diff options
Diffstat (limited to 'biology')
-rw-r--r-- | biology/Makefile | 1 | ||||
-rw-r--r-- | biology/libgenome/Makefile | 26 | ||||
-rw-r--r-- | biology/libgenome/distinfo | 1 | ||||
-rw-r--r-- | biology/libgenome/pkg-comment | 1 | ||||
-rw-r--r-- | biology/libgenome/pkg-descr | 12 | ||||
-rw-r--r-- | biology/libgenome/pkg-plist | 340 |
6 files changed, 381 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 5be076006729..88c38ca56a43 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -24,6 +24,7 @@ SUBDIR += hmmer SUBDIR += kinemage SUBDIR += lamarc + SUBDIR += libgenome SUBDIR += migrate SUBDIR += molden SUBDIR += mopac diff --git a/biology/libgenome/Makefile b/biology/libgenome/Makefile new file mode 100644 index 000000000000..3286693eb207 --- /dev/null +++ b/biology/libgenome/Makefile @@ -0,0 +1,26 @@ +# ex:ts=8 +# Ports collection makefile for: libgenome +# Date created: Jul 30, 2002 +# Whom: ijliao +# +# $FreeBSD$ +# + +PORTNAME= libgenome +PORTVERSION= 0.5.0 +CATEGORIES= biology +MASTER_SITES= http://www.libgenome.org/releases/ +DISTNAME= libGenome-${PORTVERSION} + +MAINTAINER= ports@FreeBSD.org + +USE_LIBTOOL= yes +INSTALLS_SHLIB= yes + +.if !defined(NOPORTDOCS) +post-install: + @${MKDIR} ${DOCSDIR} + ${CP} -R ${WRKSRC}/doc/html/* ${DOCSDIR} +.endif + +.include <bsd.port.mk> diff --git a/biology/libgenome/distinfo b/biology/libgenome/distinfo new file mode 100644 index 000000000000..b5a1be9e6724 --- /dev/null +++ b/biology/libgenome/distinfo @@ -0,0 +1 @@ +MD5 (libGenome-0.5.0.tar.gz) = dc4351115328a4d10fb52850ee6675d1 diff --git a/biology/libgenome/pkg-comment b/biology/libgenome/pkg-comment new file mode 100644 index 000000000000..86930ba80fb8 --- /dev/null +++ b/biology/libgenome/pkg-comment @@ -0,0 +1 @@ +Toolkit for developing bioinformatic related software in C++ diff --git a/biology/libgenome/pkg-descr b/biology/libgenome/pkg-descr new file mode 100644 index 000000000000..5adbdf562353 --- /dev/null +++ b/biology/libgenome/pkg-descr @@ -0,0 +1,12 @@ +libGenome is a freely available toolkit for developing bioinformatic related +software in C++. It is intended to take the hassle out of performing common +tasks on genetic sequence and annotation data. + +Among other things, libGenome can help you: + - Read and write Multi-FastA format files + - Read and write GenBank flat file database entries + - Append, chop, truncate, reverse, complement, translate, and otherwise + mangle sequence data + - Access annotation in GenBank flat files + +WWW: http://www.libgenome.org/ diff --git a/biology/libgenome/pkg-plist b/biology/libgenome/pkg-plist new file mode 100644 index 000000000000..540a5c61176b --- /dev/null +++ b/biology/libgenome/pkg-plist @@ -0,0 +1,340 @@ +include/gn/gnABISource.h +include/gn/gnBaseFeature.h +include/gn/gnBaseFilter.h +include/gn/gnBaseHeader.h +include/gn/gnBaseQualifier.h +include/gn/gnBaseSource.h +include/gn/gnBaseSpec.h +include/gn/gnClone.h +include/gn/gnCompare.h +include/gn/gnContigSpec.h +include/gn/gnDNASequence.h +include/gn/gnDNXSource.h +include/gn/gnDataBaseSource.h +include/gn/gnDebug.h +include/gn/gnDefs.h +include/gn/gnException.h +include/gn/gnExceptionCode.h +include/gn/gnFASSource.h +include/gn/gnFastTranslator.h +include/gn/gnFeature.h +include/gn/gnFileContig.h +include/gn/gnFileSource.h +include/gn/gnFilter.h +include/gn/gnFragmentSpec.h +include/gn/gnGBKSource.h +include/gn/gnGenomeSpec.h +include/gn/gnLocation.h +include/gn/gnMultiSpec.h +include/gn/gnPosSpecificTranslator.h +include/gn/gnProteinSequence.h +include/gn/gnRAWSource.h +include/gn/gnRNASequence.h +include/gn/gnSEQSource.h +include/gn/gnSequence.h +include/gn/gnSetup.h +include/gn/gnSourceFactory.h +include/gn/gnSourceHeader.h +include/gn/gnSourceQualifier.h +include/gn/gnSourceSpec.h +include/gn/gnStringHeader.h +include/gn/gnStringQualifier.h +include/gn/gnStringSpec.h +include/gn/gnStringTools.h +include/gn/gnTranslator.h +include/gn/gnVersion.h +@dirrm include/gn +lib/libGenome.a +lib/libGenome.la +lib/libGenome.so +lib/libGenome.so.0 +%%PORTDOCS%%share/doc/libgenome/GNPREC_8H-source.html 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