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-rw-r--r--biology/ariadne/Makefile8
-rw-r--r--biology/artemis/Makefile8
-rw-r--r--biology/belvu/Makefile9
-rw-r--r--biology/blast/Makefile9
-rw-r--r--biology/blat/Makefile9
-rw-r--r--biology/dotter/Makefile9
-rw-r--r--biology/embassy/Makefile9
-rw-r--r--biology/emboss/Makefile8
-rw-r--r--biology/fasta3/Makefile9
-rw-r--r--biology/finchtv/Makefile9
-rw-r--r--biology/hmmer/Makefile8
-rw-r--r--biology/jalview/Makefile8
-rw-r--r--biology/lagan/Makefile8
-rw-r--r--biology/ncbi-toolkit/Makefile9
-rw-r--r--biology/p5-bioperl/Makefile8
-rw-r--r--biology/primer3/Makefile8
-rw-r--r--biology/seaview/Makefile9
-rw-r--r--biology/ssaha/Makefile8
-rw-r--r--biology/t_coffee/Makefile9
-rw-r--r--biology/treeviewx/Makefile9
20 files changed, 40 insertions, 131 deletions
diff --git a/biology/ariadne/Makefile b/biology/ariadne/Makefile
index d271b5877e86..166df0387e33 100644
--- a/biology/ariadne/Makefile
+++ b/biology/ariadne/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: ariadne
-# Date created: 10 Jun 2004
-# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar>
-#
+# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$
-#
PORTNAME= ariadne
PORTVERSION= 1.3
@@ -11,7 +7,7 @@ CATEGORIES= biology
MASTER_SITES= http://www.well.ox.ac.uk/ariadne/
EXTRACT_SUFX= .tar.Z
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= Programs to compare protein sequences and profiles
WRKSRC= ${WRKDIR}/SRC-${PORTVERSION}
diff --git a/biology/artemis/Makefile b/biology/artemis/Makefile
index 43e8ccd0a7ee..37995f38f814 100644
--- a/biology/artemis/Makefile
+++ b/biology/artemis/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: artemis
-# Date created: 10 Nov 2001
-# Whom: camson@bilateral.com.au
-#
+# Created by: camson@bilateral.com.au
# $FreeBSD$
-#
PORTNAME= artemis
PORTVERSION= 9
@@ -13,7 +9,7 @@ MASTER_SITES= http://www.sanger.ac.uk/Software/Artemis/v${PORTVERSION}/ \
ftp://ftp.sanger.ac.uk/pub/pathogens/software/artemis/v${PORTVERSION}/
DISTNAME= artemis_compiled_v${PORTVERSION}
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= A DNA sequence viewer and annotation tool
WRKSRC= ${WRKDIR}/${PORTNAME}
diff --git a/biology/belvu/Makefile b/biology/belvu/Makefile
index c8bbf7ad6b5c..5a669ff5ab47 100644
--- a/biology/belvu/Makefile
+++ b/biology/belvu/Makefile
@@ -1,10 +1,5 @@
-# ex:ts=8
-# New ports collection makefile for: belvu
-# Date created: 11 Jan 2006
-# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar>
-#
+# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$
-#
PORTNAME= belvu
PORTVERSION= 2.29
@@ -14,7 +9,7 @@ DISTNAME= ${PORTNAME}.LIN_32bit_${PORTVERSION}
EXTRACT_SUFX= #
EXTRACT_ONLY= #
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= A viewer for multiple sequence alignments
USE_LINUX= yes
diff --git a/biology/blast/Makefile b/biology/blast/Makefile
index 125be954b7ee..fc0f48c3f205 100644
--- a/biology/blast/Makefile
+++ b/biology/blast/Makefile
@@ -1,10 +1,5 @@
-# ex:ts=8
-# New ports collection makefile for: WU BLAST
-# Date created: 27 May 2004
-# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar>
-#
+# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$
-#
PORTNAME= wu-blast
PORTVERSION= 2.0
@@ -13,7 +8,7 @@ CATEGORIES= biology
MASTER_SITES= #
EXTRACT_SUFX= .tar.Z
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= WU BLAST, a software package for sequence similarity searches
# Distfiles change rapidly, but since they can only be downloaded from
diff --git a/biology/blat/Makefile b/biology/blat/Makefile
index bd899cf28a42..891973124098 100644
--- a/biology/blat/Makefile
+++ b/biology/blat/Makefile
@@ -1,10 +1,5 @@
-# ex:ts=8
-# New ports collection makefile for: blat
-# Date created: 08 Dec 2005
-# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar>
-#
+# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$
-#
PORTNAME= blat
PORTVERSION= 34
@@ -12,7 +7,7 @@ CATEGORIES= biology
MASTER_SITES= http://www.soe.ucsc.edu/~kent/src/
DISTNAME= ${PORTNAME}Src${PORTVERSION}
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= A fast tool for local sequence similarity searches
USE_ZIP= yes
diff --git a/biology/dotter/Makefile b/biology/dotter/Makefile
index bd5ed531bd95..1981ca985477 100644
--- a/biology/dotter/Makefile
+++ b/biology/dotter/Makefile
@@ -1,10 +1,5 @@
-# ex:ts=8
-# New ports collection makefile for: dotter
-# Date created: 11 Jan 2006
-# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar>
-#
+# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$
-#
PORTNAME= dotter
PORTVERSION= 20021204 # last modified date in FTP server
@@ -16,7 +11,7 @@ EXTRACT_SUFX= #
DIST_SUBDIR= ${PORTNAME}-${PORTVERSION}
EXTRACT_ONLY= #
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= A viewer for multiple sequence alignments
USE_LINUX= yes
diff --git a/biology/embassy/Makefile b/biology/embassy/Makefile
index cbb37e290d66..b127685596a7 100644
--- a/biology/embassy/Makefile
+++ b/biology/embassy/Makefile
@@ -1,10 +1,5 @@
-# ex:ts=8
-# New ports collection makefile for: embassy
-# Date created: 1.November.2004
-# Whom: Fernan Aguero <fernan@iib.unsamn.edu.ar>
-#
+# Created by: Fernan Aguero <fernan@iib.unsamn.edu.ar>
# $FreeBSD$
-#
PORTNAME= embassy
PORTVERSION= 6.2.0
@@ -13,7 +8,7 @@ CATEGORIES= biology
MASTER_SITES= ftp://emboss.open-bio.org/pub/EMBOSS/
DIST_SUBDIR= emboss
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= A collection of contributed EMBOSS applications
LIB_DEPENDS= nucleus.6:${PORTSDIR}/biology/emboss
diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile
index b9a5e0b31a43..d29c6d6fe27c 100644
--- a/biology/emboss/Makefile
+++ b/biology/emboss/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: emboss
-# Date created: 31 July 2000
-# Whom: Johann Visagie <johann@egenetics.com>
-#
+# Created by: Johann Visagie <johann@egenetics.com>
# $FreeBSD$
-#
PORTNAME= emboss
PORTVERSION= 6.2.0
@@ -14,7 +10,7 @@ MASTER_SITES= ftp://emboss.open-bio.org/pub/EMBOSS/
DISTNAME= ${RELEASE}
DIST_SUBDIR= ${PORTNAME}
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= A collection of open source tools for genetic sequence analysis
BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw \
diff --git a/biology/fasta3/Makefile b/biology/fasta3/Makefile
index f6cc152969f8..2fc07fdd4af1 100644
--- a/biology/fasta3/Makefile
+++ b/biology/fasta3/Makefile
@@ -1,10 +1,5 @@
-# ex:ts=8
-# New ports collection makefile for: fasta3
-# Date created: 29 January 2001
-# Whom: Johann Visagie <johann@egenetics.com>
-#
+# Created by: Johann Visagie <johann@egenetics.com>
# $FreeBSD$
-#
PORTNAME= fasta3
PORTVERSION= 36.3.2
@@ -12,7 +7,7 @@ CATEGORIES= biology
MASTER_SITES= http://faculty.virginia.edu/wrpearson/fasta/fasta36/
DISTNAME= fasta-${PORTVERSION}
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= A collection of programs for searching DNA and protein databases
NO_CDROM= May not be sold or incorporated into a commercial product
diff --git a/biology/finchtv/Makefile b/biology/finchtv/Makefile
index 2cfb6af26c32..7220ed11b1b0 100644
--- a/biology/finchtv/Makefile
+++ b/biology/finchtv/Makefile
@@ -1,10 +1,5 @@
-# ex:ts=8
-# New ports collection makefile for: FinchTV
-# Date created: 10 Aug 2004
-# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar>
-#
+# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$
-#
PORTNAME= finchtv
PORTVERSION= 1.3.1
@@ -12,7 +7,7 @@ CATEGORIES= biology
MASTER_SITES= http://www.geospiza.com/finchtv/download/programs/linux/
DISTNAME= ${PORTNAME}_${PORTVERSION:S/./_/g}
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= A chromatogram trace viewer
USE_LINUX?= yes
diff --git a/biology/hmmer/Makefile b/biology/hmmer/Makefile
index a61d25106172..0c4dd242a47b 100644
--- a/biology/hmmer/Makefile
+++ b/biology/hmmer/Makefile
@@ -1,16 +1,12 @@
-# New ports collection Makefile for: hmmer
-# Date created: June 29 1998
-# Whom: barnhart@genetics.wustl.edu
-#
+# Created by: barnhart@genetics.wustl.edu
# $FreeBSD$
-#
PORTNAME= hmmer
PORTVERSION= 2.3.2
CATEGORIES= biology
MASTER_SITES= ftp://selab.janelia.org/pub/software/hmmer/CURRENT/
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= Profile hidden Markov models for biological sequence analysis
GNU_CONFIGURE= yes
diff --git a/biology/jalview/Makefile b/biology/jalview/Makefile
index b175f72f376e..12ac7ec80ff0 100644
--- a/biology/jalview/Makefile
+++ b/biology/jalview/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: jalview
-# Date created: 11 Jan 2006
-# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar>
-#
+# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$
-#
PORTNAME= jalview
PORTVERSION= 2.07
@@ -12,7 +8,7 @@ CATEGORIES= biology java
MASTER_SITES= http://www.jalview.org/source/
DISTNAME= ${PORTNAME}_${PORTVERSION:S/./_/}
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= A viewer and editor for multiple sequence alignments
USE_JAVA= yes
diff --git a/biology/lagan/Makefile b/biology/lagan/Makefile
index a1a3bb052182..574fef7c771e 100644
--- a/biology/lagan/Makefile
+++ b/biology/lagan/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: lagan
-# Date created: 07 Dec 2005
-# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar>
-#
+# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$
-#
PORTNAME= lagan
PORTVERSION= 1.2
@@ -11,7 +7,7 @@ CATEGORIES= biology
MASTER_SITES= http://lagan.stanford.edu/lagan_web/
DISTNAME= ${PORTNAME}${PORTVERSION:S/.//}
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= Efficient tools for large-scale multiple alignments of genomic DNA
LAGAN_DIR= ${PREFIX}/${PORTNAME}
diff --git a/biology/ncbi-toolkit/Makefile b/biology/ncbi-toolkit/Makefile
index d890f2ab5275..aefb42e3cd67 100644
--- a/biology/ncbi-toolkit/Makefile
+++ b/biology/ncbi-toolkit/Makefile
@@ -1,10 +1,5 @@
-# ex:ts=8
-# New ports collection makefile for: NCBI
-# Date created: 03 April 2000
-# Whom: tonym
-#
+# Created by: tonym
# $FreeBSD$
-#
PORTNAME= ncbi-toolkit
PORTVERSION= 2009.03.01 # containing BLAST v2.2.19
@@ -14,7 +9,7 @@ MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g
DISTNAME= ncbi
DIST_SUBDIR= ${PORTNAME}-${PORTVERSION}
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
USE_MOTIF= yes
diff --git a/biology/p5-bioperl/Makefile b/biology/p5-bioperl/Makefile
index aa9d68d0db84..ac9e1bce6686 100644
--- a/biology/p5-bioperl/Makefile
+++ b/biology/p5-bioperl/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: p5-bioperl
-# Date created: 28 July 2000
-# Whom: Johann Visagie <johann@egenetics.com>
-#
+# Created by: Johann Visagie <johann@egenetics.com>
# $FreeBSD$
-#
PORTNAME= bioperl
PORTVERSION= 1.6.1
@@ -14,7 +10,7 @@ MASTER_SITES= http://bioperl.org/DIST/ \
PKGNAMEPREFIX= p5-
DISTNAME= BioPerl-${PORTVERSION}
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= A collection of Perl modules for bioinformatics
BUILD_DEPENDS= ${LOCALBASE}/lib/perl5/${PERL_VERSION}/Text/Wrap.pm:${PORTSDIR}/lang/${PERL_PORT} \
diff --git a/biology/primer3/Makefile b/biology/primer3/Makefile
index 01c1f8d9bb75..bf4cd662b465 100644
--- a/biology/primer3/Makefile
+++ b/biology/primer3/Makefile
@@ -1,16 +1,12 @@
-# New ports collection makefile for: primer3
-# Date created: 25 February 2002
-# Whom: Tony Maher <tonym@biolateral.com.au>
-#
+# Created by: Tony Maher <tonym@biolateral.com.au>
# $FreeBSD$
-#
PORTNAME= primer3
PORTVERSION= 1.1.4
CATEGORIES= biology
MASTER_SITES= SF
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= Primer3 helps to choose primers for PCR reactions
USE_GMAKE= yes
diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile
index c7b4308075c7..98273d96ba31 100644
--- a/biology/seaview/Makefile
+++ b/biology/seaview/Makefile
@@ -1,10 +1,5 @@
-# ex:ts=8
-# New ports collection Makefile for: seaview
-# Date created: Dec 5 1997
-# Whom: frankch@waru.life.nthu.edu.tw
-#
+# Created by: frankch@waru.life.nthu.edu.tw
# $FreeBSD$
-#
PORTNAME= seaview
PORTVERSION= 2006.02.13
@@ -14,7 +9,7 @@ MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/
DISTNAME= ${PORTNAME}${PORTVERSION:S/.//g}
EXTRACT_SUFX= .tar
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= Multiple DNA/protein sequence alignment editor
LIB_DEPENDS= fltk.1:${PORTSDIR}/x11-toolkits/fltk \
diff --git a/biology/ssaha/Makefile b/biology/ssaha/Makefile
index 4051ece68a55..fa6a58b06cf1 100644
--- a/biology/ssaha/Makefile
+++ b/biology/ssaha/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: ssaha
-# Date created: 12.Jun.2008
-# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar>
-#
+# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$
-#
PORTNAME= ssaha
PORTVERSION= 3.1c
@@ -12,7 +8,7 @@ CATEGORIES= biology
MASTER_SITES= http://www.sanger.ac.uk/Software/analysis/${PORTNAME:U}/
DISTNAME= ${PORTNAME}_v${PORTVERSION:S/.//}
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= Very fast matching and alignment of DNA sequences
NO_WRKSUBDIR= yes
diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile
index dc4f15eef490..216884fc8d47 100644
--- a/biology/t_coffee/Makefile
+++ b/biology/t_coffee/Makefile
@@ -1,10 +1,5 @@
-# ex:ts=8
-# New ports collection makefile for: t_coffee
-# Date created: 27 June 2001
-# Whom: Johann Visagie <wjv@FreeBSD.org>
-#
+# Created by: Johann Visagie <wjv@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= t_coffee
PORTVERSION= 5.68
@@ -12,7 +7,7 @@ CATEGORIES= biology
MASTER_SITES= http://www.tcoffee.org/Packages/
DISTNAME= T-COFFEE_distribution_Version_${PORTVERSION}
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= A multiple DNA or protein sequence alignment package
BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw
diff --git a/biology/treeviewx/Makefile b/biology/treeviewx/Makefile
index 77929ed61c08..e4644088d39b 100644
--- a/biology/treeviewx/Makefile
+++ b/biology/treeviewx/Makefile
@@ -1,10 +1,5 @@
-# ex:ts=8
-# Ports collection makefile for: treeviewx
-# Date created: 04 August 2001
-# Whom: tonym
-#
+# Created by: tonym
# $FreeBSD$
-#
PORTNAME= treeviewx
PORTVERSION= 0.5.1
@@ -13,7 +8,7 @@ CATEGORIES= biology
MASTER_SITES= http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/${PORTVERSION:S/.1//}/
DISTNAME= tv-${PORTVERSION}
-MAINTAINER= fernan@iib.unsam.edu.ar
+MAINTAINER= ports@FreeBSD.org
COMMENT= A phylogenetic tree viewer
USE_WX= yes
generated by cgit (git 2.34.1) at 2024-11-16 02:32:21 +0800