science/psi3/Makefile
@@ -3,7 +3,7 @@
PORTNAME= psi3
PORTVERSION= 3.4.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= SF/psicode/psi/${PORTVERSION} \
http://www.psicode.org/doc/:doc \
diff --git a/science/psychopy/Makefile b/science/psychopy/Makefile
index 96dbb6881b59..d20e17e0287f 100644
--- a/science/psychopy/Makefile
+++ b/science/psychopy/Makefile
@@ -3,6 +3,7 @@
PORTNAME= psychopy
PORTVERSION= 1.77.00
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= ${MASTER_SITE_GOOGLE_CODE}
DISTNAME= PsychoPy-${PORTVERSION}
diff --git a/science/py-h5py/Makefile b/science/py-h5py/Makefile
index 2b3e4f931d2b..138da15890ca 100644
--- a/science/py-h5py/Makefile
+++ b/science/py-h5py/Makefile
@@ -3,7 +3,7 @@
PORTNAME= h5py
PORTVERSION= 1.2.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science python
MASTER_SITES= ${MASTER_SITE_GOOGLE_CODE}
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-hcluster/Makefile b/science/py-hcluster/Makefile
index ffbe0b558361..99d4c6e1eb1d 100644
--- a/science/py-hcluster/Makefile
+++ b/science/py-hcluster/Makefile
@@ -3,7 +3,7 @@
PORTNAME= hcluster
PORTVERSION= 0.2.0
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-mdp/Makefile b/science/py-mdp/Makefile
index daecd73a5820..fb6f22033fe2 100644
--- a/science/py-mdp/Makefile
+++ b/science/py-mdp/Makefile
@@ -3,6 +3,7 @@
PORTNAME= mdp
PORTVERSION= 3.2
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= SF/${PORTNAME}-toolkit/${PORTNAME}-toolkit/${PORTVERSION}
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-mlpy/Makefile b/science/py-mlpy/Makefile
index 40dcdc13dd21..800316f958f5 100644
--- a/science/py-mlpy/Makefile
+++ b/science/py-mlpy/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mlpy
PORTVERSION= 2.2.2
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science python
MASTER_SITES= https://mlpy.fbk.eu/download/src/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-netCDF4/Makefile b/science/py-netCDF4/Makefile
index 045828f5da4b..3027267504d4 100644
--- a/science/py-netCDF4/Makefile
+++ b/science/py-netCDF4/Makefile
@@ -3,6 +3,7 @@
PORTNAME= netCDF4
PORTVERSION= 1.0.5
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= GOOGLE_CODE
PROJECTHOST= netcdf4-python
diff --git a/science/py-obspy/Makefile b/science/py-obspy/Makefile
index c51139a49338..2d3d0d0b7dae 100644
--- a/science/py-obspy/Makefile
+++ b/science/py-obspy/Makefile
@@ -3,7 +3,7 @@
PORTNAME= obspy
PORTVERSION= 0.8.4
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-pupynere/Makefile b/science/py-pupynere/Makefile
index 2bceb7f49dea..08312c4aa18e 100644
--- a/science/py-pupynere/Makefile
+++ b/science/py-pupynere/Makefile
@@ -3,6 +3,7 @@
PORTNAME= pupynere
PORTVERSION= 1.0.15
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-scikit-learn/Makefile b/science/py-scikit-learn/Makefile
index d46f64490c9c..8d12af5619f0 100644
--- a/science/py-scikit-learn/Makefile
+++ b/science/py-scikit-learn/Makefile
@@ -3,6 +3,7 @@
PORTNAME= scikit-learn
PORTVERSION= 0.13.1
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= ${MASTER_SITE_CHEESESHOP}
MASTER_SITE_SUBDIR=source/s/scikit-learn
diff --git a/science/py-scimath/Makefile b/science/py-scimath/Makefile
index ef98f13bea07..a0ff3819b880 100644
--- a/science/py-scimath/Makefile
+++ b/science/py-scimath/Makefile
@@ -3,6 +3,7 @@
PORTNAME= scimath
PORTVERSION= 4.1.2
+PORTREVISION= 1
CATEGORIES= science math python
MASTER_SITES= http://www.enthought.com/repo/ets/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-scipy/Makefile b/science/py-scipy/Makefile
index be6be00ad5c3..0f33cd3d497d 100644
--- a/science/py-scipy/Makefile
+++ b/science/py-scipy/Makefile
@@ -3,6 +3,7 @@
PORTNAME= scipy
PORTVERSION= 0.12.1
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= http://docs.scipy.org/doc/${DISTNAME}/:doc \
SF:source
diff --git a/science/pybrain/Makefile b/science/pybrain/Makefile
index 6a7d3638070c..c3a1127cd149 100644
--- a/science/pybrain/Makefile
+++ b/science/pybrain/Makefile
@@ -3,6 +3,7 @@
PORTNAME= pybrain
PORTVERSION= 0.3
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
DISTNAME= PyBrain-${PORTVERSION}
diff --git a/science/pycdf/Makefile b/science/pycdf/Makefile
index 557efe259677..9d1a552aafa8 100644
--- a/science/pycdf/Makefile
+++ b/science/pycdf/Makefile
@@ -3,6 +3,7 @@
PORTNAME= pycdf
PORTVERSION= 0.6.3
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= SF/pysclint/${PORTNAME}/${PORTNAME}-${PORTVERSION}b
DISTNAME= ${PORTNAME}-0.6-3b
diff --git a/science/pynn/Makefile b/science/pynn/Makefile
index c7dc28bedfc8..23f88cbeb50f 100644
--- a/science/pynn/Makefile
+++ b/science/pynn/Makefile
@@ -3,6 +3,7 @@
PORTNAME= pynn
PORTVERSION= 0.7.5
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/pyteomics/Makefile b/science/pyteomics/Makefile
index 191fc79afb5c..7d1f22339b1d 100644
--- a/science/pyteomics/Makefile
+++ b/science/pyteomics/Makefile
@@ -2,6 +2,7 @@
PORTNAME= pyteomics
PORTVERSION= 2.1.5
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/ruby-dcl/Makefile b/science/ruby-dcl/Makefile
index 517ac355a7e0..c29e0b561a42 100644
--- a/science/ruby-dcl/Makefile
+++ b/science/ruby-dcl/Makefile
@@ -3,6 +3,7 @@
PORTNAME= dcl
PORTVERSION= 1.7.0
+PORTREVISION= 1
CATEGORIES= science graphics ruby
MASTER_SITES= http://ruby.gfd-dennou.org/products/ruby-dcl/release/ \
http://dennou-h.gfd-dennou.org/library/ruby/products/ruby-dcl/release/ \
diff --git a/science/ruby-gphys/Makefile b/science/ruby-gphys/Makefile
index 60e3f9b2937e..a0680d0148ee 100644
--- a/science/ruby-gphys/Makefile
+++ b/science/ruby-gphys/Makefile
@@ -3,6 +3,7 @@
PORTNAME= gphys
PORTVERSION= 1.2.2
+PORTREVISION= 1
CATEGORIES= science ruby
MASTER_SITES= http://ruby.gfd-dennou.org/products/gphys/release/ \
http://dennou-h.gfd-dennou.org/library/ruby/products/gphys/release/ \
diff --git a/science/ruby-netcdf/Makefile b/science/ruby-netcdf/Makefile
index aa2a72f164f8..007114410714 100644
--- a/science/ruby-netcdf/Makefile
+++ b/science/ruby-netcdf/Makefile
@@ -3,6 +3,7 @@
PORTNAME= netcdf
PORTVERSION= 0.6.6
+PORTREVISION= 1
CATEGORIES= science ruby
MASTER_SITES= http://ruby.gfd-dennou.org/products/ruby-netcdf/release/ \
http://dennou-h.gfd-dennou.org/library/ruby/products/ruby-netcdf/release/ \
diff --git a/science/v_sim/Makefile b/science/v_sim/Makefile
index 69d6b019ab31..c097c9868623 100644
--- a/science/v_sim/Makefile
+++ b/science/v_sim/Makefile
@@ -3,7 +3,7 @@
PORTNAME= v_sim
PORTVERSION= 3.6.1.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/download/
diff --git a/science/veusz/Makefile b/science/veusz/Makefile
index e78e437eea2b..3e3b51b74e06 100644
--- a/science/veusz/Makefile
+++ b/science/veusz/Makefile
@@ -3,6 +3,7 @@
PORTNAME= veusz
PORTVERSION= 1.17.1
+PORTREVISION= 1
CATEGORIES= science kde
MASTER_SITES= http://download.gna.org/veusz/