diff options
| -rw-r--r-- | biology/phyml/Makefile | 40 | ||||
| -rw-r--r-- | biology/phyml/distinfo | 6 | ||||
| -rw-r--r-- | biology/phyml/files/patch-src-configure | 11 | ||||
| -rw-r--r-- | biology/phyml/files/patch-src-configure.ac | 11 |
4 files changed, 25 insertions, 43 deletions
diff --git a/biology/phyml/Makefile b/biology/phyml/Makefile index 1b10af986ab1..7114588ea85d 100644 --- a/biology/phyml/Makefile +++ b/biology/phyml/Makefile @@ -1,31 +1,33 @@ -# New ports collection makefile for: phyml 3.0 20090706 -# Date created: July 17, 2009 -# Whom: ballen -# +# Created by: ballen # $FreeBSD$ -# PORTNAME= phyml -PORTVERSION= 20090706 +PORTVERSION= 20121109 CATEGORIES= biology MASTER_SITES= GOOGLE_CODE -DISTNAME= phyml_20090706 +DISTNAME= ${PORTNAME}-20120412 +DIST_SUBDIR= ${PORTNAME} + +PATCH_SITES= ${MASTER_SITES} +PATCHFILES= ${PORTVERSION}.patch +PATCH_DIST_STRIP= -p4 MAINTAINER= ports@FreeBSD.org -COMMENT= A simple, fast, and accurate algorithm to estimate large phylogenies +COMMENT= Simple, fast, and accurate algorithm to estimate large phylogenies -WRKSRC= ${WRKDIR}/${PORTNAME}/src -GNU_CONFIGURE= yes -PLIST_FILES= bin/phyml -USE_AUTOTOOLS= automake aclocal -AUTOMAKE_ARGS= --add-missing +LICENSE= GPLv2 -.include <bsd.port.pre.mk> +PATCH_WRKSRC= ${WRKSRC}/src -pre-configure: - ${RM} ${WRKSRC}/missing +USE_AUTOTOOLS= aclocal autoheader automake autoconf +AUTOMAKE_ARGS= --add-missing +MAKE_JOBS_SAFE= yes + +PLIST_FILES= bin/phyml -pre-install: - ${CHMOD} a+x ${WRKSRC}/install-sh +post-patch: + @${REINPLACE_CMD} -e \ + '/^AC_INIT/s|,esyscmd.*,|,[${PORTVERSION}],| ; \ + s|-O2 -msse|$${CFLAGS}|' ${WRKSRC}/configure.ac -.include <bsd.port.post.mk> +.include <bsd.port.mk> diff --git a/biology/phyml/distinfo b/biology/phyml/distinfo index f0cee8c7e8a3..c588175155a7 100644 --- a/biology/phyml/distinfo +++ b/biology/phyml/distinfo @@ -1,2 +1,4 @@ -SHA256 (phyml_20090706.tar.gz) = b39fa8ba2bc3a6566f3463c77db0d8992f71a71af353be539d0916173785d4bd -SIZE (phyml_20090706.tar.gz) = 818229 +SHA256 (phyml/phyml-20120412.tar.gz) = a43e51534a1ae2d1ee4c94ced3a1855813ff4872a6c9c2b83b369ddb71198417 +SIZE (phyml/phyml-20120412.tar.gz) = 4089133 +SHA256 (phyml/20121109.patch) = 3aa8bebd0ff78a553795ddda512ef1c7542d1e3c90c1da61c7125c304f6caa2c +SIZE (phyml/20121109.patch) = 11016 diff --git a/biology/phyml/files/patch-src-configure b/biology/phyml/files/patch-src-configure deleted file mode 100644 index dbd05af4a45a..000000000000 --- a/biology/phyml/files/patch-src-configure +++ /dev/null @@ -1,11 +0,0 @@ ---- configure.orig 2009-07-20 16:01:12.000000000 -0400 -+++ configure 2009-07-20 16:02:03.000000000 -0400 -@@ -5491,8 +5491,6 @@ - esac - # End of cross-compilation macros - --CFLAGS+=" -O3 -fomit-frame-pointer -funroll-loops -Wall" -- - ac_config_files="$ac_config_files Makefile" - - cat >confcache <<\_ACEOF diff --git a/biology/phyml/files/patch-src-configure.ac b/biology/phyml/files/patch-src-configure.ac deleted file mode 100644 index da1f2449db83..000000000000 --- a/biology/phyml/files/patch-src-configure.ac +++ /dev/null @@ -1,11 +0,0 @@ ---- configure.ac.orig 2009-07-17 14:57:39.000000000 -0600 -+++ configure.ac 2009-07-17 14:57:55.000000000 -0600 -@@ -58,8 +58,6 @@ - esac - # End of cross-compilation macros - --CFLAGS+=" -O3 -fomit-frame-pointer -funroll-loops -Wall" -- - AC_CONFIG_FILES([Makefile]) - AC_OUTPUT - |