diff options
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/migrate/Makefile | 34 | ||||
| -rw-r--r-- | biology/migrate/distinfo | 1 | ||||
| -rw-r--r-- | biology/migrate/pkg-comment | 1 | ||||
| -rw-r--r-- | biology/migrate/pkg-descr | 14 | ||||
| -rw-r--r-- | biology/migrate/pkg-plist | 12 |
6 files changed, 63 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 5632f6133881..d5e3377fe257 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -16,6 +16,7 @@ SUBDIR += grappa SUBDIR += hmmer SUBDIR += kinemage + SUBDIR += migrate SUBDIR += molden SUBDIR += mopac SUBDIR += nab diff --git a/biology/migrate/Makefile b/biology/migrate/Makefile new file mode 100644 index 000000000000..730c5b452c72 --- /dev/null +++ b/biology/migrate/Makefile @@ -0,0 +1,34 @@ +# New ports collection makefile for: migrate +# Date created: 6 August 2001 +# Whom: Johann Visagie <wjv@FreeBSD.org> +# +# $FreeBSD$ +# + +PORTNAME= migrate +PORTVERSION= 1.2 +CATEGORIES= biology +MASTER_SITES= ftp://evolution.genetics.washington.edu/pub/lamarc/migrate/ +DISTNAME= ${PORTNAME}-${PORTVERSION}.src + +MAINTAINER= wjv@FreeBSD.org + +WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} +CONFIGURE_WRKSRC= ${WRKSRC}/src +BUILD_WRKSRC= ${CONFIGURE_WRKSRC} +INSTALL_WRKSRC= ${CONFIGURE_WRKSRC} +GNU_CONFIGURE= yes + +MAN1= migrate.1 + +post-install: + @ cd ${PREFIX}/bin && ${LN} -s migrate-n migrate +.if !defined(NOPORTDOCS) + @ ${MKDIR} ${DOCSDIR}/graphics +.for docfile in HISTORY HOWTO-PARALLEL README migrate.html + @ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR} +.endfor + @ ${INSTALL_DATA} ${WRKSRC}/graphics/* ${DOCSDIR}/graphics +.endif + +.include <bsd.port.mk> diff --git a/biology/migrate/distinfo b/biology/migrate/distinfo new file mode 100644 index 000000000000..bb6fc4fbd1f9 --- /dev/null +++ b/biology/migrate/distinfo @@ -0,0 +1 @@ +MD5 (migrate-1.2.src.tar.gz) = 697d75319a1b9fc75db59264691b8e43 diff --git a/biology/migrate/pkg-comment b/biology/migrate/pkg-comment new file mode 100644 index 000000000000..1cf2d7f16689 --- /dev/null +++ b/biology/migrate/pkg-comment @@ -0,0 +1 @@ +A program to estimate population sizes and migration rates diff --git a/biology/migrate/pkg-descr b/biology/migrate/pkg-descr new file mode 100644 index 000000000000..126648f42468 --- /dev/null +++ b/biology/migrate/pkg-descr @@ -0,0 +1,14 @@ +Migrate estimates effective population sizes and past migration rates between +two or "n" populations assuming a migration matrix model with asymmetric +migration rates and different subpopulation sizes. The n-population migrate +can use sequence data, microsatellite data or electrophoretic data. + +Migrate forms part of the Lamarc (Likelihood Analysis with Metropolis +Algorithm using Random Coalescence) suite. See: + + http://evolution.genetics.washington.edu/lamarc.html + +Author: Peter Beerli <beerli@genetics.washington.edu> +WWW: http://evolution.genetics.washington.edu/lamarc/migrate.html + +-- Johann Visagie <johann@FreeBSD.org> diff --git a/biology/migrate/pkg-plist b/biology/migrate/pkg-plist new file mode 100644 index 000000000000..ff43dc3f9d5b --- /dev/null +++ b/biology/migrate/pkg-plist @@ -0,0 +1,12 @@ +bin/migrate +bin/migrate-n +%%PORTDOCS%%share/doc/migrate/HISTORY +%%PORTDOCS%%share/doc/migrate/HOWTO-PARALLEL +%%PORTDOCS%%share/doc/migrate/README +%%PORTDOCS%%share/doc/migrate/graphics/librarian.gif +%%PORTDOCS%%share/doc/migrate/graphics/mail.gif +%%PORTDOCS%%share/doc/migrate/graphics/migrate.gif +%%PORTDOCS%%share/doc/migrate/graphics/packet.gif +%%PORTDOCS%%share/doc/migrate/migrate.html +%%PORTDOCS%%@dirrm share/doc/migrate/graphics +%%PORTDOCS%%@dirrm share/doc/migrate |