diff options
| -rw-r--r-- | biology/tinker/Makefile | 2 | ||||
| -rw-r--r-- | biology/tinker/distinfo | 4 | ||||
| -rw-r--r-- | biology/tinker/files/patch-make__Makefile | 32 | ||||
| -rw-r--r-- | biology/tinker/pkg-plist | 4 |
4 files changed, 22 insertions, 20 deletions
diff --git a/biology/tinker/Makefile b/biology/tinker/Makefile index 7860f158fa51..91e799ac0f5c 100644 --- a/biology/tinker/Makefile +++ b/biology/tinker/Makefile @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= tinker -PORTVERSION= 7.1.2 +PORTVERSION= 7.1.3 CATEGORIES= biology MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/ diff --git a/biology/tinker/distinfo b/biology/tinker/distinfo index d7803898c34e..ecf2364c3b89 100644 --- a/biology/tinker/distinfo +++ b/biology/tinker/distinfo @@ -1,2 +1,2 @@ -SHA256 (tinker-7.1.2.tar.gz) = fdee18915cff9044fd083bb2271083c221db6d05de2cb98fc111b136e23e6899 -SIZE (tinker-7.1.2.tar.gz) = 28468683 +SHA256 (tinker-7.1.3.tar.gz) = c221459ac1ac423ed8c99c7ba67eaab09821c970333cd2841efb20ccbfd59095 +SIZE (tinker-7.1.3.tar.gz) = 28655947 diff --git a/biology/tinker/files/patch-make__Makefile b/biology/tinker/files/patch-make__Makefile index 464d9200cfa6..eb83d6a31f20 100644 --- a/biology/tinker/files/patch-make__Makefile +++ b/biology/tinker/files/patch-make__Makefile @@ -1,5 +1,5 @@ ---- make/Makefile.orig 2014-12-16 05:18:02.000000000 +0200 -+++ make/Makefile 2014-12-30 10:29:50.000000000 +0200 +--- make/Makefile.orig 2015-05-18 16:58:50.748044000 +0800 ++++ make/Makefile 2015-05-18 17:07:06.767545000 +0800 @@ -33,9 +33,9 @@ ## BINDIR Hard Copies of TINKER Executables ## LINKDIR Linked Copies of TINKER Executables @@ -13,7 +13,7 @@ #################################################################### ## Known Machine Types; Uncomment One of the Following Sections ## -@@ -46,26 +46,26 @@ LINKDIR = /usr/local/bin +@@ -46,26 +46,26 @@ ## CPU Type: Intel x86 Compatible ## Compiler: GNU gfortran @@ -27,8 +27,8 @@ +F77 = ${FC} +LIBS = +F77FLAGS = -c ${FFLAGS} -+OPTFLAGS = -+LIBFLAGS = -rcuv ++OPTFLAGS = ++LIBFLAGS = -crusv +RANLIB = ranlib +LINKFLAGS = ${LDFLAGS} @@ -54,7 +54,7 @@ ## Machine: Generic Linux ## CPU Type: Intel x86 Compatible (also AMD) -@@ -106,7 +106,7 @@ LINKFLAGS = $(OPTFLAGS) -static-libgcc +@@ -106,7 +106,7 @@ #LIBFLAGS = -crusv #RANLIB = ranlib -c #LINKFLAGS = $(OPTFLAGS) -static-intel -mmacosx-version-min=10.6 \ @@ -63,31 +63,29 @@ ## Machine: Macintosh ## CPU Type: Intel Xeon -@@ -710,93 +710,88 @@ EXEFILES = alchemy.x \ +@@ -710,92 +710,88 @@ xyzpdb.x \ xyzsybyl.x -%.o: %.f - ${F77} ${F77FLAGS} ${OPTFLAGS} $< -o $@ -- ++.SUFFIXES: .x + -%.o: %.c - ${CC} ${CFLAGS} ${INCLUDEDIR} ${OPTFLAGS} $< -+.SUFFIXES: .x ++.f.o: ++ ${F77} ${F77FLAGS} ${OPTFLAGS} $< -o $@ -%.x: %.o libtinker.a - ${F77} ${LINKFLAGS} -o $@ $^ ${LIBS}; strip $@ -+.f.o: -+ ${F77} ${F77FLAGS} ${OPTFLAGS} $< -o $@ - --all: -- ${EXEFILES} +.o.x: libtinker.a + ${F77} ${LINKFLAGS} -o $@ $< libtinker.a ${LIBS} + all: ${EXEFILES} + -install: - rename -+all: ${EXEFILES} - +- clean: rm -f *.o *.mod *.a *.x @@ -226,7 +224,7 @@ rm -f $(LINKDIR)/anneal rm -f $(LINKDIR)/archive rm -f $(LINKDIR)/bar -@@ -859,7 +854,7 @@ remove_links: +@@ -858,7 +854,7 @@ create_links: ln -s $(BINDIR)/alchemy $(LINKDIR)/alchemy diff --git a/biology/tinker/pkg-plist b/biology/tinker/pkg-plist index d70bd7a5ed22..20ff4473d5c9 100644 --- a/biology/tinker/pkg-plist +++ b/biology/tinker/pkg-plist @@ -77,6 +77,10 @@ bin/xyzsybyl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ammonia.xyz %%PORTEXAMPLES%%%%EXAMPLESDIR%%/amoeba.key %%PORTEXAMPLES%%%%EXAMPLESDIR%%/amoeba.xyz +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/anthracene.key +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/anthracene.xyz +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/aspirin.key +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/aspirin.xyz %%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.int %%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.key %%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.xyz |