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-rw-r--r--benchmarks/hpl/Makefile2
-rw-r--r--benchmarks/imb/Makefile2
-rw-r--r--benchmarks/mdtest/Makefile2
-rw-r--r--cad/scotch/Makefile2
-rw-r--r--math/blacs/Makefile2
-rw-r--r--math/blocksolve95/Makefile2
-rw-r--r--math/mumps/Makefile2
-rw-r--r--math/parmetis/Makefile2
-rw-r--r--math/scalapack/Makefile2
-rw-r--r--math/sdpara/Makefile2
-rw-r--r--math/spooles/Makefile2
-rw-r--r--net/mpich2/Makefile6
-rw-r--r--net/mpich2/distinfo4
-rw-r--r--net/mpich2/files/patch-Makefile.in33
-rw-r--r--net/mpich2/files/patch-src_mpe2_src_sbin_mpeinstall.in18
-rw-r--r--net/mpich2/files/patch-src_openpa_Makefile.in35
-rw-r--r--net/mpich2/files/patch-src_packaging_pkgconfig_Makefile.in11
-rw-r--r--net/mpich2/pkg-plist493
-rw-r--r--science/fvm/Makefile4
-rw-r--r--science/gromacs/Makefile2
-rw-r--r--science/ncs/Makefile2
-rw-r--r--science/pnetcdf/Makefile2
22 files changed, 178 insertions, 454 deletions
diff --git a/benchmarks/hpl/Makefile b/benchmarks/hpl/Makefile
index 4f8d0ebfa1a3..7a6e8b47f403 100644
--- a/benchmarks/hpl/Makefile
+++ b/benchmarks/hpl/Makefile
@@ -3,7 +3,7 @@
PORTNAME= hpl
PORTVERSION= 2.1
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= benchmarks
MASTER_SITES= ${MASTER_SITE_NETLIB}
MASTER_SITE_SUBDIR= benchmark/hpl
diff --git a/benchmarks/imb/Makefile b/benchmarks/imb/Makefile
index 03e98c7c472a..9eac8dd0c2d5 100644
--- a/benchmarks/imb/Makefile
+++ b/benchmarks/imb/Makefile
@@ -3,7 +3,7 @@
PORTNAME= imb
PORTVERSION= 3.0
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= benchmarks parallel
MASTER_SITES= ${MASTER_SITE_LOCAL} \
http://cache-www.intel.com/cd/00/00/32/71/
diff --git a/benchmarks/mdtest/Makefile b/benchmarks/mdtest/Makefile
index 3157c1d3f517..da118dcfce65 100644
--- a/benchmarks/mdtest/Makefile
+++ b/benchmarks/mdtest/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mdtest
PORTVERSION= 1.9.3
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= benchmarks
MASTER_SITES= SF/${PORTNAME}/${PORTNAME}%20latest/${PORTNAME}-${PORTVERSION}
EXTRACT_SUFX= .tgz
diff --git a/cad/scotch/Makefile b/cad/scotch/Makefile
index e800af514462..ccdc4327fe2f 100644
--- a/cad/scotch/Makefile
+++ b/cad/scotch/Makefile
@@ -3,7 +3,7 @@
PORTNAME= scotch
DISTVERSION= 5.1.12b_esmumps
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= cad science
MASTER_SITES= https://gforge.inria.fr/frs/download.php/28978/
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/blacs/Makefile b/math/blacs/Makefile
index ef00f11fad43..c2170bf011a5 100644
--- a/math/blacs/Makefile
+++ b/math/blacs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= blacs
PORTVERSION= 1.7
-PORTREVISION= 20
+PORTREVISION= 21
CATEGORIES= math
MASTER_SITES= ${MASTER_SITE_NETLIB}
MASTER_SITE_SUBDIR=blacs
diff --git a/math/blocksolve95/Makefile b/math/blocksolve95/Makefile
index 54800232a1a8..cf37d14bb52c 100644
--- a/math/blocksolve95/Makefile
+++ b/math/blocksolve95/Makefile
@@ -3,7 +3,7 @@
PORTNAME= blocksolve95
PORTVERSION= 3.0
-PORTREVISION= 14
+PORTREVISION= 15
CATEGORIES= math parallel
MASTER_SITES= ftp://ftp.mcs.anl.gov/pub/BlockSolve95/ \
http://ftp.mcs.anl.gov/pub/BlockSolve95/
diff --git a/math/mumps/Makefile b/math/mumps/Makefile
index 3f2a6e329b21..f24c14d1a432 100644
--- a/math/mumps/Makefile
+++ b/math/mumps/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mumps
PORTVERSION= 4.10.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
MASTER_SITES= http://mumps.enseeiht.fr/ \
http://graal.ens-lyon.fr/MUMPS/ \
diff --git a/math/parmetis/Makefile b/math/parmetis/Makefile
index bd7e7bdc6794..07d8ff473786 100644
--- a/math/parmetis/Makefile
+++ b/math/parmetis/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ParMetis
PORTVERSION= 4.0
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= math parallel
MASTER_SITES= http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/%SUBDIR%/
MASTER_SITE_SUBDIR= . OLD
diff --git a/math/scalapack/Makefile b/math/scalapack/Makefile
index 7ac0aa093999..29a3194e3cd9 100644
--- a/math/scalapack/Makefile
+++ b/math/scalapack/Makefile
@@ -3,7 +3,7 @@
PORTNAME= scalapack
PORTVERSION= 2.0.2
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
MASTER_SITES= ${MASTER_SITE_NETLIB}
MASTER_SITE_SUBDIR=${PORTNAME}
diff --git a/math/sdpara/Makefile b/math/sdpara/Makefile
index f5288544c2d6..69c5334ffc01 100644
--- a/math/sdpara/Makefile
+++ b/math/sdpara/Makefile
@@ -3,7 +3,7 @@
PORTNAME= sdpara
PORTVERSION= 7.2.1
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= math parallel
MASTER_SITES= http://sdpa.indsys.chuo-u.ac.jp/sdpa/files/
DISTFILES= ${SRCFILE}#${MANUALFILE}
diff --git a/math/spooles/Makefile b/math/spooles/Makefile
index 86b4dae73d01..da23d0566ff7 100644
--- a/math/spooles/Makefile
+++ b/math/spooles/Makefile
@@ -3,7 +3,7 @@
PORTNAME= spooles
PORTVERSION= 2.2
-PORTREVISION= 11
+PORTREVISION= 12
CATEGORIES= math
MASTER_SITES= http://www.netlib.org/linalg/spooles/
.ifdef WITH_MPI
diff --git a/net/mpich2/Makefile b/net/mpich2/Makefile
index 2a568cb99bad..539eaf315a62 100644
--- a/net/mpich2/Makefile
+++ b/net/mpich2/Makefile
@@ -2,7 +2,7 @@
# $FreeBSD$
PORTNAME= mpich2
-DISTVERSION= 1.4.1p1
+DISTVERSION= 1.5
PORTEPOCH= 5
CATEGORIES= net java parallel
MASTER_SITES= http://www.mcs.anl.gov/research/projects/mpich2/downloads/tarballs/${DISTVERSION}/
@@ -55,8 +55,8 @@ NOCCACHE= yes
CONFLICTS= lam-7.* mpd-[0-9]* mpiexec-0.*
MAKE_JOBS_UNSAFE= yes
-VERSO= 3.3
-VERSOM= ${VERSO:R}
+VERSO= 8.0.1
+VERSOM= ${VERSO:R:R}
PLIST_SUB= VER=${VERSO} VERM=${VERSOM}
SUB_FILES= pkg-message
diff --git a/net/mpich2/distinfo b/net/mpich2/distinfo
index 018697f621fa..1a6def9bf5cb 100644
--- a/net/mpich2/distinfo
+++ b/net/mpich2/distinfo
@@ -1,2 +1,2 @@
-SHA256 (mpich/mpich2-1.4.1p1.tar.gz) = a20f798ceaad6b0161ddecac98623b65d6a4033072f39ced13b9043916e3d1ee
-SIZE (mpich/mpich2-1.4.1p1.tar.gz) = 19502854
+SHA256 (mpich/mpich2-1.5.tar.gz) = 7175926fc2e4230f00201e880318c08de4f949c0dbe167fe1b2e256ac79d5f66
+SIZE (mpich/mpich2-1.5.tar.gz) = 22826035
diff --git a/net/mpich2/files/patch-Makefile.in b/net/mpich2/files/patch-Makefile.in
index 2d393ec56a98..d4de96233d19 100644
--- a/net/mpich2/files/patch-Makefile.in
+++ b/net/mpich2/files/patch-Makefile.in
@@ -1,24 +1,11 @@
---- Makefile.in.orig 2011-09-01 20:55:44.000000000 +0200
-+++ Makefile.in 2014-08-25 19:43:34.000000000 +0200
-@@ -202,16 +202,16 @@
- if [ -s $(srcdir)/doc/installguide/install.pdf ] ; then $(INSTALL_DATA) $(srcdir)/doc/installguide/install.pdf ${DESTDIR}${docdir}/install.pdf ; fi
- if [ -s $(srcdir)/doc/smpd/smpd_pmi.pdf ] ; then $(INSTALL_DATA) $(srcdir)/doc/smpd/smpd_pmi.pdf ${DESTDIR}${docdir}/smpd_pmi.pdf ; fi
- if [ -s $(srcdir)/doc/logging/logging.pdf ] ; then $(INSTALL_DATA) $(srcdir)/doc/logging/logging.pdf ${DESTDIR}${docdir}/logging.pdf ; fi
-- (cd src/env && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) prefix=${DESTDIR}${prefix} exec_prefix=${DESTDIR}${exec_prefix} bindir=${DESTDIR}${bindir} libdir=${DESTDIR}${libdir} includedir=${DESTDIR}${includedir} install)
-- (cd src/packaging/pkgconfig && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) prefix=${DESTDIR}${prefix} exec_prefix=${DESTDIR}${exec_prefix} bindir=${DESTDIR}${bindir} libdir=${DESTDIR}${libdir} includedir=${DESTDIR}${includedir} install)
-- (cd src/packaging/envmods && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) prefix=${DESTDIR}${prefix} exec_prefix=${DESTDIR}${exec_prefix} bindir=${DESTDIR}${bindir} libdir=${DESTDIR}${libdir} includedir=${DESTDIR}${includedir} install)
-+ (cd src/env && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) install)
-+ (cd src/packaging/pkgconfig && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) install)
-+ (cd src/packaging/envmods && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) install)
- for dir in @bindings_dirs@ - ; do \
- if [ "$$dir" = "-" ] ; then break ; fi ;\
-- (cd $$dir && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) prefix=${DESTDIR}${prefix} exec_prefix=${DESTDIR}${exec_prefix} bindir=${DESTDIR}${bindir} libdir=${DESTDIR}${libdir} includedir=${DESTDIR}${includedir} install) ;\
-+ (cd $$dir && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) install) ;\
- done
- for dir in @other_install_dirs@ - ; do \
- if [ "$$dir" = "-" ] ; then break ; fi ;\
-- (cd $$dir && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) prefix=${DESTDIR}${prefix} exec_prefix=${DESTDIR}${exec_prefix} bindir=${DESTDIR}${bindir} libdir=${DESTDIR}${libdir} includedir=${DESTDIR}${includedir} install) ;\
-+ (cd $$dir && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) install) ;\
- done
+--- Makefile.in.orig 2012-10-08 21:02:46.000000000 +0200
++++ Makefile.in 2014-08-31 22:55:10.000000000 +0200
+@@ -6153,7 +6153,7 @@
+ CLEAN_LOCAL_TARGETS = test-clean $(am__append_125)
- install-strip:
+ # used by nodist_pkgconfig_DATA
+-pkgconfigdir = $(libdir)/pkgconfig
++pkgconfigdir = $(libdir)data/pkgconfig
+
+ # contains all of the "errnames.txt" files that are used by maint/extracterrmsgs
+ # to build src/mpi/errhan/defmsg.h
diff --git a/net/mpich2/files/patch-src_mpe2_src_sbin_mpeinstall.in b/net/mpich2/files/patch-src_mpe2_src_sbin_mpeinstall.in
index 80c96bad63f4..a391604385d8 100644
--- a/net/mpich2/files/patch-src_mpe2_src_sbin_mpeinstall.in
+++ b/net/mpich2/files/patch-src_mpe2_src_sbin_mpeinstall.in
@@ -1,6 +1,6 @@
---- src/mpe2/sbin/mpeinstall.in.orig 2009-10-16 01:50:22.000000000 +0200
-+++ src/mpe2/sbin/mpeinstall.in 2014-08-20 22:43:03.000000000 +0200
-@@ -529,7 +529,7 @@
+--- src/mpe2/sbin/mpeinstall.in.orig 2012-04-30 22:12:21.000000000 +0200
++++ src/mpe2/sbin/mpeinstall.in 2014-08-31 12:34:38.000000000 +0200
+@@ -531,7 +531,7 @@
# so $docdir (with NULL PACKAGE) is appended to dirlist for removal.
savedPACKAGE=$PACKAGE
PACKAGE=""
@@ -9,7 +9,7 @@
PACKAGE=$savedPACKAGE
fi
-@@ -577,15 +577,15 @@
+@@ -579,15 +579,15 @@
# ie INSTALL $top_srcdir/doc $docdir
# INSTALL $top_srcdir/man $mandir
# INSTALL $top_srcdir/html $htmldir
@@ -34,15 +34,7 @@
# Remove old uninstall file
if [ "$appendUninstall" = 0 -a -f $UNINSTALLFILE ] ; then
-@@ -632,7 +632,6 @@
-
- if [ "$appendUninstall" = 0 ] ; then
- echo "$RM -f $sbindir/mpeuninstall" >> $UNINSTALLFILE
-- echo "$RM -f $UNINSTALLFILE" >> $UNINSTALLFILE
- fi
-
- # Add the directory removes to the UNINSTALL file
-@@ -643,8 +642,8 @@
+@@ -649,8 +649,8 @@
if [ "$appendUninstall" = 0 ] ; then
cp $UNINSTALLFILE $sbinbuild_dir/mpeuninstall
#
diff --git a/net/mpich2/files/patch-src_openpa_Makefile.in b/net/mpich2/files/patch-src_openpa_Makefile.in
index c7e4975efbe7..f8008ca54f2a 100644
--- a/net/mpich2/files/patch-src_openpa_Makefile.in
+++ b/net/mpich2/files/patch-src_openpa_Makefile.in
@@ -1,7 +1,7 @@
---- ./src/openpa/Makefile.in.orig 2010-02-22 23:22:28.000000000 +0100
-+++ ./src/openpa/Makefile.in 2010-03-10 21:36:17.000000000 +0100
-@@ -229,7 +229,7 @@
- EXTRA_DIST = COPYRIGHT CHANGELOG openpa.pc.in
+--- ./src/openpa/Makefile.in.orig 2012-10-08 21:02:13.000000000 +0200
++++ ./src/openpa/Makefile.in 2014-08-31 18:17:46.000000000 +0200
+@@ -316,7 +316,7 @@
+ EXTRA_DIST = COPYRIGHT CHANGELOG openpa.pc.in VERSION
# pkgconfig files
-pkgconfigdir = $(libdir)/pkgconfig
@@ -9,30 +9,3 @@
pkgconfig_DATA = openpa.pc
all: all-recursive
-@@ -272,16 +272,16 @@
- cd $(top_builddir) && $(SHELL) ./config.status $@
- install-dist_docDATA: $(dist_doc_DATA)
- @$(NORMAL_INSTALL)
-- test -z "$(docdir)" || $(MKDIR_P) "$(DESTDIR)$(docdir)"
-- @list='$(dist_doc_DATA)'; test -n "$(docdir)" || list=; \
-- for p in $$list; do \
-- if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-- echo "$$d$$p"; \
-- done | $(am__base_list) | \
-- while read files; do \
-- echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(docdir)'"; \
-- $(INSTALL_DATA) $$files "$(DESTDIR)$(docdir)" || exit $$?; \
-- done
-+%%PORTDOCS%% test -z "$(docdir)" || $(MKDIR_P) "$(DESTDIR)$(docdir)"
-+%%PORTDOCS%% @list='$(dist_doc_DATA)'; test -n "$(docdir)" || list=; \
-+%%PORTDOCS%% for p in $$list; do \
-+%%PORTDOCS%% if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-+%%PORTDOCS%% echo "$$d$$p"; \
-+%%PORTDOCS%% done | $(am__base_list) | \
-+%%PORTDOCS%% while read files; do \
-+%%PORTDOCS%% echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(docdir)'"; \
-+%%PORTDOCS%% $(INSTALL_DATA) $$files "$(DESTDIR)$(docdir)" || exit $$?; \
-+%%PORTDOCS%% done
-
- uninstall-dist_docDATA:
- @$(NORMAL_UNINSTALL)
diff --git a/net/mpich2/files/patch-src_packaging_pkgconfig_Makefile.in b/net/mpich2/files/patch-src_packaging_pkgconfig_Makefile.in
deleted file mode 100644
index 47ebfe02b049..000000000000
--- a/net/mpich2/files/patch-src_packaging_pkgconfig_Makefile.in
+++ /dev/null
@@ -1,11 +0,0 @@
---- ./src/packaging/pkgconfig/Makefile.in.orig 2009-06-03 03:49:04.000000000 +0200
-+++ ./src/packaging/pkgconfig/Makefile.in 2009-06-22 19:19:08.000000000 +0200
-@@ -18,7 +18,7 @@
- prefix = @prefix@
- libdir = @libdir@
- exec_prefix = @exec_prefix@
--pkgconfigdir = @libdir@/pkgconfig
-+pkgconfigdir = $(LOCALBASE)/libdata/pkgconfig
- MAKE = @MAKE@
- MPILIBNAME = @MPILIBNAME@
- PMPILIBNAME = @PMPILIBNAME@
diff --git a/net/mpich2/pkg-plist b/net/mpich2/pkg-plist
index 8d3a8da7007d..9b96b893a717 100644
--- a/net/mpich2/pkg-plist
+++ b/net/mpich2/pkg-plist
@@ -89,6 +89,7 @@ bin/mpif90
%%PM_MPD%%bin/mpirun.py
%%PM_MPD%%bin/mpirun.pyc
%%PM_MPD%%bin/mpirun.pyo
+bin/parkill
%%JAVA%%bin/rlogTOslog2
%%JAVA%%bin/rlog_check_timeorder
%%JAVA%%bin/rlog_print
@@ -117,7 +118,6 @@ etc/mpicc.conf
etc/mpicxx.conf
etc/mpif77.conf
etc/mpif90.conf
-etc/mpixxx_opts.conf
include/clog_commset.h
include/clog_const.h
include/clog_inttypes.h
@@ -139,7 +139,6 @@ include/mpicxx.h
include/mpif.h
include/mpio.h
include/mpiof.h
-include/mpix.h
include/opa_config.h
include/opa_primitives.h
include/opa_queue.h
@@ -168,6 +167,7 @@ include/primitives/opa_unsafe.h
%%JAVA%%lib/jumpshot_launcher.jar
lib/libampe.a
lib/libfmpich.a
+lib/libfmpich.la
lib/libfmpich.so
lib/libfmpich.so.%%VER%%
lib/libfmpich.so.%%VERM%%
@@ -179,14 +179,17 @@ lib/libmpe_nompi.a
lib/libmpe_nompi_null.a
lib/libmpe_null.a
lib/libmpich.a
+lib/libmpich.la
lib/libmpich.so
lib/libmpich.so.%%VERM%%
lib/libmpich.so.%%VER%%
lib/libmpichcxx.a
+lib/libmpichcxx.la
lib/libmpichcxx.so
lib/libmpichcxx.so.%%VERM%%
lib/libmpichcxx.so.%%VER%%
lib/libmpichf90.a
+lib/libmpichf90.la
lib/libmpichf90.so
lib/libmpichf90.so.%%VERM%%
lib/libmpichf90.so.%%VER%%
@@ -194,7 +197,7 @@ lib/libmpl.a
lib/libmpl.la
lib/libmpl.so
lib/libmpl.so.1
-lib/libmpl.so.1.1.0
+lib/libmpl.so.1.0.0
lib/libopa.a
lib/libopa.la
lib/libopa.so
@@ -212,18 +215,99 @@ lib/mpe_prof.o
%%JAVA%%lib/trace_rlog/libTraceInput.la
%%JAVA%%lib/trace_rlog/libTraceInput.so
%%JAVA%%lib/traceprint.jar
-libdata/pkgconfig/mpich2-c.pc
-libdata/pkgconfig/mpich2-cxx.pc
-libdata/pkgconfig/mpich2-f77.pc
-libdata/pkgconfig/mpich2-f90.pc
+libdata/pkgconfig/mpich2.pc
libdata/pkgconfig/openpa.pc
-%%PORTDOCS%%man/man1/MPI.1.gz
%%PORTDOCS%%man/man1/mpicc.1.gz
%%PORTDOCS%%man/man1/mpicxx.1.gz
%%PORTDOCS%%man/man1/mpiexec.1.gz
%%PORTDOCS%%man/man1/mpif77.1.gz
%%PORTDOCS%%man/man1/mpif90.1.gz
-%%PORTDOCS%%man/man3/MPIX_Group_comm_create.3.gz
+%%PORTDOCS%%man/man3/MPIX_Comm_create_group.3.gz
+%%PORTDOCS%%man/man3/MPIX_Comm_group_failed.3.gz
+%%PORTDOCS%%man/man3/MPIX_Comm_idup.3.gz
+%%PORTDOCS%%man/man3/MPIX_Comm_reenable_anysource.3.gz
+%%PORTDOCS%%man/man3/MPIX_Comm_remote_group_failed.3.gz
+%%PORTDOCS%%man/man3/MPIX_Comm_split_type.3.gz
+%%PORTDOCS%%man/man3/MPIX_Compare_and_swap.3.gz
+%%PORTDOCS%%man/man3/MPIX_Fetch_and_op.3.gz
+%%PORTDOCS%%man/man3/MPIX_Get_accumulate.3.gz
+%%PORTDOCS%%man/man3/MPIX_Iallgather.3.gz
+%%PORTDOCS%%man/man3/MPIX_Iallgatherv.3.gz
+%%PORTDOCS%%man/man3/MPIX_Iallreduce.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ialltoall.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ialltoallv.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ialltoallw.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ibarrier.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ibcast.3.gz
+%%PORTDOCS%%man/man3/MPIX_Iexscan.3.gz
+%%PORTDOCS%%man/man3/MPIX_Igather.3.gz
+%%PORTDOCS%%man/man3/MPIX_Igatherv.3.gz
+%%PORTDOCS%%man/man3/MPIX_Improbe.3.gz
+%%PORTDOCS%%man/man3/MPIX_Imrecv.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ineighbor_allgather.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ineighbor_allgatherv.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ineighbor_alltoall.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ineighbor_alltoallv.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ineighbor_alltoallw.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ireduce.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ireduce_scatter.3.gz
+%%PORTDOCS%%man/man3/MPIX_Ireduce_scatter_block.3.gz
+%%PORTDOCS%%man/man3/MPIX_Iscan.3.gz
+%%PORTDOCS%%man/man3/MPIX_Iscatter.3.gz
+%%PORTDOCS%%man/man3/MPIX_Iscatterv.3.gz
+%%PORTDOCS%%man/man3/MPIX_Mprobe.3.gz
+%%PORTDOCS%%man/man3/MPIX_Mrecv.3.gz
+%%PORTDOCS%%man/man3/MPIX_Neighbor_allgather.3.gz
+%%PORTDOCS%%man/man3/MPIX_Neighbor_allgatherv.3.gz
+%%PORTDOCS%%man/man3/MPIX_Neighbor_alltoall.3.gz
+%%PORTDOCS%%man/man3/MPIX_Neighbor_alltoallv.3.gz
+%%PORTDOCS%%man/man3/MPIX_Neighbor_alltoallw.3.gz
+%%PORTDOCS%%man/man3/MPIX_Raccumulate.3.gz
+%%PORTDOCS%%man/man3/MPIX_Rget.3.gz
+%%PORTDOCS%%man/man3/MPIX_Rget_accumulate.3.gz
+%%PORTDOCS%%man/man3/MPIX_Rput.3.gz
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-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Unpack_external.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Unpublish_name.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Wait.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Waitall.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Waitany.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Waitsome.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_call_errhandler.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_complete.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_create.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_create_errhandler.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_create_keyval.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_delete_attr.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_fence.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_free.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_free_keyval.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_get_attr.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_get_errhandler.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_get_group.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_get_name.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_lock.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_post.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_set_attr.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_set_errhandler.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_set_name.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_start.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_test.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_unlock.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_wait.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Wtick.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Wtime.html
-%%PORTDOCS%%%%DOCSDIR%%/www3/index.htm
%%PORTDOCS%%%%DOCSDIR%%/www4/MPE_Add_RGB_color.html
%%PORTDOCS%%%%DOCSDIR%%/www4/MPE_CaptureFile.html
%%PORTDOCS%%%%DOCSDIR%%/www4/MPE_Close_graphics.html
@@ -1082,53 +864,52 @@ sbin/mpeuninstall
%%PORTDOCS%%%%DOCSDIR%%/www4/MPE_TagsEnd.html
%%PORTDOCS%%%%DOCSDIR%%/www4/MPE_Update.html
%%PORTDOCS%%%%DOCSDIR%%/www4/libmpe.cit
-%%DATADIR%%/examples_collchk/Makefile
-%%DATADIR%%/examples_collchk/composite.c
-%%DATADIR%%/examples_collchk/scatterv.c
-%%DATADIR%%/examples_collchk/time_allreduce.c
-%%DATADIR%%/examples_collchk/time_alltoallv.c
-%%DATADIR%%/examples_collchk/time_alltoallv0.c
-%%DATADIR%%/examples_collchk/time_bcast.c
-%%DATADIR%%/examples_collchk/wrong_composite.c
-%%DATADIR%%/examples_collchk/wrong_int_byte.c
-%%DATADIR%%/examples_collchk/wrong_reals.f
-%%DATADIR%%/examples_collchk/wrong_root.c
-%%DATADIR%%/examples_collchk/wrong_scatterv.c
-%%DATADIR%%/examples_graphics/Makefile
-%%DATADIR%%/examples_graphics/cpi.c
-%%DATADIR%%/examples_graphics/cxgraphics.c
-%%DATADIR%%/examples_graphics/fxgraphics.f
-%%DATADIR%%/examples_logging/Makefile
-%%DATADIR%%/examples_logging/comm1_isr.c
-%%DATADIR%%/examples_logging/comm1_isr_loop.c
-%%DATADIR%%/examples_logging/comm2_connect_accept.c
-%%DATADIR%%/examples_logging/comm2_spawn_child.c
-%%DATADIR%%/examples_logging/comm2_spawn_parent.c
-%%DATADIR%%/examples_logging/cpi.c
-%%DATADIR%%/examples_logging/cpilog.c
-%%DATADIR%%/examples_logging/cpilog_pack.c
-%%DATADIR%%/examples_logging/fcomm1_isr.f
-%%DATADIR%%/examples_logging/fpilog.f
-%%DATADIR%%/examples_logging/fpilog_pack.F
-%%DATADIR%%/examples_logging/iotest.c
-%%DATADIR%%/examples_logging/log_cost.c
-%%DATADIR%%/examples_logging/openmp_mpilog.F
-%%DATADIR%%/examples_logging/openmp_sendrecv.c
-%%DATADIR%%/examples_logging/pthread_allreduce.c
-%%DATADIR%%/examples_logging/pthread_sendrecv.c
-%%DATADIR%%/examples_logging/pthread_sendrecv_user.c
-%%DATADIR%%/examples_logging/srtest.c
-%%X11%%%%DATADIR%%/logfiles/barrier.rlog
-%%X11%%%%DATADIR%%/logfiles/fpilog.clog
-%%X11%%%%DATADIR%%/logfiles/fpilog.slog2
-%%JAVA%%@dirrm %%DATADIR%%/logfiles
-@dirrm %%DATADIR%%/examples_logging
-@dirrm %%DATADIR%%/examples_graphics
-@dirrm %%DATADIR%%/examples_collchk
+%%DATADIR%%/examples/collchk/Makefile
+%%DATADIR%%/examples/collchk/composite.c
+%%DATADIR%%/examples/collchk/scatterv.c
+%%DATADIR%%/examples/collchk/time_allreduce.c
+%%DATADIR%%/examples/collchk/time_alltoallv.c
+%%DATADIR%%/examples/collchk/time_alltoallv0.c
+%%DATADIR%%/examples/collchk/time_bcast.c
+%%DATADIR%%/examples/collchk/wrong_composite.c
+%%DATADIR%%/examples/collchk/wrong_int_byte.c
+%%DATADIR%%/examples/collchk/wrong_reals.f
+%%DATADIR%%/examples/collchk/wrong_root.c
+%%DATADIR%%/examples/collchk/wrong_scatterv.c
+%%DATADIR%%/examples/graphics/Makefile
+%%DATADIR%%/examples/graphics/cpi.c
+%%DATADIR%%/examples/graphics/cxgraphics.c
+%%DATADIR%%/examples/graphics/fxgraphics.f
+%%DATADIR%%/examples/logfiles/barrier.rlog
+%%DATADIR%%/examples/logfiles/fpilog.clog
+%%DATADIR%%/examples/logfiles/fpilog.slog2
+%%DATADIR%%/examples/logging/Makefile
+%%DATADIR%%/examples/logging/comm1_isr.c
+%%DATADIR%%/examples/logging/comm1_isr_loop.c
+%%DATADIR%%/examples/logging/comm2_connect_accept.c
+%%DATADIR%%/examples/logging/comm2_spawn_child.c
+%%DATADIR%%/examples/logging/comm2_spawn_parent.c
+%%DATADIR%%/examples/logging/cpi.c
+%%DATADIR%%/examples/logging/cpilog.c
+%%DATADIR%%/examples/logging/cpilog_pack.c
+%%DATADIR%%/examples/logging/fcomm1_isr.f
+%%DATADIR%%/examples/logging/fpilog.f
+%%DATADIR%%/examples/logging/fpilog_pack.F
+%%DATADIR%%/examples/logging/iotest.c
+%%DATADIR%%/examples/logging/log_cost.c
+%%DATADIR%%/examples/logging/openmp_mpilog.F
+%%DATADIR%%/examples/logging/openmp_sendrecv.c
+%%DATADIR%%/examples/logging/pthread_allreduce.c
+%%DATADIR%%/examples/logging/pthread_sendrecv.c
+%%DATADIR%%/examples/logging/pthread_sendrecv_user.c
+%%DATADIR%%/examples/logging/srtest.c
+@dirrm %%DATADIR%%/examples/logfiles
+@dirrm %%DATADIR%%/examples/logging
+@dirrm %%DATADIR%%/examples/graphics
+@dirrm %%DATADIR%%/examples/collchk
+@dirrm %%DATADIR%%/examples
@dirrm %%DATADIR%%
%%PORTDOCS%%@dirrm %%DOCSDIR%%/www4
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/www3
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/www1
%%JAVA%%%%PORTDOCS%%@dirrm %%DOCSDIR%%/jumpshot-4/html
%%JAVA%%%%PORTDOCS%%@dirrm %%DOCSDIR%%/jumpshot-4
%%PORTDOCS%%@dirrm %%DOCSDIR%%
diff --git a/science/fvm/Makefile b/science/fvm/Makefile
index f9eca8070a82..08a88cabd204 100644
--- a/science/fvm/Makefile
+++ b/science/fvm/Makefile
@@ -3,7 +3,7 @@
PORTNAME= fvm
PORTVERSION= 0.15.3
-PORTREVISION= 10
+PORTREVISION= 11
CATEGORIES= science parallel
MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/
DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g}
@@ -41,6 +41,8 @@ CONFIGURE_ARGS+= --with-mpi=${LOCALBASE}/mpi/openmpi
BUILD_DEPENDS+= ${LOCALBASE}/bin/mpicc:${PORTSDIR}/net/mpich2
RUN_DEPENDS+= ${LOCALBASE}/bin/mpirun:${PORTSDIR}/net/mpich2
CONFIGURE_ARGS+= --with-mpi=${LOCALBASE}
+# Do not directly depend on Fortran, but FFLAGS needed to link with mpich2
+USES+= fortran
.endif
.if defined(WITH_DEBUG)
diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile
index 89c2e7251cf0..40a1ca95fd23 100644
--- a/science/gromacs/Makefile
+++ b/science/gromacs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gromacs
PORTVERSION= 5.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/
diff --git a/science/ncs/Makefile b/science/ncs/Makefile
index 806cd4c5a09c..ac654a397567 100644
--- a/science/ncs/Makefile
+++ b/science/ncs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ncs
PORTVERSION= 2.0.4
-PORTREVISION= 9
+PORTREVISION= 10
CATEGORIES= science parallel
MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/
DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g}
diff --git a/science/pnetcdf/Makefile b/science/pnetcdf/Makefile
index b57104a4885c..e45c7ce137f6 100644
--- a/science/pnetcdf/Makefile
+++ b/science/pnetcdf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pnetcdf
PORTVERSION= 1.5.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science parallel
MASTER_SITES= http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/ \
LOCAL/sunpoet
generated by cgit (git 2.34.1) at 2024-12-17 08:41:16 +0800