diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/libsbml/Makefile | 2 | ||||
| -rw-r--r-- | biology/libsbml/distinfo | 6 | ||||
| -rw-r--r-- | biology/libsbml/pkg-plist | 25 |
3 files changed, 28 insertions, 5 deletions
diff --git a/biology/libsbml/Makefile b/biology/libsbml/Makefile index fccc4f6688bb..5a83e5b21442 100644 --- a/biology/libsbml/Makefile +++ b/biology/libsbml/Makefile @@ -6,7 +6,7 @@ # PORTNAME= libsbml -PORTVERSION= 4.0.1 +PORTVERSION= 4.1.0 CATEGORIES= biology devel MASTER_SITES= SF MASTER_SITE_SUBDIR= sbml/${PORTNAME}/${PORTVERSION} diff --git a/biology/libsbml/distinfo b/biology/libsbml/distinfo index f5bc52ed505b..fbd37a8f09c4 100644 --- a/biology/libsbml/distinfo +++ b/biology/libsbml/distinfo @@ -1,3 +1,3 @@ -MD5 (libsbml-4.0.1-src.zip) = 0bded2508b3be9b150573771a33e5465 -SHA256 (libsbml-4.0.1-src.zip) = f5b40e18ff0ca39da5881728a3f5b79011ee0ed3732547d81fdbdc42a0b13e40 -SIZE (libsbml-4.0.1-src.zip) = 8091737 +MD5 (libsbml-4.1.0-src.zip) = 91648a9ed4937ec801b1c5ac28509514 +SHA256 (libsbml-4.1.0-src.zip) = 6818e03305202afaf44a4f1848ff414492774d27fd6aec321c3c53c7ff7a4ca1 +SIZE (libsbml-4.1.0-src.zip) = 9244073 diff --git a/biology/libsbml/pkg-plist b/biology/libsbml/pkg-plist index 3a897153fb29..48ee5bf67ca0 100644 --- a/biology/libsbml/pkg-plist +++ b/biology/libsbml/pkg-plist @@ -9,6 +9,7 @@ include/sbml/FunctionDefinition.h include/sbml/InitialAssignment.h include/sbml/KineticLaw.h include/sbml/ListOf.h +include/sbml/LocalParameter.h include/sbml/Model.h include/sbml/Parameter.h include/sbml/Reaction.h @@ -19,6 +20,7 @@ include/sbml/SBMLErrorLog.h include/sbml/SBMLErrorTable.h include/sbml/SBMLNamespaces.h include/sbml/SBMLReader.h +include/sbml/SBMLTransforms.h include/sbml/SBMLTypeCodes.h include/sbml/SBMLTypes.h include/sbml/SBMLVisitor.h @@ -79,6 +81,7 @@ include/sbml/validator/L2v1CompatibilityValidator.h include/sbml/validator/L2v2CompatibilityValidator.h include/sbml/validator/L2v3CompatibilityValidator.h include/sbml/validator/L2v4CompatibilityValidator.h +include/sbml/validator/L3v1CompatibilityValidator.h include/sbml/validator/MathMLConsistencyValidator.h include/sbml/validator/ModelingPracticeValidator.h include/sbml/validator/OverdeterminedValidator.h @@ -114,7 +117,7 @@ include/sbml/xml/XMLParser.h include/sbml/xml/XMLToken.h include/sbml/xml/XMLTokenizer.h include/sbml/xml/XMLTriple.h -lib/libsbml.so.4 +lib/libsbml.so.5 lib/libsbml.so lib/libsbml.la lib/libsbml.a @@ -153,6 +156,8 @@ lib/libsbml.a %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/Makefile %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/Makefile.in %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addCVTerms.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addingEvidenceCodes_1.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addingEvidenceCodes_2.cpp %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addModelHistory.cpp %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/appendAnnotation.cpp %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/convertSBML.cpp @@ -229,6 +234,23 @@ lib/libsbml.a %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/overdetermined.xml %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/twodimensional.xml %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/units.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/algebraicrules.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/assignmentrules.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/boundarycondition.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/conversionfactor1.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/conversionfactor2.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/delay.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/dimerization.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/enzymekinetics.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/events.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/fullydeterminedevent.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/functiondef.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/membrane.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/multicomp.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/overdetermined.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/README.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/twoalgebraicrules.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/twodimensional.xml %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++ %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/csharp @@ -237,6 +259,7 @@ lib/libsbml.a %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/perl %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/python %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/ruby +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec/level-3 %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec/level-2 %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models |