diff options
Diffstat (limited to 'math/petsc')
| -rw-r--r-- | math/petsc/Makefile | 303 | ||||
| -rw-r--r-- | math/petsc/distinfo | 2 | ||||
| -rw-r--r-- | math/petsc/files/patch-bmake__common__rules.shared.basic | 13 | ||||
| -rw-r--r-- | math/petsc/files/patch-config_configure.py | 11 | ||||
| -rw-r--r-- | math/petsc/files/patch-makefile | 40 | ||||
| -rw-r--r-- | math/petsc/files/patch-python_PETSc_packages_spooles.py | 12 | ||||
| -rw-r--r-- | math/petsc/files/patch-src__mat__impls__aij__seq__umfpack__umfpack.c | 34 | ||||
| -rw-r--r-- | math/petsc/files/patch-src__mat__impls__rowbs__mpi__mpirowbs.h | 13 | ||||
| -rw-r--r-- | math/petsc/files/pkg-message.in | 5 | ||||
| -rw-r--r-- | math/petsc/pkg-descr | 9 | ||||
| -rw-r--r-- | math/petsc/pkg-plist | 282 |
11 files changed, 0 insertions, 724 deletions
diff --git a/math/petsc/Makefile b/math/petsc/Makefile deleted file mode 100644 index 12aeede0a036..000000000000 --- a/math/petsc/Makefile +++ /dev/null @@ -1,303 +0,0 @@ -# Created by: Thierry Thomas <thierry@pompo.net> -# $FreeBSD$ - -PORTNAME= petsc -DISTVERSION= 2.3.3-p0 -PORTREVISION= 12 -PORTEPOCH= 1 -CATEGORIES= math parallel -MASTER_SITES= ftp://ftp.mcs.anl.gov/pub/petsc/release-snapshots/ - -MAINTAINER= ports@FreeBSD.org -COMMENT= Portable, Extensible Toolkit for Scientific computation - -BUILD_DEPENDS= python:${PORTSDIR}/lang/python -RUN_DEPENDS= python:${PORTSDIR}/lang/python \ - ksh:${PORTSDIR}/shells/pdksh \ - qsub:${PORTSDIR}/sysutils/torque - -HAS_CONFIGURE= yes -USE_PYTHON= yes -CONFIGURE_SCRIPT= config/configure.py -CONFIGURE_LOG= configure.log -CONFIGURE_ENV= PETSC_ARCH=${TARGET} \ - PETSC_DIR=${WRKSRC} -CONFIGURE_ARGS= --prefix=${PREFIX}/${PFX} --COPTFLAGS="${CFLAGS}" \ - --CXXOPTFLAGS="${CXXFLAGS}" --FOPTFLAGS="${FFLAGS}" \ - --with-shared=1 --with-cc=${CC} --with-fc=${FC} \ - --CPPFLAGS="-I${LOCALBASE}/include" \ - --LDFLAGS="${PTHREAD_LIBS} ${LDFLAGS}" -ALL_TARGET= all -MAKEFILE= makefile -MAKE_ENV= PETSC_DIR=${WRKSRC} - -SUB_FILES= pkg-message -SUB_LIST= PETSC_ARCH=${TARGET} PETSC_DIR=${PREFIX}/${PFX} -PKGMESSAGE= ${WRKDIR}/pkg-message - -.if !defined(WITHOUT_X11) -USE_XORG= x11 -CONFIGURE_ARGS+= --with-x-include=${LOCALBASE}/include \ - --with-x-lib=${LOCALBASE}/lib/libX11.so -.endif - -USES= fortran -FFLAGS+= -O2 -PFX= ${PORTNAME} -TARGET= ${OPSYS:tl} -PLIST_SUB= PFX=${PFX} TARGET=${TARGET} - -.if !defined(WITHOUT_UMFPACK) -UMFPACK_LIBS= umfpack.so,cholmod.so,colamd.so,amd.so,suitesparseconfig.so -L=${LOCALBASE}/lib/lib -LIB_DEPENDS+= libumfpack.so:${PORTSDIR}/math/suitesparse -CONFIGURE_ARGS+= --with-umfpack-include="${LOCALBASE}/include/suitesparse" \ - --with-umfpack-lib="[${UMFPACK_LIBS:C/^/${L}/:C/,/, ${L}/g}]" -.endif - -NO_STAGE= yes - -OPTIONS_DEFINE= DOCS - -.include <bsd.port.options.mk> - -.if ${PORT_OPTIONS:MDOCS} -PORTDOCS= * -#USE_TEX= latex:build -#BUILD_DEPENDS+= c2html:${PORTSDIR}/textproc/c2html \ -# doc2lt:${PORTSDIR}/textproc/sowing -.endif - -LIBSCALAPACK= ${LOCALBASE}/lib/libscalapack.a -LIBBLACS= ${LOCALBASE}/lib/libblacs.a -MPIDIR= ${LOCALBASE} - -.if exists(${LOCALBASE}/mpi/openmpi/bin/mpirun) -WITH_OPENMPI= yes -MPIDIR= ${LOCALBASE}/mpi/openmpi -.endif - -.if ${ARCH} == "amd64" -WITHOUT_SUPERLU= yes -.endif - -.if exists(${MPIDIR}/bin/mpicc) && !defined(WITHOUT_MPI) -WITH_MPI= yes -.endif -.if defined(WITH_MPI) -. if exists(${LOCALBASE}/bin/lamboot) -BROKEN= Cannot build with MPI when lam-7 is installed - set WITHOUT_MPI or deinstall net/lam -. endif -.if defined(WITH_OPENMPI) -MPIDIR= ${LOCALBASE}/mpi/openmpi -BUILD_DEPENDS+= ${MPIDIR}/lib/libmpi.so:${PORTSDIR}/net/openmpi -RUN_DEPENDS+= ${MPIDIR}/lib/libmpi.so:${PORTSDIR}/net/openmpi -PKGNAMESUFFIX+= -openmpi -MAKE_ENV+= PATH=${MPIDIR}/bin:${PATH} -# math/blocksolve95 does not pass regression test when compiled with OpenMPI. -WITHOUT_BS95= yes -WITHOUT_SPOOLES= yes -WITHOUT_PARMETIS= yes -CONFIGURE_ARGS+= --with-cc=${MPIDIR}/bin/mpicc --with-fc=${MPIDIR}/bin/mpif77 -.else -BUILD_DEPENDS+= ${LOCALBASE}/bin/mpicc:${PORTSDIR}/net/mpich2 -RUN_DEPENDS+= ${LOCALBASE}/bin/mpirun:${PORTSDIR}/net/mpich2 -PKGNAMESUFFIX+= -mpich -WITHOUT_SPOOLES= yes -.endif - -CONFIGURE_ARGS+= --with-mpi-dir=${MPIDIR} -CONFLICTS= petsc-2* -PLIST_SUB+= MPIUNI="@comment " -.else -CONFIGURE_ARGS+= --with-mpi=0 -CONFLICTS= petsc-mpich-2* -WITHOUT_BS95= yes -WITHOUT_PARMETIS= yes -WITHOUT_SPOOLES= yes -WITHOUT_SUPERLU= yes -PLIST_SUB+= MPIUNI="" -.endif - -.if exists(${LOCALBASE}/lib/libatlas.so) && !defined(WITH_BLAS) -WITH_ATLAS= yes -.endif -.if defined(WITH_ATLAS) -LIB_DEPENDS+= libatlas.so:${PORTSDIR}/math/atlas -LIBBLASLAPACK= -L${LOCALBASE}/lib -lalapack -lcblas -lf77blas -CONFIGURE_ARGS+= --with-blas-lapack-lib="${LIBBLASLAPACK}" -.else -LIB_DEPENDS+= liblapack.so:${PORTSDIR}/math/lapack -LIBBLASLAPACK= -L${LOCALBASE}/lib -llapack -lblas -CONFIGURE_ARGS+= --with-blas-lapack-lib="${LIBBLASLAPACK}" -.endif - -.if !defined(WITHOUT_SUPERLU) && !defined(WITHOUT_BLASLAPACK) -BUILD_DEPENDS+= ${LOCALBASE}/lib/libsuperlu.a:${PORTSDIR}/math/superlu -CONFIGURE_ARGS+= --with-superlu-include=${LOCALBASE}/include/superlu \ - --with-superlu-lib=${LOCALBASE}/lib/libsuperlu.a -.endif - -.if defined(WITHOUT_BS95) -CONFIGURE_ARGS+= --with-blocksolve95=0 -.else -BUILD_DEPENDS+= ${LOCALBASE}/lib/libBS95.a:${PORTSDIR}/math/blocksolve95 -CONFIGURE_ARGS+= --with-blocksolve95-include=${LOCALBASE}/include \ - --with-blocksolve95-lib=${LOCALBASE}/lib/libBS95.a -.endif - -.if defined(WITHOUT_PARMETIS) || exists(${LOCALBASE}/lib/libmetis.so) -# parmetis cannot be built with suitesparse -CONFIGURE_ARGS+= --with-parmetis=0 -.else -BUILD_DEPENDS+= ${LOCALBASE}/lib/parmetis/libparmetis.a:${PORTSDIR}/math/parmetis -CONFIGURE_ARGS+= --with-parmetis=1 \ - --with-parmetis-include=${LOCALBASE}/include/parmetis \ - --with-parmetis-lib=[${LOCALBASE}/lib/parmetis/libparmetis.a,${LOCALBASE}/lib/parmetis/libmetis.a] -CONFLICTS+= metis-4* -.endif - -.if exists(${LIBBLACS}) -WITH_BLACS= yes -.endif -.if defined(WITH_BLACS) && defined(WITH_MPI) -LIB_DEPENDS+= libblacs.so:${PORTSDIR}/math/blacs -CONFIGURE_ARGS+= --with_blacs=1 \ - --with-blacs-include=${LOCALBASE}/include \ - --with-blacs-lib=[${LOCALBASE}/lib/libblacsc.a,${LOCALBASE}/lib/libblacsf77.a,${LOCALBASE}/lib/libblacs.a] -. if exists(${LIBSCALAPACK}) && defined(WITH_MPI) -WITH_SCALAPACK= yes -. endif -. if defined(WITH_SCALAPACK) -LIB_DEPENDS+= libscalapack.so:${PORTSDIR}/math/scalapack -CONFIGURE_ARGS+= --with-scalapack=1 \ - --with-scalapack-dir=${LOCALBASE} -. endif -.endif - -#.if exists(${LOCALBASE}/bin/lgrind) -#WITH_LGRIND= yes -#.endif -#.if defined(WITH_LGRIND) -#BUILD_DEPENDS+= lgrind:${PORTSDIR}/print/lgrind -#RUN_DEPENDS+= lgrind:${PORTSDIR}/print/lgrind -#.endif - -.if exists(${LOCALBASE}/lib/libnetcdf.so) -WITH_NETCDF= yes -.endif -.if defined(WITH_NETCDF) -LIB_DEPENDS+= libnetcdf.so:${PORTSDIR}/science/netcdf -CONFIGURE_ENV+= PNETCDF_INCLUDE=${LOCALBASE}/include \ - PNETCDF_LIB=${LOCALBASE}/lib -.endif - -.if exists(${LOCALBASE}/bin/svn) -WITH_SVN= yes -.endif -.if defined(WITH_SVN) -BUILD_DEPENDS+= svn:${PORTSDIR}/devel/subversion -RUN_DEPENDS+= svn:${PORTSDIR}/devel/subversion -.endif - -#.if exists(${LOCALBASE}/bin/valgrind) -#WITH_VALGRIND= yes -#.endif -#.if defined(WITH_VALGRIND) -#BUILD_DEPENDS+= valgrind:${PORTSDIR}/devel/valgrind -#RUN_DEPENDS+= valgrind:${PORTSDIR}/devel/valgrind -#.endif - -.if !defined(WITHOUT_SPOOLES) -. if exists(${LOCALBASE}/lib/libspooles.a) \ - && !exists(${LOCALBASE}/include/spooles/MPI/spoolesMPI.h) -BROKEN= Please deinstall spooles and reinstall spooles-mpich -. else -BUILD_DEPENDS+= ${LOCALBASE}/lib/libspooles.a:${PORTSDIR}/math/spooles-mpich -. endif -CONFIGURE_ARGS+= --with-spooles-include=${LOCALBASE}/include/spooles \ - --with-spooles-lib=[${LOCALBASE}/lib/libspooles.a,${LIBDIR}/libm.a] -.endif - -pre-everything:: - @${ECHO_MSG} -.if !defined (WITH_MPI) - @${ECHO_MSG} "Define WITH_MPI to use MPI." - @${ECHO_MSG} "Note: this is not compatible with Python bindings!" -.elif !defined (WITHOUT_MPI) - @${ECHO_MSG} "Define WITHOUT_MPI to not use MPI." -.endif -.if !defined (WITH_SVN) - @${ECHO_MSG} "Define WITH_SVN to use subversion." -.endif -.if !defined (WITHOUT_X11) - @${ECHO_MSG} "Define WITHOUT_X11 to remove X11 support." -.endif -.if !defined (WITH_ATLAS) - @${ECHO_MSG} "Define WITH_ATLAS to replace Blas / Lapack support by Atlas." -.endif -.if !defined (WITHOUT_BS95) - @${ECHO_MSG} "Define WITHOUT_BS95 to remove BlockSolve95 support." -.endif -.if !defined (WITHOUT_PARMETIS) - @${ECHO_MSG} "Define WITHOUT_PARMETIS to remove ParMETIS support." -.endif -.if !defined (WITHOUT_SPOOLES) - @${ECHO_MSG} "Define WITHOUT_SPOOLES to remove SPOOLES support." -.endif -#.if !defined (WITHOUT_SUPERLU) -# @${ECHO_MSG} "Define WITHOUT_SUPERLU to remove SuperLU support." -#.endif -.if !defined (WITHOUT_UMFPACK) - @${ECHO_MSG} "Define WITHOUT_UMFPACK to remove UMFPACK support." -.endif - @${ECHO_MSG} - -pre-configure: - @${RM} ${WRKSRC}/bmake/common/rules.shared.basic.orig - ${REINPLACE_CMD} -e "s|AMD/Include|include/AMD|" \ - -e "s|AMD/Lib|${LOCALBASE}/lib|" \ - ${WRKSRC}/python/PETSc/packages/UMFPACK.py - ${REINPLACE_CMD} -e "s|/bin/ksh|${LOCALBASE}/bin/ksh|" \ - ${WRKSRC}/bin/popup - @${RM} ${WRKSRC}/bin/popup.bak -.if defined (WITH_MPI) -. for ps in ml.py MPE.py - ${REINPLACE_CMD} -e "s|-lpmpich|-lmpl|" \ - ${WRKSRC}/python/PETSc/packages/${ps} -. endfor - ${REINPLACE_CMD} -e "s|libpmpich|libmpl|" \ - ${WRKSRC}/python/BuildSystem/config/packages/MPI.py -.endif - -post-install: - ${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/${PFX}/bin - ${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/${PFX}/bin - ${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/${PFX}/bmake - ${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/${PFX}/bmake -.if ${PORT_OPTIONS:MDOCS} - (cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} \ - ${MAKEFILE} ${MAKE_ARGS} install_docs) -.endif - @${ECHO_MSG} - @${CAT} ${PKGMESSAGE} - @${ECHO_MSG} - -.if defined(MAINTAINER_MODE) -regression-test: -. if defined (WITH_MPI) && !defined(WITH_OPENMPI) -. if !exists(${HOME}/.mpd.conf) - @${ECHO_CMD} "MPD_SECRETWORD=change_on_install" > ${HOME}/.mpd.conf - ${CHMOD} go-r ${HOME}/.mpd.conf - @${ECHO_MSG} "${HOME}/.mpd.conf has been generated - please change the secret word!" -. endif - ${LOCALBASE}/bin/mpd & -. endif - (cd ${BUILD_WRKSRC}; \ - ${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} test) -. if defined (WITH_MPI) && !defined(WITH_OPENMPI) - ${LOCALBASE}/bin/mpdallexit -. endif -.endif - -.include <bsd.port.mk> diff --git a/math/petsc/distinfo b/math/petsc/distinfo deleted file mode 100644 index f0222a42bfc1..000000000000 --- a/math/petsc/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -SHA256 (petsc-2.3.3-p0.tar.gz) = a08d0f2022349321a26ae6c63f0ad5b069d37f48028377c549b81cc3e7b97ddf -SIZE (petsc-2.3.3-p0.tar.gz) = 10966078 diff --git a/math/petsc/files/patch-bmake__common__rules.shared.basic b/math/petsc/files/patch-bmake__common__rules.shared.basic deleted file mode 100644 index f64f611487b7..000000000000 --- a/math/petsc/files/patch-bmake__common__rules.shared.basic +++ /dev/null @@ -1,13 +0,0 @@ ---- bmake/common/rules.shared.basic.orig 2007-05-23 19:30:02.000000000 -0400 -+++ bmake/common/rules.shared.basic 2012-06-15 00:43:31.000000000 -0400 -@@ -10,6 +10,10 @@ - shared_solaris2: shared_solaris - shared_solaris2_gnu: shared_solaris_gnu - -+shared_freebsd10: shared_freebsd -+shared_freebsd9: shared_freebsd -+shared_freebsd8: shared_freebsd -+shared_freebsd7: shared_freebsd - shared_freebsd6: shared_freebsd - shared_freebsd5: shared_freebsd - shared_freebsd4: shared_freebsd diff --git a/math/petsc/files/patch-config_configure.py b/math/petsc/files/patch-config_configure.py deleted file mode 100644 index e5be99315905..000000000000 --- a/math/petsc/files/patch-config_configure.py +++ /dev/null @@ -1,11 +0,0 @@ ---- ./config/configure.py.orig Sat Sep 2 02:24:13 2006 -+++ ./config/configure.py Sat Sep 2 23:23:33 2006 -@@ -97,7 +97,7 @@ - print ' *** Do not run configure as root, or using sudo. ***' - print ' ***** That should be reserved for installation *****' - print '=================================================================================' -- sys.exit(3) -+ #sys.exit(3) - - # Check for broken cygwin - if chkcygwin(): diff --git a/math/petsc/files/patch-makefile b/math/petsc/files/patch-makefile deleted file mode 100644 index 22d6f88e3d34..000000000000 --- a/math/petsc/files/patch-makefile +++ /dev/null @@ -1,40 +0,0 @@ ---- makefile.orig Sat Sep 2 03:57:37 2006 -+++ makefile Sat Sep 2 23:20:34 2006 -@@ -6,6 +6,7 @@ - ALL: all - LOCDIR = ./ - DIRS = src include -+DOCS_DIR = ${INSTALL_DIR}/../share/doc/petsc - CFLAGS = - FFLAGS = - -@@ -21,7 +22,7 @@ - echo " Do not run configure as root, or using sudo.";\ - echo " That should be reserved for installation";\ - echo "********************************************************************"; \ -- exit 1; fi -+ fi - @${OMAKE} PETSC_ARCH=${PETSC_ARCH} chkpetsc_dir - -@${OMAKE} all_build 2>&1 | tee make_log_${PETSC_ARCH} - -@egrep -i "( error | error:)" make_log_${PETSC_ARCH} > /dev/null; if [ "$$?" = "0" ]; then \ -@@ -261,14 +262,14 @@ - -@if [ "${INSTALL_DIR}" = "${PETSC_DIR}" ]; then \ - echo "You did not set a directory to install to";\ - else \ -- echo Installing PETSc documentation at ${INSTALL_DIR};\ -- if [ ! -d `dirname ${INSTALL_DIR}` ]; then \ -- ${MKDIR} `dirname ${INSTALL_DIR}` ; \ -+ echo Installing PETSc documentation at ${DOCS_DIR};\ -+ if [ ! -d `dirname ${DOCS_DIR}` ]; then \ -+ ${MKDIR} `dirname ${DOCS_DIR}` ; \ - fi;\ -- if [ ! -d ${INSTALL_DIR} ]; then \ -- ${MKDIR} ${INSTALL_DIR} ; \ -+ if [ ! -d ${DOCS_DIR} ]; then \ -+ ${MKDIR} ${DOCS_DIR} ; \ - fi;\ -- cp -fr docs ${INSTALL_DIR};\ -+ cp -fr docs/* ${DOCS_DIR};\ - ${RM} -fr docs/tex;\ - fi; - # ------------------------------------------------------------------ diff --git a/math/petsc/files/patch-python_PETSc_packages_spooles.py b/math/petsc/files/patch-python_PETSc_packages_spooles.py deleted file mode 100644 index 9184ce43136b..000000000000 --- a/math/petsc/files/patch-python_PETSc_packages_spooles.py +++ /dev/null @@ -1,12 +0,0 @@ ---- ./python/PETSc/packages/spooles.py.orig Thu Aug 11 01:08:42 2005 -+++ ./python/PETSc/packages/spooles.py Sun Aug 21 23:04:09 2005 -@@ -11,7 +11,8 @@ - self.download = ['ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/spooles-2.2.tar.gz'] - self.functions = ['InpMtx_init'] - self.includes = ['MPI/spoolesMPI.h'] -- self.liblist = [[os.path.join('MPI','src','spoolesMPI.a'),'spooles.a']] -+ # FreeBSD: MPI is included in our spooles.a -+ # self.liblist = [[os.path.join('MPI','src','spoolesMPI.a'),'spooles.a']] - self.libdir = '' - self.includedir = '' - return diff --git a/math/petsc/files/patch-src__mat__impls__aij__seq__umfpack__umfpack.c b/math/petsc/files/patch-src__mat__impls__aij__seq__umfpack__umfpack.c deleted file mode 100644 index 030e253cb259..000000000000 --- a/math/petsc/files/patch-src__mat__impls__aij__seq__umfpack__umfpack.c +++ /dev/null @@ -1,34 +0,0 @@ ---- src/mat/impls/aij/seq/umfpack/umfpack.c.orig 2013-03-30 09:30:52.000000000 -0400 -+++ src/mat/impls/aij/seq/umfpack/umfpack.c 2013-03-30 09:32:20.000000000 -0400 -@@ -153,7 +153,7 @@ - PetscErrorCode ierr; - int m=A->rmap.n,n=A->cmap.n,*ai=mat->i,*aj=mat->j,status,*ra,idx; - PetscScalar *av=mat->a; -- const char *strategy[]={"AUTO","UNSYMMETRIC","SYMMETRIC","2BY2"}, -+ const char *strategy[]={"AUTO","UNSYMMETRIC","SYMMETRIC"}, - *scale[]={"NONE","SUM","MAX"}; - PetscTruth flg; - -@@ -189,14 +189,12 @@ - case 0: lu->Control[UMFPACK_STRATEGY] = UMFPACK_STRATEGY_AUTO; break; - case 1: lu->Control[UMFPACK_STRATEGY] = UMFPACK_STRATEGY_UNSYMMETRIC; break; - case 2: lu->Control[UMFPACK_STRATEGY] = UMFPACK_STRATEGY_SYMMETRIC; break; -- case 3: lu->Control[UMFPACK_STRATEGY] = UMFPACK_STRATEGY_2BY2; break; - } - } - ierr = PetscOptionsReal("-mat_umfpack_dense_col","Control[UMFPACK_DENSE_COL]","None",lu->Control[UMFPACK_DENSE_COL],&lu->Control[UMFPACK_DENSE_COL],PETSC_NULL);CHKERRQ(ierr); - ierr = PetscOptionsReal("-mat_umfpack_dense_row","Control[UMFPACK_DENSE_ROW]","None",lu->Control[UMFPACK_DENSE_ROW],&lu->Control[UMFPACK_DENSE_ROW],PETSC_NULL);CHKERRQ(ierr); - ierr = PetscOptionsReal("-mat_umfpack_amd_dense","Control[UMFPACK_AMD_DENSE]","None",lu->Control[UMFPACK_AMD_DENSE],&lu->Control[UMFPACK_AMD_DENSE],PETSC_NULL);CHKERRQ(ierr); - ierr = PetscOptionsReal("-mat_umfpack_block_size","Control[UMFPACK_BLOCK_SIZE]","None",lu->Control[UMFPACK_BLOCK_SIZE],&lu->Control[UMFPACK_BLOCK_SIZE],PETSC_NULL);CHKERRQ(ierr); -- ierr = PetscOptionsReal("-mat_umfpack_2by2_tolerance","Control[UMFPACK_2BY2_TOLERANCE]","None",lu->Control[UMFPACK_2BY2_TOLERANCE],&lu->Control[UMFPACK_2BY2_TOLERANCE],PETSC_NULL);CHKERRQ(ierr); - ierr = PetscOptionsReal("-mat_umfpack_fixq","Control[UMFPACK_FIXQ]","None",lu->Control[UMFPACK_FIXQ],&lu->Control[UMFPACK_FIXQ],PETSC_NULL);CHKERRQ(ierr); - ierr = PetscOptionsReal("-mat_umfpack_aggressive","Control[UMFPACK_AGGRESSIVE]","None",lu->Control[UMFPACK_AGGRESSIVE],&lu->Control[UMFPACK_AGGRESSIVE],PETSC_NULL);CHKERRQ(ierr); - -@@ -291,7 +289,6 @@ - ierr = PetscViewerASCIIPrintf(viewer," Control[UMFPACK_DENSE_ROW]: %g\n",lu->Control[UMFPACK_DENSE_ROW]);CHKERRQ(ierr); - ierr = PetscViewerASCIIPrintf(viewer," Control[UMFPACK_AMD_DENSE]: %g\n",lu->Control[UMFPACK_AMD_DENSE]);CHKERRQ(ierr); - ierr = PetscViewerASCIIPrintf(viewer," Control[UMFPACK_BLOCK_SIZE]: %g\n",lu->Control[UMFPACK_BLOCK_SIZE]);CHKERRQ(ierr); -- ierr = PetscViewerASCIIPrintf(viewer," Control[UMFPACK_2BY2_TOLERANCE]: %g\n",lu->Control[UMFPACK_2BY2_TOLERANCE]);CHKERRQ(ierr); - ierr = PetscViewerASCIIPrintf(viewer," Control[UMFPACK_FIXQ]: %g\n",lu->Control[UMFPACK_FIXQ]);CHKERRQ(ierr); - ierr = PetscViewerASCIIPrintf(viewer," Control[UMFPACK_AGGRESSIVE]: %g\n",lu->Control[UMFPACK_AGGRESSIVE]);CHKERRQ(ierr); - diff --git a/math/petsc/files/patch-src__mat__impls__rowbs__mpi__mpirowbs.h b/math/petsc/files/patch-src__mat__impls__rowbs__mpi__mpirowbs.h deleted file mode 100644 index 4deb3db1d37b..000000000000 --- a/math/petsc/files/patch-src__mat__impls__rowbs__mpi__mpirowbs.h +++ /dev/null @@ -1,13 +0,0 @@ ---- src/mat/impls/rowbs/mpi/mpirowbs.h.orig Sat Oct 2 09:13:29 2004 -+++ src/mat/impls/rowbs/mpi/mpirowbs.h Tue Oct 5 21:58:07 2004 -@@ -5,8 +5,8 @@ - #include "src/mat/matimpl.h" - - EXTERN_C_BEGIN --#include "BSsparse.h" --#include "BSprivate.h" -+#include <BSsparse.h> -+#include <BSprivate.h> - EXTERN_C_END - - /* diff --git a/math/petsc/files/pkg-message.in b/math/petsc/files/pkg-message.in deleted file mode 100644 index 9e26616e140e..000000000000 --- a/math/petsc/files/pkg-message.in +++ /dev/null @@ -1,5 +0,0 @@ -=================================================== -Before using PETSc, you'll have to set PETSC_DIR to -%%PETSC_DIR%% -and eventually PETSC_ARCH to %%PETSC_ARCH%%. -=================================================== diff --git a/math/petsc/pkg-descr b/math/petsc/pkg-descr deleted file mode 100644 index 7206a4e3e40d..000000000000 --- a/math/petsc/pkg-descr +++ /dev/null @@ -1,9 +0,0 @@ -PETSc, the Portable, Extensible Toolkit for Scientific computation, provides -sets of tools for the parallel (as well as serial), numerical solution of PDEs -that require solving large-scale, sparse nonlinear systems of equations. PETSc -includes nonlinear and linear equation solvers that employ a variety of Newton -techniques and Krylov subspace methods. PETSc provides several parallel sparse -matrix formats, including compressed row, block compressed row, and block -diagonal storage. - -WWW: http://www.mcs.anl.gov/petsc/ diff --git a/math/petsc/pkg-plist b/math/petsc/pkg-plist deleted file mode 100644 index 8b803a9670a2..000000000000 --- a/math/petsc/pkg-plist +++ /dev/null @@ -1,282 +0,0 @@ -%%PFX%%/bin/TOPSGenerator.py -%%PFX%%/bin/TOPSGenerator.pyc -%%PFX%%/bin/TOPSGenerator.pyo -%%PFX%%/bin/TOPSInstaller.py -%%PFX%%/bin/TOPSInstaller.pyc -%%PFX%%/bin/TOPSInstaller.pyo -%%PFX%%/bin/adiforfix.py -%%PFX%%/bin/adiforfix.pyc -%%PFX%%/bin/adiforfix.pyo -%%PFX%%/bin/adprocess.py -%%PFX%%/bin/adprocess.pyc -%%PFX%%/bin/adprocess.pyo -%%PFX%%/bin/chibaoutput -%%PFX%%/bin/config/acconfig.h -%%PFX%%/bin/config/aclocal.m4 -%%PFX%%/bin/config/config.guess -%%PFX%%/bin/config/config.sub -%%PFX%%/bin/config/findftnlibs -%%PFX%%/bin/config/install-sh -%%PFX%%/bin/configarch -%%PFX%%/bin/hostnames.chiba -%%PFX%%/bin/matlab/@freader/close.m 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