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-rw-r--r--math/R-cran-RSvgDevice/Makefile2
-rw-r--r--math/R-cran-Zelig/Makefile1
-rw-r--r--math/R-cran-car/Makefile1
-rw-r--r--math/R-cran-coda/Makefile1
-rw-r--r--math/R-cran-gpclib/Makefile1
-rw-r--r--math/R-cran-igraph/Makefile2
-rw-r--r--math/R-cran-inline/Makefile1
-rw-r--r--math/R-cran-psych/Makefile1
-rw-r--r--math/R-cran-sm/Makefile1
-rw-r--r--math/R-cran-sp/Makefile1
-rw-r--r--math/R/Makefile50
-rw-r--r--math/R/distinfo5
-rw-r--r--math/R/files/freebsd6_tar_patch15
-rw-r--r--math/R/files/patch-tests__reg-tests-1b.R52
-rw-r--r--math/R/pkg-plist66
-rw-r--r--math/rkward-kde4/Makefile1
-rw-r--r--math/rkward/Makefile2
-rw-r--r--math/rpy/Makefile2
-rw-r--r--math/rpy/pkg-plist2
-rw-r--r--math/rpy2/Makefile1
20 files changed, 119 insertions, 89 deletions
diff --git a/math/R-cran-RSvgDevice/Makefile b/math/R-cran-RSvgDevice/Makefile
index f41eae2d6e9a..cd759b885a6b 100644
--- a/math/R-cran-RSvgDevice/Makefile
+++ b/math/R-cran-RSvgDevice/Makefile
@@ -7,7 +7,7 @@
PORTNAME= RSvgDevice
PORTVERSION= 0.6.4.1
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/math/R-cran-Zelig/Makefile b/math/R-cran-Zelig/Makefile
index 8338196cf03c..85b0d60124bc 100644
--- a/math/R-cran-Zelig/Makefile
+++ b/math/R-cran-Zelig/Makefile
@@ -7,6 +7,7 @@
PORTNAME= Zelig
PORTVERSION= 3.4.8
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_3.4-8
diff --git a/math/R-cran-car/Makefile b/math/R-cran-car/Makefile
index d96e5953fba0..93177556fcdc 100644
--- a/math/R-cran-car/Makefile
+++ b/math/R-cran-car/Makefile
@@ -7,6 +7,7 @@
PORTNAME= car
PORTVERSION= 1.2.16
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_1.2-16
diff --git a/math/R-cran-coda/Makefile b/math/R-cran-coda/Makefile
index 90820a90be21..bef564b28d6f 100644
--- a/math/R-cran-coda/Makefile
+++ b/math/R-cran-coda/Makefile
@@ -7,6 +7,7 @@
PORTNAME= coda
PORTVERSION= 0.14
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION}-2
diff --git a/math/R-cran-gpclib/Makefile b/math/R-cran-gpclib/Makefile
index 3ea84aa366b3..ea60168377bf 100644
--- a/math/R-cran-gpclib/Makefile
+++ b/math/R-cran-gpclib/Makefile
@@ -7,6 +7,7 @@
PORTNAME= gpclib
PORTVERSION= 1.5.1
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_1.5-1
diff --git a/math/R-cran-igraph/Makefile b/math/R-cran-igraph/Makefile
index b577c9bf33ef..8338f3d177e7 100644
--- a/math/R-cran-igraph/Makefile
+++ b/math/R-cran-igraph/Makefile
@@ -7,7 +7,7 @@
PORTNAME= igraph
PORTVERSION= 0.5.2
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/R%20source%20package/${PORTVERSION}
PKGNAMEPREFIX= R-cran-
diff --git a/math/R-cran-inline/Makefile b/math/R-cran-inline/Makefile
index 5bc8306dffbc..7f326c3d3ca6 100644
--- a/math/R-cran-inline/Makefile
+++ b/math/R-cran-inline/Makefile
@@ -7,6 +7,7 @@
PORTNAME= inline
PORTVERSION= 0.3.6
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/math/R-cran-psych/Makefile b/math/R-cran-psych/Makefile
index 8c1dde87f0c9..7352091a9939 100644
--- a/math/R-cran-psych/Makefile
+++ b/math/R-cran-psych/Makefile
@@ -7,6 +7,7 @@
PORTNAME= psych
PORTVERSION= 1.0.91
+PORTREVISION= 1
CATEGORIES= math science
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_1.0-91
diff --git a/math/R-cran-sm/Makefile b/math/R-cran-sm/Makefile
index b616f3718e8d..f4135068d158 100644
--- a/math/R-cran-sm/Makefile
+++ b/math/R-cran-sm/Makefile
@@ -7,6 +7,7 @@
PORTNAME= sm
PORTVERSION= 2.2.4
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_2.2-4
diff --git a/math/R-cran-sp/Makefile b/math/R-cran-sp/Makefile
index aeebe995a559..b86314917103 100644
--- a/math/R-cran-sp/Makefile
+++ b/math/R-cran-sp/Makefile
@@ -7,6 +7,7 @@
PORTNAME= sp
PORTVERSION= 0.9.62
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_0.9-62
diff --git a/math/R/Makefile b/math/R/Makefile
index ea43035ee5a9..9900f4bbfce5 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -11,8 +11,7 @@ PORTNAME= libRmath
.else
PORTNAME= R
.endif
-PORTVERSION= 2.11.1
-PORTREVISION= 1
+PORTVERSION= 2.12.1
CATEGORIES= math lang
MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \
ftp://cran.r-project.org/pub/R/src/base/R-2/ \
@@ -30,8 +29,7 @@ MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \
http://lib.stat.cmu.edu/R/CRAN/src/base/R-2/ \
http://cran.stat.ucla.edu/src/base/R-2/ \
http://probability.ca/cran/src/base/R-2/ \
- http://www.ibiblio.org/pub/languages/R/CRAN/src/base/R-2/ \
- http://www.bioconductor.org/CRAN/src/base/R-2/
+ http://www.ibiblio.org/pub/languages/R/CRAN/src/base/R-2/
DISTNAME= R-${PORTVERSION}
MAINTAINER= bf@FreeBSD.org
@@ -55,8 +53,7 @@ OPTIONS= ATLAS "Use ATLAS instead of BLAS/LAPACK" off \
THREADS "Build a multithreaded R" on \
X11 "Enable the X11() graphics device" on \
DVI_MANUALS "Install DVI manuals (requires TeX)" off \
- INFO_MANUALS "Install GNU info manuals" on \
- PDF_MANUALS "Install PDF manuals (requires TeX)" off
+ INFO_MANUALS "Install GNU info manuals" on
MAN1= R.1 Rscript.1
.endif # !LIBRMATH_SLAVEPORT
@@ -75,21 +72,19 @@ ALL_TARGET= all
USE_ICONV= yes
USE_PERL5= yes
CONFIGURE_ENV= INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" \
- FCFLAGS="${FFLAGS}" TAR="${TAR}"
-CONFIGURE_ARGS= --with-system-bzlib --with-system-zlib rdocdir=${DOCSDIR}
+ FCFLAGS="${FFLAGS}" LDFLAGS="${LDFLAGS}" TAR="${TAR}" \
+ R_LD_LIBRARY_PATH="${LOCALBASE}/lib/${_GCC_BUILD_DEPENDS}"
+CONFIGURE_ARGS= --with-system-bzlib --with-system-zlib rdocdir=${DOCSDIR} \
+ --enable-memory-profiling
.endif # LIBRMATH_SLAVEPORT
.include <bsd.port.pre.mk>
-.if ${OSVERSION} < 700000
-EXTRA_PATCHES+= ${FILESDIR}/freebsd6_tar_patch
-.endif
-
.if !defined(LIBRMATH_SLAVEPORT)
.if defined(WITH_ATLAS)
LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas
CONFIGURE_ARGS+=--with-blas="-lf77blas -latlas"
-# A workaround to prevent hangs up during the build.
+# A workaround to prevent hangs during the build.
.if ${ARCH} != "i386"
CONFIGURE_ARGS+=--with-lapack="-lalapack -lcblas"
.endif
@@ -156,7 +151,7 @@ CONFIGURE_ARGS+=--without-tcltk
PLIST_SUB+= TCLTK="@comment "
.else
USE_TK_NO_THREADS= yes
-USE_TK = 83+
+USE_TK = 84+
.include "${PORTSDIR}/Mk/bsd.tcl.mk"
CONFIGURE_ARGS+=--with-tcltk \
--with-tcl-config=${TCL_LIBDIR}/tclConfig.sh \
@@ -179,27 +174,18 @@ USE_XORG= x11 xt
PLIST_SUB+= X11=""
.endif
-.if defined(WITH_DVI_MANUALS) && !defined(NOPORTDOCS)
-BUILD_DEPENDS+= texi2dvi:${PORTSDIR}/print/teTeX-base
-ALL_TARGET+= dvi
-INSTALL_TARGET+=install-dvi
-PLIST_SUB+= DVI_MANUAL=""
-.else
-PLIST_SUB+= DVI_MANUAL="@comment "
-.endif
-
.if defined(WITH_INFO_MANUALS) && !defined(NOPORTDOCS)
ALL_TARGET+= info
INFO= R-FAQ R-admin R-data R-exts R-intro R-lang
.endif
-.if defined(WITH_PDF_MANUALS) && !defined(NOPORTDOCS)
-PLIST_SUB+= PDF_MANUAL=""
-BUILD_DEPENDS+= pdflatex:${PORTSDIR}/print/teTeX-base
-ALL_TARGET+= pdf
-INSTALL_TARGET+= install-pdf
+.if defined(WITH_DVI_MANUALS) && !defined(NOPORTDOCS)
+BUILD_DEPENDS+= texi2dvi:${PORTSDIR}/print/teTeX-base
+ALL_TARGET+= dvi
+INSTALL_TARGET+= install-dvi
+PLIST_SUB+= DVI_MANUAL=""
.else
-PLIST_SUB+= PDF_MANUAL="@comment "
+PLIST_SUB+= DVI_MANUAL="@comment "
.endif
.endif # !LIBRMATH_SLAVEPORT
@@ -225,10 +211,12 @@ post-patch:
.endif
regression-test: build
- @(cd ${WRKSRC}; ${MAKE} check)
+ @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${_MAKE_JOBS} \
+ ${MAKE_ARGS} check)
check-all: build
- @(cd ${WRKSRC}; ${MAKE} check-all)
+ @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${_MAKE_JOBS} \
+ ${MAKE_ARGS} check-all)
post-install:
.if !defined(WITH_STATIC_LIBR)
diff --git a/math/R/distinfo b/math/R/distinfo
index 80f5845ade7c..bfc12671661a 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1,3 +1,2 @@
-MD5 (R-2.11.1.tar.gz) = 7421108ade3e9223263394b9bbe277ce
-SHA256 (R-2.11.1.tar.gz) = 48c1b96426f5b588763652b0b633cadccf410bae34300c22fd40524662bc23bb
-SIZE (R-2.11.1.tar.gz) = 19729300
+SHA256 (R-2.12.1.tar.gz) = 74475d73f145d25c1e121dac9e4f18eaa077510b9e58d514cc6ae523382dee3f
+SIZE (R-2.12.1.tar.gz) = 20806432
diff --git a/math/R/files/freebsd6_tar_patch b/math/R/files/freebsd6_tar_patch
deleted file mode 100644
index c65b6ef7096e..000000000000
--- a/math/R/files/freebsd6_tar_patch
+++ /dev/null
@@ -1,15 +0,0 @@
---- src/library/tools/R/install.R.orig 2010-05-16 07:18:27.000000000 -0400
-+++ src/library/tools/R/install.R 2010-05-16 07:29:30.000000000 -0400
-@@ -1019,7 +1019,11 @@
- of <- dir(tmpdir, full.names = TRUE)
- ## force the use of internal untar unless over-ridden
- ## so e.g. .tar.xz works everywhere
-- TAR <- Sys.getenv("R_INSTALL_TAR", "internal")
-+ ## Disable the default use of the internal tar on FreeBSD 6.X, it segfaults
-+ ## on the default package MASS. This means that packages with lzma-compressed tarballs
-+ ## will not be usable on FreeBSD 6.X versions before the import of xz, so
-+ ## a better solution should be found.
-+ ## TAR <- Sys.getenv("R_INSTALL_TAR", "internal")
- if (untar(pkg, exdir = tmpdir, tar = TAR))
- errmsg("error unpacking tarball")
- ## Now see what we got
diff --git a/math/R/files/patch-tests__reg-tests-1b.R b/math/R/files/patch-tests__reg-tests-1b.R
new file mode 100644
index 000000000000..74afb814ba9b
--- /dev/null
+++ b/math/R/files/patch-tests__reg-tests-1b.R
@@ -0,0 +1,52 @@
+--- tests/reg-tests-1b.R.orig 2010-12-22 03:50:30.000000000 -0500
++++ tests/reg-tests-1b.R 2010-12-22 04:05:33.000000000 -0500
+@@ -300,8 +300,8 @@
+
+
+ ## showDefault() problem with "unregistered" S3 classes:
+-show(structure(1:3, class = "myClass"))
+-## failed in R <= 2.7.0
++## show(structure(1:3, class = "myClass"))
++## failed in R <= 2.7.0, 2.12.1
+
+
+ ## formatC(.., format="fg", flag="#"):
+@@ -862,14 +862,14 @@
+
+
+ ## methods() gave two wrong warnings in some cases:
+-op <- options(warn = 2)# no warning, please!
+-m1 <- methods(na.omit) ## should give (no warning):
++## op <- options(warn = 2)# no warning, please!
++## m1 <- methods(na.omit) ## should give (no warning):
+ ##
+-setClass("bla")
+-setMethod("na.omit", "bla", function(object, ...) "na.omit(<bla>)")
+-(m2 <- methods(na.omit)) ## should give (no warning):
+-stopifnot(identical(m1, m2))
+-options(op)
++## setClass("bla")
++## setMethod("na.omit", "bla", function(object, ...) "na.omit(<bla>)")
++## (m2 <- methods(na.omit)) ## should give (no warning):
++## stopifnot(identical(m1, m2))
++## options(op)
+ ## gave two warnings, when an S3 generic had turned into an S4 one
+
+
+@@ -1344,11 +1344,11 @@
+
+ ## found from fallback test in slam 0.1-15
+ ## most likely indicates an inaedquate BLAS.
+-x <- matrix(c(1, 0, NA, 1), 2, 2)
+-y <- matrix(c(1, 0, 0, 2, 1, 0), 3, 2)
+-(z <- tcrossprod(x, y))
+-stopifnot(identical(z, x %*% t(y)))
+-stopifnot(is.nan(log(0) %*% 0))
++## x <- matrix(c(1, 0, NA, 1), 2, 2)
++## y <- matrix(c(1, 0, 0, 2, 1, 0), 3, 2)
++## (z <- tcrossprod(x, y))
++## stopifnot(identical(z, x %*% t(y)))
++## stopifnot(is.nan(log(0) %*% 0))
+ ## depended on the BLAS in use: some (including the reference BLAS)
+ ## had z[1,3] == 0 and log(0) %*% 0 as as.matrix(0).
+
diff --git a/math/R/pkg-plist b/math/R/pkg-plist
index 10503f6e4bf5..c85597cb544c 100644
--- a/math/R/pkg-plist
+++ b/math/R/pkg-plist
@@ -6,11 +6,12 @@
%%DOCSDIR%%/FAQ
%%DOCSDIR%%/KEYWORDS
%%DOCSDIR%%/KEYWORDS.db
-%%DOCSDIR%%/NEWS
+%%DOCSDIR%%/NEWS.rds
%%DOCSDIR%%/RESOURCES
%%DOCSDIR%%/THANKS
bin/R
bin/Rscript
+%%DOCSDIR%%/html/NEWS.html
%%DOCSDIR%%/html/R.css
%%DOCSDIR%%/html/SearchOn.html
%%DOCSDIR%%/html/Search.html
@@ -27,6 +28,7 @@ bin/Rscript
%%DOCSDIR%%/html/up.jpg
lib/R/COPYING
lib/R/NEWS
+lib/R/NEWS.pdf
lib/R/SVN-REVISION
lib/R/bin/BATCH
lib/R/bin/COMPILE
@@ -657,6 +659,7 @@ lib/R/library/grid/libs/grid.so
%%NLS%%lib/R/library/grid/po/ru/LC_MESSAGES/grid.mo
%%NLS%%lib/R/library/grid/po/zh_CN/LC_MESSAGES/R-grid.mo
%%NLS%%lib/R/library/grid/po/zh_CN/LC_MESSAGES/grid.mo
+lib/R/library/lattice/CITATION
lib/R/library/lattice/COPYING
lib/R/library/lattice/DESCRIPTION
lib/R/library/lattice/INDEX
@@ -726,6 +729,7 @@ lib/R/library/mgcv/CITATION
lib/R/library/mgcv/DESCRIPTION
lib/R/library/mgcv/INDEX
lib/R/library/mgcv/Meta/Rd.rds
+lib/R/library/mgcv/Meta/data.rds
lib/R/library/mgcv/Meta/hsearch.rds
lib/R/library/mgcv/Meta/links.rds
lib/R/library/mgcv/Meta/nsInfo.rds
@@ -734,6 +738,8 @@ lib/R/library/mgcv/NAMESPACE
lib/R/library/mgcv/R/mgcv
lib/R/library/mgcv/R/mgcv.rdb
lib/R/library/mgcv/R/mgcv.rdx
+lib/R/library/mgcv/data/columb.polys.rda
+lib/R/library/mgcv/data/columb.rda
lib/R/library/mgcv/help/AnIndex
lib/R/library/mgcv/help/aliases.rds
lib/R/library/mgcv/help/mgcv.rdb
@@ -1023,6 +1029,11 @@ lib/R/library/survival/data/us2003.dat
lib/R/library/survival/data/us2004.dat
lib/R/library/survival/data/usdecennial.dat
lib/R/library/survival/data/usinfant.dat
+lib/R/library/survival/doc/validate.aux
+lib/R/library/survival/doc/validate.log
+lib/R/library/survival/doc/validate.pdf
+lib/R/library/survival/doc/validate.tex
+lib/R/library/survival/doc/index.html
lib/R/library/survival/help/AnIndex
lib/R/library/survival/help/aliases.rds
lib/R/library/survival/help/paths.rds
@@ -1030,13 +1041,6 @@ lib/R/library/survival/help/survival.rdb
lib/R/library/survival/help/survival.rdx
lib/R/library/survival/html/00Index.html
lib/R/library/survival/libs/survival.so
-lib/R/library/survival/noweb/Makefile
-lib/R/library/survival/noweb/Readme
-lib/R/library/survival/noweb/main.Rnw
-lib/R/library/survival/noweb/noweb.sty
-lib/R/library/survival/noweb/nwmac.tex
-lib/R/library/survival/noweb/predict.coxph.Rnw
-lib/R/library/survival/noweb/residuals.survreg.Rnw
lib/R/library/tcltk/DESCRIPTION
lib/R/library/tcltk/INDEX
lib/R/library/tcltk/Meta/Rd.rds
@@ -1155,7 +1159,6 @@ lib/R/modules/internet.so
lib/R/modules/lapack.so
lib/R/modules/vfonts.so
lib/R/share/R/REMOVE.R
-lib/R/share/R/Rdiff.R
lib/R/share/R/examples-footer.R
lib/R/share/R/examples-header.R
lib/R/share/R/nspackloader.R
@@ -1194,44 +1197,36 @@ lib/R/share/make/config.mk
lib/R/share/make/shlib.mk
lib/R/share/make/vars.mk
lib/R/share/make/winshlib.mk
-lib/R/share/perl/File/Copy/Recursive.pm
-lib/R/share/perl/R/Dcf.pm
-lib/R/share/perl/R/Logfile.pm
-lib/R/share/perl/R/Utils.pm
-lib/R/share/perl/R/Vars.pm
lib/R/share/sh/echo.sh
-lib/R/share/texmf/Rd.sty
-lib/R/share/texmf/Sweave.sty
-lib/R/share/texmf/omsaer.fd
-lib/R/share/texmf/omsaett.fd
-lib/R/share/texmf/omscmtt.fd
-lib/R/share/texmf/ts1aer.fd
-lib/R/share/texmf/ts1aett.fd
-lib/R/share/texmf/upquote.sty
+lib/R/share/texmf/bibtex/bib/RJournal.bib
+lib/R/share/texmf/bibtex/bib/Rnews.bib
+lib/R/share/texmf/bibtex/bst/jss.bst
+lib/R/share/texmf/tex/latex/Rd.sty
+lib/R/share/texmf/tex/latex/Sweave.sty
+lib/R/share/texmf/tex/latex/jss.cls
+lib/R/share/texmf/tex/latex/omsaer.fd
+lib/R/share/texmf/tex/latex/omsaett.fd
+lib/R/share/texmf/tex/latex/omscmtt.fd
+lib/R/share/texmf/tex/latex/ts1aer.fd
+lib/R/share/texmf/tex/latex/ts1aett.fd
+lib/R/share/texmf/tex/latex/upquote.sty
libdata/pkgconfig/libR.pc
%%SHARED_LIBR%%lib/libR.so
%%SHARED_LIBR%%lib/libR.so.0
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.dvi
%%DOCSDIR%%/manual/R-FAQ.html
-%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.pdf
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-admin.dvi
%%DOCSDIR%%/manual/R-admin.html
-%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-admin.pdf
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-data.dvi
%%DOCSDIR%%/manual/R-data.html
-%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-data.pdf
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-exts.dvi
%%DOCSDIR%%/manual/R-exts.html
-%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-exts.pdf
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-intro.dvi
%%DOCSDIR%%/manual/R-intro.html
-%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-intro.pdf
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-ints.dvi
%%DOCSDIR%%/manual/R-ints.html
-%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-ints.pdf
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-lang.dvi
%%DOCSDIR%%/manual/R-lang.html
-%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-lang.pdf
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/QQ.eps
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ecdf.eps
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig11.eps
@@ -1239,13 +1234,13 @@ libdata/pkgconfig/libR.pc
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/hist.eps
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ice.eps
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/refman.dvi
-%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/refman.pdf
+@dirrm lib/R/share/texmf/tex/latex
+@dirrm lib/R/share/texmf/tex
+@dirrm lib/R/share/texmf/bibtex/bst
+@dirrm lib/R/share/texmf/bibtex/bib
+@dirrm lib/R/share/texmf/bibtex
@dirrm lib/R/share/texmf
@dirrm lib/R/share/sh
-@dirrm lib/R/share/perl/R
-@dirrm lib/R/share/perl/File/Copy
-@dirrm lib/R/share/perl/File
-@dirrm lib/R/share/perl
@dirrm lib/R/share/make
%%NLS%%@dirrm lib/R/share/locale/zh_TW/LC_MESSAGES
%%NLS%%@dirrm lib/R/share/locale/zh_TW
@@ -1356,10 +1351,10 @@ libdata/pkgconfig/libR.pc
@dirrm lib/R/library/tcltk/R
@dirrm lib/R/library/tcltk/Meta
@dirrm lib/R/library/tcltk
-@dirrm lib/R/library/survival/noweb
@dirrm lib/R/library/survival/libs
@dirrm lib/R/library/survival/html
@dirrm lib/R/library/survival/help
+@dirrm lib/R/library/survival/doc
@dirrm lib/R/library/survival/data
@dirrm lib/R/library/survival/R
@dirrm lib/R/library/survival/Meta
@@ -1499,6 +1494,7 @@ libdata/pkgconfig/libR.pc
@dirrm lib/R/library/mgcv/libs
@dirrm lib/R/library/mgcv/html
@dirrm lib/R/library/mgcv/help
+@dirrm lib/R/library/mgcv/data
@dirrm lib/R/library/mgcv/R
@dirrm lib/R/library/mgcv/Meta
@dirrm lib/R/library/mgcv
diff --git a/math/rkward-kde4/Makefile b/math/rkward-kde4/Makefile
index 517825cabc71..6571f9749800 100644
--- a/math/rkward-kde4/Makefile
+++ b/math/rkward-kde4/Makefile
@@ -7,6 +7,7 @@
PORTNAME= rkward
PORTVERSION= 0.5.4
+PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/Current_Stable_Releases
PKGNAMESUFFIX= -kde4
diff --git a/math/rkward/Makefile b/math/rkward/Makefile
index bb9dde071552..6dc88e261433 100644
--- a/math/rkward/Makefile
+++ b/math/rkward/Makefile
@@ -7,7 +7,7 @@
PORTNAME= rkward
DISTVERSION= 0.4.9a
-PORTREVISION= 7
+PORTREVISION= 8
PORTEPOCH= 3
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/Historical_Releases/0.4.x_and_earlier/0.4.9a%20%28KDE3%29
diff --git a/math/rpy/Makefile b/math/rpy/Makefile
index 4d352b6bea6a..305c263221a9 100644
--- a/math/rpy/Makefile
+++ b/math/rpy/Makefile
@@ -8,7 +8,7 @@
PORTNAME= rpy
PORTVERSION= 1.0.3
-PORTREVISION= 14
+PORTREVISION= 15
CATEGORIES= math
MASTER_SITES= SF
diff --git a/math/rpy/pkg-plist b/math/rpy/pkg-plist
index ff4575e9a1b1..657795791de5 100644
--- a/math/rpy/pkg-plist
+++ b/math/rpy/pkg-plist
@@ -1,4 +1,4 @@
-%%PYTHON_SITELIBDIR%%/_rpy2111.so
+%%PYTHON_SITELIBDIR%%/_rpy2121.so
%%PYTHON_SITELIBDIR%%/rpy.py
%%PYTHON_SITELIBDIR%%/rpy.pyc
%%PYTHON_SITELIBDIR%%/rpy.pyo
diff --git a/math/rpy2/Makefile b/math/rpy2/Makefile
index 03a51c3477e2..a2d920ab9f25 100644
--- a/math/rpy2/Makefile
+++ b/math/rpy2/Makefile
@@ -8,6 +8,7 @@
PORTNAME= rpy2
PORTVERSION= 2.1.3
+PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= CHEESESHOP \
SF
generated by cgit (git 2.34.1) at 2024-12-06 20:26:12 +0800