diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/p5-AcePerl/Makefile | 18 | ||||
| -rw-r--r-- | biology/p5-AcePerl/distinfo | 2 | ||||
| -rw-r--r-- | biology/p5-AcePerl/files/patch-ac | 17 | ||||
| -rw-r--r-- | biology/p5-AcePerl/pkg-plist | 4 |
4 files changed, 28 insertions, 13 deletions
diff --git a/biology/p5-AcePerl/Makefile b/biology/p5-AcePerl/Makefile index 3e93e8e40b7d..7fff41cc3db4 100644 --- a/biology/p5-AcePerl/Makefile +++ b/biology/p5-AcePerl/Makefile @@ -6,7 +6,7 @@ # PORTNAME= AcePerl -PORTVERSION= 1.75 +PORTVERSION= 1.82 CATEGORIES= biology databases perl5 MASTER_SITES= ${MASTER_SITE_PERL_CPAN} MASTER_SITE_SUBDIR= Ace @@ -16,11 +16,14 @@ MAINTAINER= bio@freebsd.net PERL_CONFIGURE= yes -MAN3= Ace.3 Ace::Browser::AceSubs.3 Ace::Graphics::Fk.3 \ +MAN3= Ace.3 Ace::Browser::AceSubs.3 Ace::Browser::SearchSubs.3 \ + Ace::Browser::SiteDefs.3 Ace::Graphics::Fk.3 \ Ace::Graphics::Glyph.3 Ace::Graphics::Glyph::anchored_arrow.3 \ - Ace::Graphics::Glyph::arrow.3 Ace::Graphics::Glyph::dot.3 \ - Ace::Graphics::Glyph::ex.3 Ace::Graphics::Glyph::group.3 \ - Ace::Graphics::Glyph::line.3 Ace::Graphics::Glyph::primers.3 \ + Ace::Graphics::Glyph::arrow.3 Ace::Graphics::Glyph::box.3 \ + Ace::Graphics::Glyph::dot.3 Ace::Graphics::Glyph::ex.3 \ + Ace::Graphics::Glyph::graded_segments.3 \ + Ace::Graphics::Glyph::group.3 Ace::Graphics::Glyph::line.3 \ + Ace::Graphics::Glyph::primers.3 \ Ace::Graphics::Glyph::segments.3 Ace::Graphics::Glyph::span.3 \ Ace::Graphics::Glyph::toomany.3 \ Ace::Graphics::Glyph::transcript.3 \ @@ -29,8 +32,9 @@ MAN3= Ace.3 Ace::Browser::AceSubs.3 Ace::Graphics::Fk.3 \ Ace::Graphics::Track.3 Ace::Iterator.3 Ace::Local.3 \ Ace::Model.3 Ace::Object.3 Ace::Sequence.3 \ Ace::Sequence::Feature.3 Ace::Sequence::FeatureList.3 \ - Ace::Sequence::GappedAlignment.3 Ace::Sequence::Homol.3 \ - Ace::Sequence::Multi.3 Ace::Sequence::Transcript.3 + Ace::Sequence::GappedAlignment.3 Ace::Sequence::Gene.3 \ + Ace::Sequence::Homol.3 Ace::Sequence::Multi.3 \ + Ace::Sequence::Transcript.3 MANPREFIX= ${PREFIX}/lib/perl5/${PERL_VERSION} post-patch: diff --git a/biology/p5-AcePerl/distinfo b/biology/p5-AcePerl/distinfo index 3bbe0f036f72..c24be2385f39 100644 --- a/biology/p5-AcePerl/distinfo +++ b/biology/p5-AcePerl/distinfo @@ -1 +1 @@ -MD5 (AcePerl-1.75.tar.gz) = a59ce125e8373710bd18191464558cb0 +MD5 (AcePerl-1.82.tar.gz) = e90c1e3d1e28b92ce8bdb95704462a0d diff --git a/biology/p5-AcePerl/files/patch-ac b/biology/p5-AcePerl/files/patch-ac index 90194f8b38d7..719769644488 100644 --- a/biology/p5-AcePerl/files/patch-ac +++ b/biology/p5-AcePerl/files/patch-ac @@ -1,11 +1,20 @@ ---- Makefile.PL.orig Thu Aug 31 19:02:21 2000 -+++ Makefile.PL Mon Oct 9 16:43:32 2000 -@@ -1,7 +1,7 @@ - use Config; +--- Makefile.PL.orig Fri Sep 28 16:13:04 2001 ++++ Makefile.PL Fri Jan 25 14:11:26 2002 +@@ -2,7 +2,7 @@ use ExtUtils::MakeMaker qw(prompt WriteMakefile); + use File::Path; -my $choice; +my $choice = 3; while (!$choice) { $reply = prompt( "\nWhat do you want to build?\n\n" . +@@ -22,8 +22,6 @@ + push @extlib,'Freesubs' if $choice >= 2; + push @extlib,'RPC' if $choice >= 3; + +-print "\n"; +-setup_sitedefs() if prompt("Do you want to install Ace::Browser? ","n") =~ /[yY]/; + + my $headers = "./ace/wh"; + WriteMakefile( diff --git a/biology/p5-AcePerl/pkg-plist b/biology/p5-AcePerl/pkg-plist index d07a2459f6b2..587c387bbf2c 100644 --- a/biology/p5-AcePerl/pkg-plist +++ b/biology/p5-AcePerl/pkg-plist @@ -9,9 +9,11 @@ lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Fk.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/anchored_arrow.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/arrow.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/box.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/crossbox.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/dot.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/ex.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/graded_segments.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/group.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/line.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/primers.pm @@ -33,11 +35,11 @@ lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Feature.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/FeatureList.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/GappedAlignment.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Gene.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Homol.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Multi.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Transcript.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/SocketServer.pm -lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/GFF/Filehandle.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/.packlist lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/Freesubs/Freesubs.bs lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/Freesubs/Freesubs.so |