diff options
| -rw-r--r-- | science/Makefile | 1 | ||||
| -rw-r--r-- | science/jmol/Makefile | 83 | ||||
| -rw-r--r-- | science/jmol/distinfo | 9 | ||||
| -rw-r--r-- | science/jmol/pkg-descr | 9 | ||||
| -rw-r--r-- | science/jmol/pkg-plist | 100 |
5 files changed, 202 insertions, 0 deletions
diff --git a/science/Makefile b/science/Makefile index 66fe71d6530b..7ad58ae89d76 100644 --- a/science/Makefile +++ b/science/Makefile @@ -62,6 +62,7 @@ SUBDIR += hdf5 SUBDIR += ics SUBDIR += isaac-cfd + SUBDIR += jmol SUBDIR += kmovisto SUBDIR += kst SUBDIR += lamprop diff --git a/science/jmol/Makefile b/science/jmol/Makefile new file mode 100644 index 000000000000..0d362d6fd9a1 --- /dev/null +++ b/science/jmol/Makefile @@ -0,0 +1,83 @@ +# Ports collection makefile for: jmol +# Date created: May 11, 2008 +# Whom: Wen heping <wenheping@gmail.com> +# +# $FreeBSD$ +# + +PORTNAME= jmol +PORTVERSION= 11.4.2 +CATEGORIES= science java +MASTER_SITES= SF:source1 \ + http://jmol.svn.sourceforge.net/viewvc/*checkout*/jmol/trunk/Jmol/selfSignedCertificate/:source2 +DISTFILES= ${PORTNAME}-${PORTVERSION}-full.tar.gz:source1 \ + selfSignedCertificate.cer:source2 \ + selfSignedCertificate.store:source2 +EXTRACT_ONLY= ${PORTNAME}-${PORTVERSION}-full.tar.gz + +MAINTAINER= wenheping@gmail.com +COMMENT= An Open-Source Java Viewer for Chemical Structures in 3D + +USE_JAVA= yes +JAVA_VERSION= 1.4+ +WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} +JMOL_FILES= Jmol.jar JmolApplet.jar JmolApplet0.jar \ + JmolApplet0_Core.jar JmolApplet0_Jars.jar \ + JmolApplet0_Jvxl.jar JmolApplet0_Main.jar \ + JmolApplet0_Popup.jar JmolApplet0_Quantum.jar \ + JmolApplet0_ReadersCifPdb.jar JmolApplet0_ReadersMolXyz.jar \ + JmolApplet0_ReadersMore.jar JmolApplet0_ReadersXml.jar \ + JmolApplet0_ShapeBio.jar JmolApplet0_ShapeSpecial.jar \ + JmolApplet0_Smiles.jar JmolApplet0_Viewer.jar \ + JmolApplet0_i18n.jar +JMOL_FILES_EXT= Jmol.js +SIGN_DIR= ${WRKSRC}/selfSignedCertificate + +.if !defined(WITHOUT_COMPILE) +USE_ANT= yes +ALL_TARGET= all +.if !defined(NOPORTDOCS) +ALL_TARGET= main +.endif +.else +NO_BUILD= yes +.endif + +.include <bsd.port.pre.mk> + +pre-fetch: + @${ECHO_MSG} "" + @${ECHO_MSG} "You may use the following build options:" + @${ECHO_MSG} "" + @${ECHO_MSG} " WITHOUT_COMPILE=yes Install the pre-compiled .jar file" + @${ECHO_MSG} "" + +post-extract: + @${MKDIR} ${SIGN_DIR} + @${CP} ${DISTDIR}/selfSignedCertificate.cer ${SIGN_DIR} + @${CP} ${DISTDIR}/selfSignedCertificate.store ${SIGN_DIR} + +do-install: +.for j in ${JMOL_FILES_EXT} + ${INSTALL_DATA} ${WRKSRC}/${j} ${JAVAJARDIR} +.endfor + +.if defined(WITHOUT_COMPILE) +.for j in ${JMOL_FILES} + ${INSTALL_DATA} ${WRKSRC}/build/${j} ${JAVAJARDIR} +.endfor +.else +.for j in ${JMOL_FILES} + ${INSTALL_DATA} ${WRKSRC}/${j} ${JAVAJARDIR} +.endfor +.endif + +.if !defined(NOPORTDOCS) + @${ECHO_MSG} -n ">> Installing documentation in ${DOCSDIR}..." + @cd ${WRKSRC}/doc && ${FIND} . -type d -exec ${MKDIR} ${DOCSDIR}/{} \; + @cd ${WRKSRC}/doc && ${FIND} . -type f -exec \ + ${INSTALL_DATA} {} ${DOCSDIR}/{} \; + @${ECHO_MSG} " [DONE]" +.endif + +.include <bsd.port.post.mk> diff --git a/science/jmol/distinfo b/science/jmol/distinfo new file mode 100644 index 000000000000..9799cd25f1f9 --- /dev/null +++ b/science/jmol/distinfo @@ -0,0 +1,9 @@ +MD5 (jmol-11.4.2-full.tar.gz) = 58b0cd6a38be0c94d4943c1e74a7d8b5 +SHA256 (jmol-11.4.2-full.tar.gz) = 8890805394a8d0d0260739e230b30bbd3eb6c915fd5c6c6fc21478be9e29ecaf +SIZE (jmol-11.4.2-full.tar.gz) = 15926387 +MD5 (selfSignedCertificate.cer) = ec6c4b413be88a8fab584399cc931d55 +SHA256 (selfSignedCertificate.cer) = 0fa14fd5f21593a328ba4439ac17b3b507969d71a2734e392239b83ae8ec2920 +SIZE (selfSignedCertificate.cer) = 735 +MD5 (selfSignedCertificate.store) = bf2be32212c831e4fa369809a639b75d +SHA256 (selfSignedCertificate.store) = 81b69722530d94dc599ce79382a3386cce518baa7ab79fbb530d13483b51bed5 +SIZE (selfSignedCertificate.store) = 1516 diff --git a/science/jmol/pkg-descr b/science/jmol/pkg-descr new file mode 100644 index 000000000000..cb5cca96ba7e --- /dev/null +++ b/science/jmol/pkg-descr @@ -0,0 +1,9 @@ +Jmol is a Java molecular viewer for +three-dimensional chemical structures. +Features include reading a variety +of file types and output from quantum +chemistry programs, and animation of +multi-frame files and computed normal +modes from quantum programs. + +WWW: http://sourceforge.net/projects/jmol/ diff --git a/science/jmol/pkg-plist b/science/jmol/pkg-plist new file mode 100644 index 000000000000..c0e8119d369b --- /dev/null +++ b/science/jmol/pkg-plist @@ -0,0 +1,100 @@ +%%DOCSDIR%%/JmolAppletGuide.html +%%DOCSDIR%%/JmolDevelopersGuide.html +%%DOCSDIR%%/JmolUserGuide/ch01.html +%%DOCSDIR%%/JmolUserGuide/ch02.html +%%DOCSDIR%%/JmolUserGuide/ch02s02.html +%%DOCSDIR%%/JmolUserGuide/ch02s03.html +%%DOCSDIR%%/JmolUserGuide/ch02s04.html +%%DOCSDIR%%/JmolUserGuide/ch02s05.html +%%DOCSDIR%%/JmolUserGuide/ch02s06.html +%%DOCSDIR%%/JmolUserGuide/ch02s07.html +%%DOCSDIR%%/JmolUserGuide/ch03.html +%%DOCSDIR%%/JmolUserGuide/ch03s02.html +%%DOCSDIR%%/JmolUserGuide/ch03s03.html +%%DOCSDIR%%/JmolUserGuide/ch03s04.html +%%DOCSDIR%%/JmolUserGuide/ch03s05.html +%%DOCSDIR%%/JmolUserGuide/ch04.html +%%DOCSDIR%%/JmolUserGuide/index.html +%%DOCSDIR%%/docbook-xml-4.4.zip +%%DOCSDIR%%/docbook-xsl-1.73.2.tar.gz +%%DOCSDIR%%/ibm.license.html +%%DOCSDIR%%/jcfl-1.2.6-source.tar.gz +%%DOCSDIR%%/jpegEncoder.license +%%DOCSDIR%%/lgpl.license +%%DOCSDIR%%/rasmol26.license +%%DOCSDIR%%/source/JmolAppletGuide.docbook.xml +%%DOCSDIR%%/source/JmolAppletGuide_de.docbook.xml +%%DOCSDIR%%/source/JmolAppletGuide_fr.docbook.xml +%%DOCSDIR%%/source/JmolDevelopersGuide.docbook.xml +%%DOCSDIR%%/source/JmolDevelopersGuide_de.docbook.xml +%%DOCSDIR%%/source/JmolDevelopersGuide_fr.docbook.xml +%%DOCSDIR%%/source/JmolGuide.docbook.xml +%%DOCSDIR%%/source/JmolGuide_de.docbook.xml +%%DOCSDIR%%/source/JmolGuide_fr.docbook.xml +%%DOCSDIR%%/source/JmolHistory.xml +%%DOCSDIR%%/source/JmolHistoryToHtml.xsl +%%DOCSDIR%%/source/JmolHistory_fr.xml +%%DOCSDIR%%/source/JmolHistory_nl.xml +%%DOCSDIR%%/source/applet/browsers.docbook.xml +%%DOCSDIR%%/source/applet/browsers_fr.docbook.xml +%%DOCSDIR%%/source/applet/hardware.docbook.xml +%%DOCSDIR%%/source/applet/hardware_fr.docbook.xml +%%DOCSDIR%%/source/applet/intro.docbook.xml +%%DOCSDIR%%/source/applet/intro_fr.docbook.xml +%%DOCSDIR%%/source/applet/serverconfig.docbook.xml +%%DOCSDIR%%/source/applet/serverconfig_fr.docbook.xml +%%DOCSDIR%%/source/applet/usage.docbook.xml +%%DOCSDIR%%/source/applet/usage_fr.docbook.xml +%%DOCSDIR%%/source/guide/commandline.docbook.xml +%%DOCSDIR%%/source/guide/commandline_fr.docbook.xml +%%DOCSDIR%%/source/guide/intro.docbook.xml +%%DOCSDIR%%/source/guide/intro_fr.docbook.xml +%%DOCSDIR%%/source/guide/menus.docbook.xml +%%DOCSDIR%%/source/guide/menus_fr.docbook.xml +%%DOCSDIR%%/source/guide/scriptCommands.docbook.xml +%%DOCSDIR%%/source/guide/scripts.docbook.xml +%%DOCSDIR%%/source/guide/scripts_fr.docbook.xml +%%DOCSDIR%%/source/history/changes.xml +%%DOCSDIR%%/source/history/changes_fr.xml +%%DOCSDIR%%/source/history/changes_nl.xml +%%DOCSDIR%%/source/history/contributors.xml +%%DOCSDIR%%/source/po/JmolAppletGuide.de.po +%%DOCSDIR%%/source/po/JmolAppletGuide.pot +%%DOCSDIR%%/source/po/JmolDevelopersGuide.de.po +%%DOCSDIR%%/source/po/JmolDevelopersGuide.pot +%%DOCSDIR%%/source/po/JmolGuide.de.po +%%DOCSDIR%%/source/po/JmolGuide.pot +%%DOCSDIR%%/source/xml2po-modes/docbook.py +%%DOCSDIR%%/source/xml2po-modes/empty.py +%%DOCSDIR%%/source/xml2po-modes/gs.py +%%DOCSDIR%%/source/xml2po.bat +%%DOCSDIR%%/source/xml2po.py +%%DOCSDIR%%/source/xml2po.sh +%%DOCSDIR%%/splash.ai +%%JAVAJARDIR%%/Jmol.jar +%%JAVAJARDIR%%/Jmol.js +%%JAVAJARDIR%%/JmolApplet.jar +%%JAVAJARDIR%%/JmolApplet0.jar +%%JAVAJARDIR%%/JmolApplet0_Core.jar +%%JAVAJARDIR%%/JmolApplet0_Jars.jar +%%JAVAJARDIR%%/JmolApplet0_Jvxl.jar +%%JAVAJARDIR%%/JmolApplet0_Main.jar +%%JAVAJARDIR%%/JmolApplet0_Popup.jar +%%JAVAJARDIR%%/JmolApplet0_Quantum.jar +%%JAVAJARDIR%%/JmolApplet0_ReadersCifPdb.jar +%%JAVAJARDIR%%/JmolApplet0_ReadersMolXyz.jar +%%JAVAJARDIR%%/JmolApplet0_ReadersMore.jar +%%JAVAJARDIR%%/JmolApplet0_ReadersXml.jar +%%JAVAJARDIR%%/JmolApplet0_ShapeBio.jar +%%JAVAJARDIR%%/JmolApplet0_ShapeSpecial.jar +%%JAVAJARDIR%%/JmolApplet0_Smiles.jar +%%JAVAJARDIR%%/JmolApplet0_Viewer.jar +%%JAVAJARDIR%%/JmolApplet0_i18n.jar +@dirrm %%DOCSDIR%%/source/xml2po-modes +@dirrm %%DOCSDIR%%/source/po +@dirrm %%DOCSDIR%%/source/history +@dirrm %%DOCSDIR%%/source/guide +@dirrm %%DOCSDIR%%/source/applet +@dirrm %%DOCSDIR%%/source +@dirrm %%DOCSDIR%%/JmolUserGuide +@dirrm %%DOCSDIR%% |