diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/p5-BioPerl-Run/Makefile | 4 | ||||
| -rw-r--r-- | biology/p5-BioPerl-Run/distinfo | 6 | ||||
| -rw-r--r-- | biology/p5-BioPerl-Run/pkg-plist | 18 |
3 files changed, 5 insertions, 23 deletions
diff --git a/biology/p5-BioPerl-Run/Makefile b/biology/p5-BioPerl-Run/Makefile index 090f5923d5af..27a06f98bcb8 100644 --- a/biology/p5-BioPerl-Run/Makefile +++ b/biology/p5-BioPerl-Run/Makefile @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= BioPerl-Run -PORTVERSION= 1.007001 -PORTREVISION= 1 +PORTVERSION= 1.007002 CATEGORIES= biology perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:CJFIELDS @@ -17,6 +16,7 @@ LICENSE_COMB= dual LICENSE_FILE_ART10= ${WRKSRC}/LICENSE BUILD_DEPENDS= p5-Algorithm-Diff>=0:devel/p5-Algorithm-Diff \ + p5-Bio-FeatureIO>=0:biology/p5-Bio-FeatureIO \ p5-BioPerl>=1.007000:biology/p5-BioPerl \ p5-Config-Any>=0:devel/p5-Config-Any \ p5-File-Sort>=0:misc/p5-File-Sort \ diff --git a/biology/p5-BioPerl-Run/distinfo b/biology/p5-BioPerl-Run/distinfo index 2cc94d39027f..60e04988a375 100644 --- a/biology/p5-BioPerl-Run/distinfo +++ b/biology/p5-BioPerl-Run/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1482241323 -SHA256 (BioPerl-Run-1.007001.tar.gz) = 55fd632ff24af9b3b1ecf655906cd34c0460a48cb45faabc72dd327ee5e1b0cc -SIZE (BioPerl-Run-1.007001.tar.gz) = 14548613 +TIMESTAMP = 1505487295 +SHA256 (BioPerl-Run-1.007002.tar.gz) = 29806fc407183a936897d49d01d227877f52c946e3ed96c0675ed1ed14e1ce07 +SIZE (BioPerl-Run-1.007002.tar.gz) = 14493777 diff --git a/biology/p5-BioPerl-Run/pkg-plist b/biology/p5-BioPerl-Run/pkg-plist index 483cfc7a23ae..cb33191c5e2d 100644 --- a/biology/p5-BioPerl-Run/pkg-plist +++ b/biology/p5-BioPerl-Run/pkg-plist @@ -15,18 +15,14 @@ bin/bp_run_protdist %%SITE_PERL%%/Bio/DB/SoapEUtilities/LinkAdaptor.pm %%SITE_PERL%%/Bio/DB/SoapEUtilities/Result.pm %%SITE_PERL%%/Bio/Factory/EMBOSS.pm -%%SITE_PERL%%/Bio/Installer/Clustalw.pm %%SITE_PERL%%/Bio/Installer/EMBOSS.pm %%SITE_PERL%%/Bio/Installer/Generic.pm %%SITE_PERL%%/Bio/Installer/Hyphy.pm %%SITE_PERL%%/Bio/Installer/Muscle.pm -%%SITE_PERL%%/Bio/Installer/PAML.pm %%SITE_PERL%%/Bio/Installer/Probcons.pm %%SITE_PERL%%/Bio/Installer/SLR.pm -%%SITE_PERL%%/Bio/Installer/TCoffee.pm %%SITE_PERL%%/Bio/Tools/Run/Alignment/Amap.pm %%SITE_PERL%%/Bio/Tools/Run/Alignment/Blat.pm -%%SITE_PERL%%/Bio/Tools/Run/Alignment/Clustalw.pm %%SITE_PERL%%/Bio/Tools/Run/Alignment/DBA.pm %%SITE_PERL%%/Bio/Tools/Run/Alignment/Exonerate.pm %%SITE_PERL%%/Bio/Tools/Run/Alignment/Gmap.pm @@ -41,7 +37,6 @@ bin/bp_run_protdist %%SITE_PERL%%/Bio/Tools/Run/Alignment/Proda.pm %%SITE_PERL%%/Bio/Tools/Run/Alignment/Sim4.pm %%SITE_PERL%%/Bio/Tools/Run/Alignment/StandAloneFasta.pm -%%SITE_PERL%%/Bio/Tools/Run/Alignment/TCoffee.pm %%SITE_PERL%%/Bio/Tools/Run/Analysis.pm %%SITE_PERL%%/Bio/Tools/Run/Analysis/soap.pm %%SITE_PERL%%/Bio/Tools/Run/AnalysisFactory.pm @@ -90,10 +85,6 @@ bin/bp_run_protdist %%SITE_PERL%%/Bio/Tools/Run/Phylo/LVB.pm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Molphy/ProtML.pm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Njtree/Best.pm -%%SITE_PERL%%/Bio/Tools/Run/Phylo/PAML/Baseml.pm -%%SITE_PERL%%/Bio/Tools/Run/Phylo/PAML/Codeml.pm -%%SITE_PERL%%/Bio/Tools/Run/Phylo/PAML/Evolver.pm -%%SITE_PERL%%/Bio/Tools/Run/Phylo/PAML/Yn00.pm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Phast/PhastCons.pm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/Base.pm @@ -147,18 +138,14 @@ bin/bp_run_protdist %%PERL5_MAN3%%/Bio::DB::SoapEUtilities::LinkAdaptor.3.gz %%PERL5_MAN3%%/Bio::DB::SoapEUtilities::Result.3.gz %%PERL5_MAN3%%/Bio::Factory::EMBOSS.3.gz -%%PERL5_MAN3%%/Bio::Installer::Clustalw.3.gz %%PERL5_MAN3%%/Bio::Installer::EMBOSS.3.gz %%PERL5_MAN3%%/Bio::Installer::Generic.3.gz %%PERL5_MAN3%%/Bio::Installer::Hyphy.3.gz %%PERL5_MAN3%%/Bio::Installer::Muscle.3.gz -%%PERL5_MAN3%%/Bio::Installer::PAML.3.gz %%PERL5_MAN3%%/Bio::Installer::Probcons.3.gz %%PERL5_MAN3%%/Bio::Installer::SLR.3.gz -%%PERL5_MAN3%%/Bio::Installer::TCoffee.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Amap.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Blat.3.gz -%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Clustalw.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Alignment::DBA.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Exonerate.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Gmap.3.gz @@ -173,7 +160,6 @@ bin/bp_run_protdist %%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Proda.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Sim4.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Alignment::StandAloneFasta.3.gz -%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::TCoffee.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Analysis.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Analysis::soap.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::AnalysisFactory.3.gz @@ -221,10 +207,6 @@ bin/bp_run_protdist %%PERL5_MAN3%%/Bio::Tools::Run::Phylo::LVB.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Molphy::ProtML.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Njtree::Best.3.gz -%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::PAML::Baseml.3.gz -%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::PAML::Codeml.3.gz -%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::PAML::Evolver.3.gz -%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::PAML::Yn00.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phast::PhastCons.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phast::PhyloFit.3.gz %%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::Base.3.gz |