diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/garlic/Makefile | 6 | ||||
| -rw-r--r-- | biology/garlic/distinfo | 4 | ||||
| -rw-r--r-- | biology/garlic/pkg-plist | 2 |
3 files changed, 8 insertions, 4 deletions
diff --git a/biology/garlic/Makefile b/biology/garlic/Makefile index 1678a0548e9f..eb11afc4ec65 100644 --- a/biology/garlic/Makefile +++ b/biology/garlic/Makefile @@ -7,6 +7,7 @@ PORTNAME= garlic PORTVERSION= 1.4 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= http://garlic.mefos.hr/sources/garlic-${PORTVERSION}/ DISTFILES= ${DISTNAME}${EXTRACT_SUFX} @@ -26,10 +27,11 @@ ALL_TARGET= # empty .if defined(WITH_OPTIMIZED_FLAGS) CFLAGS+= -O3 -ffast-math -finline-functions -fomit-frame-pointer -funroll-loops -fexpensive-optimizations -malign-double .if (${MACHINE_ARCH} == "i386") -CFLAGS+= -mcpu=i686 -march=i686 -mfancy-math-387 +CFLAGS+= -mfancy-math-387 -mpreferred-stack-boundary=3 .endif # i386 .endif + post-patch: @${REINPLACE_CMD} -e 's|%%X11BASE%%|${X11BASE}|g ; \ s|%%LOCALBASE%%|${LOCALBASE}|g ;\ @@ -50,7 +52,7 @@ do-install: @${INSTALL_DATA} ${WRKSRC}/*.script ${EXAMPLESDIR} @${MKDIR} ${DOCSDIR} @${MKDIR} ${WRKDIR}/doc - @cd ${WRKDIR}/doc ; ${TAR} xvfz ${DISTDIR}/${DISTNAME}-doc${EXTRACT_SUFX} + @(cd ${WRKDIR}/doc ; ${TAR} xfz ${DISTDIR}/${DISTNAME}-doc${EXTRACT_SUFX} ) @${TAR} -C ${WRKDIR}/doc/${DISTNAME} -cf - . | \ ${TAR} -C ${DOCSDIR} -xf - @${FIND} ${DOCSDIR} | ${XARGS} ${CHOWN} ${SHAREOWN}:${SHAREGRP} diff --git a/biology/garlic/distinfo b/biology/garlic/distinfo index c69a108775f9..5d195dd0af21 100644 --- a/biology/garlic/distinfo +++ b/biology/garlic/distinfo @@ -1,2 +1,2 @@ -MD5 (garlic-1.4.tar.gz) = d20462ca2aa0ea7fe78d56b5905558cd -MD5 (garlic-1.4-doc.tar.gz) = 8272b727100a742fe68b7b209d546a89 +MD5 (garlic-1.4.tar.gz) = 054b8fdb3575609229bac2f743c85cd9 +MD5 (garlic-1.4-doc.tar.gz) = f53f758ca785630c22d19d3744015122 diff --git a/biology/garlic/pkg-plist b/biology/garlic/pkg-plist index ba1555bf8560..f3bad703eb3e 100644 --- a/biology/garlic/pkg-plist +++ b/biology/garlic/pkg-plist @@ -290,6 +290,7 @@ share/garlic/residues.pdb %%PORTDOCS%%%%EXAMPLESDIR%%/patterns2.script %%PORTDOCS%%%%EXAMPLESDIR%%/patterns3.script %%PORTDOCS%%%%EXAMPLESDIR%%/phe.pdb +%%PORTDOCS%%%%EXAMPLESDIR%%/porin.script %%PORTDOCS%%%%EXAMPLESDIR%%/porins.script %%PORTDOCS%%%%EXAMPLESDIR%%/porins2.script %%PORTDOCS%%%%EXAMPLESDIR%%/porins3.script @@ -302,4 +303,5 @@ share/garlic/residues.pdb %%PORTDOCS%%%%EXAMPLESDIR%%/singlebond.pdb %%PORTDOCS%%%%EXAMPLESDIR%%/test.script %%PORTDOCS%%%%EXAMPLESDIR%%/trp.pdb +%%PORTDOCS%%%%EXAMPLESDIR%%/water.pdb %%PORTDOCS%%@dirrm %%EXAMPLESDIR%% |