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-rw-r--r--biology/pymol/pkg-plist1275
1 files changed, 662 insertions, 613 deletions
diff --git a/biology/pymol/pkg-plist b/biology/pymol/pkg-plist
index c3075955864a..8d8509e8bf8c 100644
--- a/biology/pymol/pkg-plist
+++ b/biology/pymol/pkg-plist
@@ -1,706 +1,754 @@
bin/pymol
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-%%PYTHON_SITELIBDIR%%/pymol/wizarding.py
-%%PYTHON_SITELIBDIR%%/pymol/creating.py
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-%%PYTHON_SITELIBDIR%%/chempy/pdb.pyc
-%%PYTHON_SITELIBDIR%%/chempy/arc.pyc
-%%PYTHON_SITELIBDIR%%/chempy/bonds.pyc
-%%PYTHON_SITELIBDIR%%/chempy/cc1.pyc
-%%PYTHON_SITELIBDIR%%/chempy/protein.pyc
-%%PYTHON_SITELIBDIR%%/chempy/io.pyc
-%%PYTHON_SITELIBDIR%%/chempy/neighbor.pyc
-%%PYTHON_SITELIBDIR%%/chempy/charge.pyc
-%%PYTHON_SITELIBDIR%%/chempy/place.pyc
-%%PYTHON_SITELIBDIR%%/chempy/pkl.pyc
-%%PYTHON_SITELIBDIR%%/chempy/gms.pyc
-%%PYTHON_SITELIBDIR%%/chempy/water_residues.pyc
-%%PYTHON_SITELIBDIR%%/chempy/protein_amber.pyc
-%%PYTHON_SITELIBDIR%%/chempy/bond_amber.pyc
-%%PYTHON_SITELIBDIR%%/chempy/water_amber.pyc
-%%PYTHON_SITELIBDIR%%/chempy/dictdb.pyc
-%%PYTHON_SITELIBDIR%%/chempy/brick.pyc
-%%PYTHON_SITELIBDIR%%/chempy/lst.pyc
-%%PYTHON_SITELIBDIR%%/chempy/protein_amber99.pyc
-%%PYTHON_SITELIBDIR%%/chempy/protein_mmff.pyc
-%%PYTHON_SITELIBDIR%%/chempy/solvate.pyc
-%%PYTHON_SITELIBDIR%%/chempy/sdf.pyc
-%%PYTHON_SITELIBDIR%%/chempy/mmd.pyc
-%%PYTHON_SITELIBDIR%%/chempy/map.pyc
-%%PYTHON_SITELIBDIR%%/chempy/bond_mmff.pyc
-%%PYTHON_SITELIBDIR%%/chempy/cex.pyc
-%%PYTHON_SITELIBDIR%%/chempy/hetatm.pyc
-%%PYTHON_SITELIBDIR%%/chempy/models.pyc
-%%PYTHON_SITELIBDIR%%/chempy/mol.pyc
-%%PYTHON_SITELIBDIR%%/pmg_tk/Demo.py
-%%PYTHON_SITELIBDIR%%/pmg_tk/Setting.py
-%%PYTHON_SITELIBDIR%%/pmg_tk/__init__.py
-%%PYTHON_SITELIBDIR%%/pmg_tk/ColorEditor.py
-%%PYTHON_SITELIBDIR%%/pmg_tk/SetEditor.py
-%%PYTHON_SITELIBDIR%%/pmg_tk/PMGApp.py
-%%PYTHON_SITELIBDIR%%/pmg_tk/startup/apbs_tools.py
-%%PYTHON_SITELIBDIR%%/pmg_tk/startup/__init__.py
-%%PYTHON_SITELIBDIR%%/pmg_tk/startup/remote_pdb_load.py
-%%PYTHON_SITELIBDIR%%/pmg_tk/startup/apbs_tools.pyc
-%%PYTHON_SITELIBDIR%%/pmg_tk/startup/__init__.pyc
-%%PYTHON_SITELIBDIR%%/pmg_tk/startup/remote_pdb_load.pyc
-%%PYTHON_SITELIBDIR%%/pmg_tk/skins/__init__.py
-%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/__init__.py
-%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/builder.py
-%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/__init__.pyc
-%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/builder.pyc
-%%PYTHON_SITELIBDIR%%/pmg_tk/skins/__init__.pyc
-%%PYTHON_SITELIBDIR%%/pmg_tk/Demo.pyc
-%%PYTHON_SITELIBDIR%%/pmg_tk/Setting.pyc
-%%PYTHON_SITELIBDIR%%/pmg_tk/__init__.pyc
-%%PYTHON_SITELIBDIR%%/pmg_tk/ColorEditor.pyc
-%%PYTHON_SITELIBDIR%%/pmg_tk/SetEditor.pyc
-%%PYTHON_SITELIBDIR%%/pmg_tk/PMGApp.pyc
-%%PYTHON_SITELIBDIR%%/pmg_wx/__init__.py
-%%PYTHON_SITELIBDIR%%/pmg_wx/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/win.py
+%%PYTHON_SITELIBDIR%%/pymol/querying.py
+%%PYTHON_SITELIBDIR%%/pymol/querying.pyc
+%%PYTHON_SITELIBDIR%%/pymol/rpc.py
+%%PYTHON_SITELIBDIR%%/pymol/rpc.pyc
+%%PYTHON_SITELIBDIR%%/pymol/selecting.py
+%%PYTHON_SITELIBDIR%%/pymol/selecting.pyc
+%%PYTHON_SITELIBDIR%%/pymol/selector.py
+%%PYTHON_SITELIBDIR%%/pymol/selector.pyc
+%%PYTHON_SITELIBDIR%%/pymol/setting.py
+%%PYTHON_SITELIBDIR%%/pymol/setting.pyc
+%%PYTHON_SITELIBDIR%%/pymol/shortcut.py
+%%PYTHON_SITELIBDIR%%/pymol/shortcut.pyc
+%%PYTHON_SITELIBDIR%%/pymol/util.py
+%%PYTHON_SITELIBDIR%%/pymol/util.pyc
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+%%PYTHON_SITELIBDIR%%/pymol/vfont.pyc
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+%%PYTHON_SITELIBDIR%%/pymol/viewing.pyc
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+%%PYTHON_SITELIBDIR%%/pymol/wizard/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/annotation.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/annotation.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/appearance.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/appearance.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/benchmark.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/benchmark.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/box.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/box.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/charge.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/charge.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/cleanup.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/cleanup.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/demo.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/demo.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/density.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/density.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/distance.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/distance.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/dragging.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/dragging.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/fedora.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/fedora.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/filter.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/filter.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/label.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/label.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/measurement.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/measurement.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/message.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/message.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/mutagenesis.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/mutagenesis.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/pair_fit.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/pair_fit.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/pseudoatom.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/pseudoatom.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/renaming.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/renaming.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/sculpting.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/sculpting.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/security.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/security.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/stereodemo.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/stereodemo.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/toggle.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/toggle.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizarding.py
+%%PYTHON_SITELIBDIR%%/pymol/wizarding.pyc
+%%PYTHON_SITELIBDIR%%/pymol/xray.py
+%%PYTHON_SITELIBDIR%%/pymol/xray.pyc
+%%PYTHON_SITELIBDIR%%/pymol/xwin.py
+%%PYTHON_SITELIBDIR%%/pymol/xwin.pyc
@dirrm %%PYTHON_SITELIBDIR%%/pymol/wizard
@dirrm %%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/ref
@dirrm %%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/inp
@@ -732,6 +780,7 @@ bin/pymol
@dirrm %%PYTHON_SITELIBDIR%%/pymol/opengl/glu
@dirrm %%PYTHON_SITELIBDIR%%/pymol/opengl/gl
@dirrm %%PYTHON_SITELIBDIR%%/pymol/opengl
+@dirrm %%PYTHON_SITELIBDIR%%/pymol/contrib
@dirrm %%PYTHON_SITELIBDIR%%/pymol
@dirrm %%PYTHON_SITELIBDIR%%/pmg_wx
@dirrm %%PYTHON_SITELIBDIR%%/pmg_tk/startup