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-rw-r--r--biology/mafft/Makefile8
-rw-r--r--biology/mafft/distinfo4
-rw-r--r--biology/mafft/pkg-plist3
3 files changed, 7 insertions, 8 deletions
diff --git a/biology/mafft/Makefile b/biology/mafft/Makefile
index 8b7e67684eac..6bd72075d8e8 100644
--- a/biology/mafft/Makefile
+++ b/biology/mafft/Makefile
@@ -1,8 +1,8 @@
-# Created by: Reed A. Cartwright <reed@cartwrig.ht>
+# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$
PORTNAME= mafft
-PORTVERSION= 7.149
+PORTVERSION= 7.221
CATEGORIES= biology
MASTER_SITES= http://mafft.cbrc.jp/alignment/software/
DISTNAME= ${PORTNAME}-${PORTVERSION}-without-extensions-src
@@ -19,14 +19,14 @@ BUILD_WRKSRC= ${WRKSRC}/core
USES= gmake shebangfix tar:tgz
-SHEBANG_FILES= core/mafftash_premafft.tmpl
+SHEBANG_FILES= core/mafftash_premafft.tmpl core/seekquencer_premafft.tmpl
LIBEXEC_FILES= dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign \
pair2hat3s multi2hat3s pairash addsingle splittbfast \
disttbfast tbfast mafft-profile f2cl mccaskillwrap contrafoldwrap \
countlen seq2regtable regtable2seq score getlag dndpre \
setcore replaceu restoreu setdirection makedirectionlist version
-PERL_LIBEXEC_FILES= mafftash_premafft.pl
+PERL_LIBEXEC_FILES= mafftash_premafft.pl seekquencer_premafft.pl
SCRIPT_FILES= mafft mafft-homologs.rb
LN_FILES= einsi fftns fftnsi ginsi linsi mafft-einsi mafft-fftns \
mafft-fftnsi mafft-ginsi mafft-linsi mafft-nwns mafft-nwnsi \
diff --git a/biology/mafft/distinfo b/biology/mafft/distinfo
index 6c04f2612fe6..199a7bc6e942 100644
--- a/biology/mafft/distinfo
+++ b/biology/mafft/distinfo
@@ -1,2 +1,2 @@
-SHA256 (mafft-7.149-without-extensions-src.tgz) = cfd909ee28afcc191f99c7ca37a507ddbefe9fbc416ef5692528c68a60c7b29a
-SIZE (mafft-7.149-without-extensions-src.tgz) = 373846
+SHA256 (mafft-7.221-without-extensions-src.tgz) = 6d9cdcc04684c8c8ff61888dffc0396b48c713e4519a99f54e04c4a7179d2776
+SIZE (mafft-7.221-without-extensions-src.tgz) = 376075
diff --git a/biology/mafft/pkg-plist b/biology/mafft/pkg-plist
index 3bb0b782df32..bc0982b4d887 100644
--- a/biology/mafft/pkg-plist
+++ b/biology/mafft/pkg-plist
@@ -41,6 +41,7 @@ libexec/mafft/regtable2seq
libexec/mafft/replaceu
libexec/mafft/restoreu
libexec/mafft/score
+libexec/mafft/seekquencer_premafft.pl
libexec/mafft/seq2regtable
libexec/mafft/setcore
libexec/mafft/setdirection
@@ -53,13 +54,11 @@ man/man1/mafft.1.gz
%%PORTDOCS%%%%DOCSDIR%%/license
%%PORTDOCS%%%%DOCSDIR%%/readme
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.allowshift
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.dpparttree
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.fftns2
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.fftnsi
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.gins1
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.ginsi
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.ginsi.allowshift
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.lins1
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.linsi
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.parttree