diff options
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/adun/Makefile | 44 | ||||
| -rw-r--r-- | biology/adun/distinfo | 3 | ||||
| -rw-r--r-- | biology/adun/files/patch-AdunLinkedList.m | 14 | ||||
| -rw-r--r-- | biology/adun/files/patch-AdunMemoryManager.h | 22 | ||||
| -rw-r--r-- | biology/adun/files/patch-AdunMemoryManager.m | 266 | ||||
| -rw-r--r-- | biology/adun/files/patch-GNUmakefile | 17 | ||||
| -rw-r--r-- | biology/adun/files/patch-main.m | 23 | ||||
| -rw-r--r-- | biology/adun/pkg-descr | 4 | ||||
| -rw-r--r-- | biology/adun/pkg-plist | 213 |
10 files changed, 607 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index f41a9a4fd496..c4cbbeb9b5c3 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -4,6 +4,7 @@ COMMENT = Biology SUBDIR += L-Breeder + SUBDIR += adun SUBDIR += ariadne SUBDIR += artemis SUBDIR += avida diff --git a/biology/adun/Makefile b/biology/adun/Makefile new file mode 100644 index 000000000000..20bc9d3a6a78 --- /dev/null +++ b/biology/adun/Makefile @@ -0,0 +1,44 @@ +# New ports collection makefile for: adun +# Date created: 4 Sep 2006 +# Whom: gurkan@linuks.mine.nu +# +# $FreeBSD$ +# + +PORTNAME= adun +PORTVERSION= 0.6 +CATEGORIES= biology +MASTER_SITES= http://download.gna.org/adun/ +DISTNAME= Adun${PORTVERSION} + +MAINTAINER= gurkan@linuks.mine.nu +COMMENT= Molecular Simulator for GNUstep + +LIB_DEPENDS+= gsl.9:${PORTSDIR}/math/gsl + +WRKSRC= ${WRKDIR}/Adun/ +USE_GMAKE= yes +USE_GNUSTEP= yes +USE_GNUSTEP_PREFIX= yes +USE_GNUSTEP_BACK= yes +USE_GNUSTEP_BUILD= yes +USE_GNUSTEP_INSTALL= yes +MAKEFILE= GNUmakefile +NO_FILTER_SHLIBS= yes + +post-patch: + ${CP} ${WRKSRC}/MolTalk/Defs/Linux_i686.def \ + ${WRKSRC}/MolTalk/Defs/i386.def + ${REINPLACE_CMD} -e 's|^GNUSTEP_INSTALLATION_DIR|#GNUSTEP_INSTALLATION_DIR|' \ + ${WRKSRC}/Tools/GNUmakefile \ + ${WRKSRC}/Tools/ResultsConverter/GNUmakefile \ + ${WRKSRC}/MolTalk/GNUmakefile.preamble \ + ${WRKSRC}/Kernel/GNUmakefile \ + ${WRKSRC}/Kernel/AdunKernel/GNUmakefile \ + ${WRKSRC}/UL/GNUmakefile \ + ${WRKSRC}/UL/AdunServer/GNUmakefile + ${REINPLACE_CMD} -e 's|HOME|${PREFIX}|' \ + ${WRKSRC}/Plugins/Analyse/GNUmakefile \ + ${WRKSRC}/Plugins/Results/GNUmakefile + +.include <bsd.port.mk> diff --git a/biology/adun/distinfo b/biology/adun/distinfo new file mode 100644 index 000000000000..8258acfa9228 --- /dev/null +++ b/biology/adun/distinfo @@ -0,0 +1,3 @@ +MD5 (Adun0.6.tar.gz) = 34e35b5314095cef93fc17d40a7701a5 +SHA256 (Adun0.6.tar.gz) = 94acf265be17b86368e2d8c62cd2872e90a8d953ac520756af3272d2593e1203 +SIZE (Adun0.6.tar.gz) = 781286 diff --git a/biology/adun/files/patch-AdunLinkedList.m b/biology/adun/files/patch-AdunLinkedList.m new file mode 100644 index 000000000000..165fbbf6fcb0 --- /dev/null +++ b/biology/adun/files/patch-AdunLinkedList.m @@ -0,0 +1,14 @@ +--- Kernel/AdunKernel/Framework/AdunLinkedList.m.orig Tue Jun 13 12:16:44 2006 ++++ Kernel/AdunKernel/Framework/AdunLinkedList.m Sun Nov 5 13:34:01 2006 +@@ -109,7 +109,11 @@ + NSDebugLLog(@"AdListMemoryManagement", @"Creating New Block - There are now %d blocks", block_no); + //On 64 bit machines we should align on a 64 bit boundary + ++#ifndef __FreeBSD__ + posix_memalign((void**)&listPointer, 32, BLOCKSIZE*sizeof(ListElement)); ++#else ++ listPointer = malloc(BLOCKSIZE*sizeof(ListElement)); ++#endif + blocks[block_no-1] = listPointer; + + return blocks[block_no-1]; diff --git a/biology/adun/files/patch-AdunMemoryManager.h b/biology/adun/files/patch-AdunMemoryManager.h new file mode 100644 index 000000000000..e88031346f82 --- /dev/null +++ b/biology/adun/files/patch-AdunMemoryManager.h @@ -0,0 +1,22 @@ +--- Kernel/AdunKernel/Headers/AdunKernel/AdunMemoryManager.h.orig Tue Jun 13 12:16:44 2006 ++++ Kernel/AdunKernel/Headers/AdunKernel/AdunMemoryManager.h Sun Nov 5 13:16:58 2006 +@@ -24,7 +24,9 @@ + #define _ADUNIOMANAGER_ + + #include <stdlib.h> ++#ifndef __FreeBSD__ + #include <malloc.h> ++#endif + #include "Base/InterTable.h" + #include "AdunKernel/AdunDefinitions.h" + #include "AdunKernel/AdunObject.h" +@@ -38,7 +40,9 @@ + + @interface AdMemoryManager: AdObject + { ++#ifndef __FreeBSD__ + struct mallinfo mem_struct; ++#endif + BOOL MEMORY_STATS; + } + diff --git a/biology/adun/files/patch-AdunMemoryManager.m b/biology/adun/files/patch-AdunMemoryManager.m new file mode 100644 index 000000000000..c1d7235482b7 --- /dev/null +++ b/biology/adun/files/patch-AdunMemoryManager.m @@ -0,0 +1,266 @@ +--- Kernel/AdunKernel/Framework/AdunMemoryManager.m.orig Tue Jun 13 12:16:44 2006 ++++ Kernel/AdunKernel/Framework/AdunMemoryManager.m Sun Nov 5 13:15:25 2006 +@@ -68,6 +68,7 @@ + NSError* error; + NSMutableDictionary* errorDict; + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -77,6 +78,7 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + + //The return value of malloc(0) is implementation dependant + //It can return NULL in which case it is indistinguisable from +@@ -133,6 +135,7 @@ + + memset(array, 0, size); + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -143,6 +146,7 @@ + mem_struct.fordblks); + fflush(stderr); + } ++#endif + + + return array; +@@ -154,6 +158,7 @@ + double *array; + AdMatrix *matrix; + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -163,6 +168,7 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + + matrix = (AdMatrix*)malloc(sizeof(AdMatrix)); + matrix->no_rows = no_rows; +@@ -172,6 +178,7 @@ + for(i=0, j=0; i < no_rows; i++, j = j + no_columns) + matrix->matrix[i] = array + j; + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -181,6 +188,7 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + + return matrix; + } +@@ -191,6 +199,7 @@ + int *array; + IntMatrix *matrix; + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -200,6 +209,7 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + + matrix = (IntMatrix*)malloc(sizeof(IntMatrix)); + matrix->no_rows = no_rows; +@@ -209,6 +219,7 @@ + for(i=0, j=0; i < no_rows; i++, j = j + no_columns) + matrix->matrix[i] = array + j; + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -220,6 +231,7 @@ + } + + return matrix; ++#endif + } + + - (InterTable*) allocateInterTableWithRows: (int) no_rows withColumns: (int) no_columns +@@ -228,6 +240,7 @@ + double *array; + InterTable *table; + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -237,6 +250,7 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + + table = (InterTable*)malloc(sizeof(InterTable)); + table->no_interactions = no_rows; +@@ -248,6 +262,7 @@ + for(i=0, j=0; i < no_rows; i++, j = j + no_columns) + table->table[i] = array + j; + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -257,12 +272,14 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + + return table; + } + + - (void) freeArray: (void*)array + { ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -272,9 +289,11 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + + free(array); + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -284,6 +303,7 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + } + + /** Do not use this method to free matrices not allocated by one of the +@@ -297,6 +317,7 @@ + free(matrix[0]); //frees the number array + free(matrix); //frees the index array + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -306,6 +327,7 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + + } + +@@ -313,6 +335,7 @@ + { + //matrices are allocated as arrays + //with another array of indexes ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -322,6 +345,7 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + + if(matrix->no_rows != 0) + { +@@ -330,6 +354,7 @@ + } + free(matrix); + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -339,10 +364,12 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + } + + - (void) freeIntMatrix: (IntMatrix*) matrix + { ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -352,6 +379,7 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + + if(matrix->no_rows != 0) + { +@@ -360,6 +388,7 @@ + } + free(matrix); + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -369,6 +398,7 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + } + + - (void) freeInterTable: (InterTable*) matrix +@@ -376,6 +406,7 @@ + //matrices are allocated as arrays + //with another array of indexes + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -385,6 +416,7 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + + if(matrix->no_interactions != 0) + { +@@ -394,6 +426,7 @@ + + free(matrix); + ++#ifndef __FreeBSD__ + if(MEMORY_STATS==YES) + { + mem_struct = mallinfo(); +@@ -403,6 +436,7 @@ + (float)mem_struct.uordblks/(float)MEM_CON, + mem_struct.fordblks); + } ++#endif + } + + @end diff --git a/biology/adun/files/patch-GNUmakefile b/biology/adun/files/patch-GNUmakefile new file mode 100644 index 000000000000..e9ab0c8dc869 --- /dev/null +++ b/biology/adun/files/patch-GNUmakefile @@ -0,0 +1,17 @@ +--- GNUmakefile.orig Tue Apr 4 18:23:24 2006 ++++ GNUmakefile Sun Nov 5 13:56:03 2006 +@@ -2,12 +2,12 @@ + include $(GNUSTEP_MAKEFILES)/common.make + + SUBPROJECTS = Kernel/ MolTalk/ UL/ +-GNUSTEP_INSTALLATION_DIR=$(HOME)/GNUstep ++#GNUSTEP_INSTALLATION_DIR=$(HOME)/GNUstep + + #Rpm + + PACKAGE_NAME=Adun +-PACKAGE_VERSION=0.5 ++PACKAGE_VERSION=0.6 + + -include GNUmakefile.preamble + diff --git a/biology/adun/files/patch-main.m b/biology/adun/files/patch-main.m new file mode 100644 index 000000000000..fff8726b3ebb --- /dev/null +++ b/biology/adun/files/patch-main.m @@ -0,0 +1,23 @@ +--- Kernel/main.m.orig Mon Aug 7 12:17:30 2006 ++++ Kernel/main.m Sun Nov 5 13:27:26 2006 +@@ -3,7 +3,9 @@ + #include <stdio.h> + #include <float.h> + #include <fenv.h> ++#ifndef __FreeBSD__ + #include <mcheck.h> ++#endif + #include "AdunKernel/AdunKernel.h" + + /** \mainpage +@@ -250,8 +252,10 @@ + + if([[NSUserDefaults standardUserDefaults] boolForKey: @"TraceMemory"] == YES) + { ++#ifndef __FreeBSD__ + mtrace(); + mcheck(NULL); ++#endif + } + + logFile = [[NSUserDefaults standardUserDefaults] stringForKey: @"LogFile"]; diff --git a/biology/adun/pkg-descr b/biology/adun/pkg-descr new file mode 100644 index 000000000000..d497e1a28ba6 --- /dev/null +++ b/biology/adun/pkg-descr @@ -0,0 +1,4 @@ +Adun is a new extendible molecular simulation program that also +includes data management and analysis capabilities. + +WWW: http://diana.imim.es/Adun diff --git a/biology/adun/pkg-plist b/biology/adun/pkg-plist new file mode 100644 index 000000000000..59e303a442a9 --- /dev/null +++ b/biology/adun/pkg-plist @@ -0,0 +1,213 @@ +Local/Applications/UL.app/Resources/EnzymixParameters.ffml +Local/Applications/UL.app/Resources/EnzymixTopology.ffml +Local/Applications/UL.app/Resources/H2O.pdb +Local/Applications/UL.app/Resources/Info-gnustep.plist +Local/Applications/UL.app/Resources/Options.gorm/data.classes +Local/Applications/UL.app/Resources/Options.gorm/data.info +Local/Applications/UL.app/Resources/Options.gorm/objects.gorm +Local/Applications/UL.app/Resources/Preferences.gorm/data.classes +Local/Applications/UL.app/Resources/Preferences.gorm/data.info +Local/Applications/UL.app/Resources/Preferences.gorm/objects.gorm +Local/Applications/UL.app/Resources/ProgressPanel.gorm/data.classes +Local/Applications/UL.app/Resources/ProgressPanel.gorm/data.info +Local/Applications/UL.app/Resources/ProgressPanel.gorm/objects.gorm +Local/Applications/UL.app/Resources/Results.gorm/data.classes +Local/Applications/UL.app/Resources/Results.gorm/data.info +Local/Applications/UL.app/Resources/Results.gorm/objects.gorm +Local/Applications/UL.app/Resources/System.gorm/data.classes +Local/Applications/UL.app/Resources/System.gorm/data.info +Local/Applications/UL.app/Resources/System.gorm/objects.gorm +Local/Applications/UL.app/Resources/Template.gorm/data.classes +Local/Applications/UL.app/Resources/Template.gorm/data.info +Local/Applications/UL.app/Resources/Template.gorm/objects.gorm +Local/Applications/UL.app/Resources/UL.desktop +Local/Applications/UL.app/Resources/UL.gorm/data.classes +Local/Applications/UL.app/Resources/UL.gorm/data.info +Local/Applications/UL.app/Resources/UL.gorm/objects.gorm +Local/Applications/UL.app/Resources/apply.png +Local/Applications/UL.app/Resources/defaultOptions.plist +Local/Applications/UL.app/Resources/document-save.png +Local/Applications/UL.app/Resources/pdbBuilderOptions.plist +Local/Applications/UL.app/Resources/pdbNameMap.plist +Local/Applications/UL.app/Resources/reload.png +Local/Applications/UL.app/Resources/resultsOptions.plist +Local/Applications/UL.app/Resources/splash.tiff +Local/Applications/UL.app/UL +Local/Applications/UL.app/library_paths.openapp +Local/Applications/UL.app/stamp.make +Local/Library/Frameworks/AdunKernel.framework/Headers +Local/Library/Frameworks/AdunKernel.framework/Resources +Local/Library/Frameworks/AdunKernel.framework/Versions/A/AdunKernel +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdCommandInterface.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdController.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdCoreCommand.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdCreation.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdDataSources.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdDelegation.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdEndSimulationCommand.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdFlushEnergiesCommand.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdFrameworkFunctions.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdGridDelegate.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdKeyValueObserving.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdListMemoryManagement.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdReloadCommand.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdServerInterface.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdStatusCommand.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdUpdating.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunBondedTopology.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunBoundaryImplementor.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunController.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunCore.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunDataMatrix.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunDataSet.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunDataSource.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunDefinitions.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunDynamics.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunEnvironment.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunForceField.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunForceFieldManager.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunForceFieldTerm.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunGrid.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunIOManager.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunInteractionSystem.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunKernel.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunLinkedList.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunMemoryManager.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunModelObject.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunNonBondedListHandler.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunNonBondedTopology.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunNonbondedCalculator.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunObject.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunRelationship.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunSimulator.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunState.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunSystem.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunSystemComponent.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunSystemNode.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/AdunTimer.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/CellListHandler.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/EnzymixForceField.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/GRFNonbondedCalculator.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/NewtonianSimulator.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/PureNonBondedCalculator.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/RemoteProcessAccess.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/SCAAS.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/ShiftedNonBondedCalculator.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/SimpleListHandler.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/SphericalBox.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Headers/ULIndexSetConversions.h +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Resources/Info-gnustep.plist +Local/Library/Frameworks/AdunKernel.framework/Versions/A/Resources/ScriptingInfo.plist +Local/Library/Frameworks/AdunKernel.framework/Versions/A/libAdunKernel.so +Local/Library/Frameworks/AdunKernel.framework/Versions/A/libAdunKernel.so.%%MAJORLIBVERSION%% +Local/Library/Frameworks/AdunKernel.framework/Versions/A/libAdunKernel.so.%%LIBVERSION%% +Local/Library/Frameworks/AdunKernel.framework/Versions/Current +Local/Library/Headers/AdunKernel +Local/Library/Headers/Base/AdForceFieldFunctions.h +Local/Library/Headers/Base/AdLinkedList.h +Local/Library/Headers/Base/AdMatrix.h +Local/Library/Headers/Base/AdQuaternion.h +Local/Library/Headers/Base/AdSorter.h +Local/Library/Headers/Base/AdVector.h +Local/Library/Headers/Base/InterTable.h +Local/Library/Headers/MolTalk/Atom.oh +Local/Library/Headers/MolTalk/Chain.oh +Local/Library/Headers/MolTalk/ChainFactory.oh +Local/Library/Headers/MolTalk/CompressedFileStream.oh +Local/Library/Headers/MolTalk/Coordinates.oh +Local/Library/Headers/MolTalk/FileStream.oh +Local/Library/Headers/MolTalk/Matrix.oh +Local/Library/Headers/MolTalk/Matrix44.oh +Local/Library/Headers/MolTalk/Matrix53.oh +Local/Library/Headers/MolTalk/MolTalk.oh +Local/Library/Headers/MolTalk/PairwiseStrxAlignment.oh +Local/Library/Headers/MolTalk/Residue.oh +Local/Library/Headers/MolTalk/ResidueFactory.oh +Local/Library/Headers/MolTalk/Selection.oh +Local/Library/Headers/MolTalk/Stream.oh 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