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Diffstat (limited to 'biology/clustalw/pkg-descr')
| -rw-r--r-- | biology/clustalw/pkg-descr | 19 |
1 files changed, 7 insertions, 12 deletions
diff --git a/biology/clustalw/pkg-descr b/biology/clustalw/pkg-descr index f63c0c96b776..82a997b506ef 100644 --- a/biology/clustalw/pkg-descr +++ b/biology/clustalw/pkg-descr @@ -1,24 +1,19 @@ CLUSTAL W Multiple Sequence Alignment Program -ClustalW was written by Des Higgins (now at University College, Cork, -Ireland) (des@chah.ucc.ie), Julie Thompson (julie@IGBMC.u-strasbg.fr), -Toby Gibson, (Gibson@EMBL-Heidelberg.DE), and Franc'ois Jeanmougin -(pingouin@igbmc.u-strasbg.fr). It is a complete rewrite and upgrade of -the Clustal and ClustalV packages. which were developed by Des -Higgins. New features include the ability to detect read different -input formats (NBRF/PIR, Fasta, EMBL/Swissprot); align old alignments; -produce phylogenetic trees after alignment (Neighbor Joining trees -with a bootstrap option); write different alignment formats (Clustal, -NBRF/PIR, GCG, PHYLIP); full command line interface. It is described -in the following papers: +Clustal W is a multiple alignment program for DNA or proteins. +Clustal W was written by Des Higgins (des@chah.ucc.ie), Julie Thompson +(julie@IGBMC.u-strasbg.fr), and Toby Gibson (Gibson@EMBL-Heidelberg.DE). +Version 2.0 has been completely rewritten in C++. +Original Paper: Thompson, J.D., D. G. Higgins and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680. +Tips: Higgins, D. G., J. D. Thompson, and T. J. Gibson. 1996. Using CLUSTAL for multiple sequence alignments. Methods in Enzymology 266: 383-402. -WWW: http://www-igbmc.u-strasbg.fr/BioInfo/ClustalX/Top.html +WWW: http://bips.u-strasbg.fr/fr/Documentation/ClustalX/ |