diff options
Diffstat (limited to 'math')
| -rw-r--r-- | math/R-letter/Makefile | 41 | ||||
| -rw-r--r-- | math/R-letter/distinfo | 4 | ||||
| -rw-r--r-- | math/R-letter/pkg-plist | 4322 | ||||
| -rw-r--r-- | math/R-project/Makefile | 41 | ||||
| -rw-r--r-- | math/R-project/distinfo | 4 | ||||
| -rw-r--r-- | math/R-project/pkg-plist | 4322 | ||||
| -rw-r--r-- | math/R/Makefile | 41 | ||||
| -rw-r--r-- | math/R/distinfo | 4 | ||||
| -rw-r--r-- | math/R/pkg-plist | 4322 |
9 files changed, 6750 insertions, 6351 deletions
diff --git a/math/R-letter/Makefile b/math/R-letter/Makefile index 84503ef49bc4..d6354d088c45 100644 --- a/math/R-letter/Makefile +++ b/math/R-letter/Makefile @@ -1,5 +1,5 @@ # ex: ts=8 sts=0 noet -# New ports collection makefile for: R (letter) +# New ports collection makefile for: R # Date created: Fri Feb 9 10:50:25 EST 2001 # Whom: Maurice Castro <maurice@serc.rmit.edu.au> # @@ -7,7 +7,7 @@ # PORTNAME= R -PORTVERSION= 1.8.1 +PORTVERSION= 1.9.0 CATEGORIES= math MASTER_SITES= http://cran.r-project.org/src/base/ \ ftp://cran.r-project.org/pub/R/src/base/ \ @@ -27,14 +27,11 @@ MASTER_SITES= http://cran.r-project.org/src/base/ \ http://probability.ca/cran/src/base/ \ http://www.ibiblio.org/pub/languages/R/CRAN/src/base/ \ http://www.bioconductor.org/CRAN/src/base/ -PKGNAMESUFFIX= -${PAPERSIZE} EXTRACT_SUFX= .tgz MAINTAINER= vangyzen@stat.duke.edu COMMENT= A language for statistical computing and graphics -CONFLICTS?= R-a4-* - LIB_DEPENDS= tcl84:${PORTSDIR}/lang/tcl84 \ tk84:${PORTSDIR}/x11-toolkits/tk84 \ jpeg.9:${PORTSDIR}/graphics/jpeg \ @@ -49,29 +46,39 @@ LIB_DEPENDS+= lapack.3:${PORTSDIR}/math/lapack CONFIGURE_ARGS= --with-lapack="-llapack" --with-blas="-lblas" .endif +MAN1= R.1 + GNU_CONFIGURE= yes USE_XLIB= yes USE_PERL5= yes -CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} FFLAGS="${FFLAGS}" \ +CONFIGURE_ENV= FFLAGS="${FFLAGS}" \ INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" -CONFIGURE_ARGS+=--enable-R-shlib - -PAPERSIZE?= letter -.if ${PAPERSIZE} != letter && ${PAPERSIZE} != a4 -.BEGIN: - @${ECHO} "Invalid value for PAPERSIZE: \"${PAPERSIZE}\"" - @${ECHO} "Possible values are: a4 letter" - @${FALSE} -.endif +CONFIGURE_ARGS+=--enable-R-shlib --with-bzlib --with-pcre --with-zlib -MAN1= R.1 +# NB: R 1.9.0 requires zlib 1.2.1, but the system zlib is currently +# only 1.1.4. Thus, R compiles its own bundled version of zlib +# despite configuring with --with-zlib. .include <bsd.port.pre.mk> +pre-fetch: +.if !defined(PAPERSIZE) + @${ECHO} + @${ECHO} " The default paper size for printing from R is A4." + @${ECHO} " You can change it by setting the PAPERSIZE" + @${ECHO} " make variable to one of:" + @${ECHO} " a4 letter legal executive" + @${ECHO} " For example:" + @${ECHO} " # make PAPERSIZE=letter install clean" + @${ECHO} +.else +CONFIGURE_ENV+= R_PAPERSIZE=${PAPERSIZE} +.endif + # Build the four documentation formats sequentially (instead of simultaneously) # to prevent perl 5.8 from using too much memory (> 512 MB) and being killed. .if ${PERL_LEVEL} >= 500800 -ALL_TARGET= Makefile Makeconf R help html latex examples stamp-recommended +ALL_TARGET= Makefile Makeconf R help html latex examples docs stamp-recommended .endif test check: build diff --git a/math/R-letter/distinfo b/math/R-letter/distinfo index b23f198df043..fda50e0b4072 100644 --- a/math/R-letter/distinfo +++ b/math/R-letter/distinfo @@ -1,2 +1,2 @@ -MD5 (R-1.8.1.tgz) = cd81fdeaf22f93dfc28979e8132722ec -SIZE (R-1.8.1.tgz) = 9407628 +MD5 (R-1.9.0.tgz) = 79ae9d20a7bed94d7c92504c8c130310 +SIZE (R-1.9.0.tgz) = 9505598 diff --git a/math/R-letter/pkg-plist b/math/R-letter/pkg-plist index 763fa0845b9e..0a5d91ac51b7 100644 --- a/math/R-letter/pkg-plist +++ b/math/R-letter/pkg-plist @@ -40,6 +40,8 @@ lib/R/afm/c059013l.afm lib/R/afm/c059016l.afm lib/R/afm/c059033l.afm lib/R/afm/c059036l.afm +lib/R/afm/cmbxti10.afm +lib/R/afm/cmti10.afm lib/R/afm/cob_____.afm lib/R/afm/cobo____.afm lib/R/afm/com_____.afm @@ -186,6 +188,7 @@ lib/R/library/KernSmooth/DESCRIPTION lib/R/library/KernSmooth/INDEX lib/R/library/KernSmooth/Meta/Rd.rds lib/R/library/KernSmooth/Meta/hsearch.rds +lib/R/library/KernSmooth/Meta/nsInfo.rds lib/R/library/KernSmooth/NAMESPACE lib/R/library/KernSmooth/R-ex/bkde.R lib/R/library/KernSmooth/R-ex/bkde2D.R @@ -227,6 +230,7 @@ lib/R/library/MASS/LICENCE lib/R/library/MASS/Meta/Rd.rds lib/R/library/MASS/Meta/data.rds lib/R/library/MASS/Meta/hsearch.rds +lib/R/library/MASS/Meta/nsInfo.rds lib/R/library/MASS/NAMESPACE lib/R/library/MASS/R-ex/Insurance.R lib/R/library/MASS/R-ex/Null.R @@ -247,6 +251,7 @@ lib/R/library/MASS/R-ex/cement.R lib/R/library/MASS/R-ex/confint.R lib/R/library/MASS/R-ex/contr.sdif.R lib/R/library/MASS/R-ex/corresp.R +lib/R/library/MASS/R-ex/cov.rob.R lib/R/library/MASS/R-ex/cov.trob.R lib/R/library/MASS/R-ex/denumerate.R lib/R/library/MASS/R-ex/dose.p.R @@ -274,6 +279,7 @@ lib/R/library/MASS/R-ex/leuk.R lib/R/library/MASS/R-ex/lm.ridge.R lib/R/library/MASS/R-ex/loglm.R lib/R/library/MASS/R-ex/logtrans.R +lib/R/library/MASS/R-ex/lqs.R lib/R/library/MASS/R-ex/mca.R lib/R/library/MASS/R-ex/menarche.R lib/R/library/MASS/R-ex/motors.R @@ -288,6 +294,7 @@ lib/R/library/MASS/R-ex/petrol.R lib/R/library/MASS/R-ex/plot.mca.R lib/R/library/MASS/R-ex/polr.R lib/R/library/MASS/R-ex/predict.lda.R +lib/R/library/MASS/R-ex/predict.lqs.R lib/R/library/MASS/R-ex/predict.qda.R lib/R/library/MASS/R-ex/qda.R lib/R/library/MASS/R-ex/rational.R @@ -451,6 +458,7 @@ lib/R/library/MASS/help/confint lib/R/library/MASS/help/contr.sdif lib/R/library/MASS/help/coop lib/R/library/MASS/help/corresp +lib/R/library/MASS/help/cov.rob lib/R/library/MASS/help/cov.trob lib/R/library/MASS/help/cpus lib/R/library/MASS/help/crabs @@ -495,6 +503,7 @@ lib/R/library/MASS/help/lm.ridge lib/R/library/MASS/help/loglm lib/R/library/MASS/help/loglm1 lib/R/library/MASS/help/logtrans +lib/R/library/MASS/help/lqs lib/R/library/MASS/help/mammals lib/R/library/MASS/help/mca lib/R/library/MASS/help/mcycle @@ -520,6 +529,7 @@ lib/R/library/MASS/help/plot.lda lib/R/library/MASS/help/plot.mca lib/R/library/MASS/help/polr lib/R/library/MASS/help/predict.lda +lib/R/library/MASS/help/predict.lqs lib/R/library/MASS/help/predict.mca lib/R/library/MASS/help/predict.qda lib/R/library/MASS/help/qda @@ -608,6 +618,7 @@ lib/R/library/MASS/html/confint.html lib/R/library/MASS/html/contr.sdif.html lib/R/library/MASS/html/coop.html lib/R/library/MASS/html/corresp.html +lib/R/library/MASS/html/cov.rob.html lib/R/library/MASS/html/cov.trob.html lib/R/library/MASS/html/cpus.html lib/R/library/MASS/html/crabs.html @@ -652,6 +663,7 @@ lib/R/library/MASS/html/lm.ridge.html lib/R/library/MASS/html/loglm.html lib/R/library/MASS/html/loglm1.html lib/R/library/MASS/html/logtrans.html +lib/R/library/MASS/html/lqs.html lib/R/library/MASS/html/mammals.html lib/R/library/MASS/html/mca.html lib/R/library/MASS/html/mcycle.html @@ -677,6 +689,7 @@ lib/R/library/MASS/html/plot.lda.html lib/R/library/MASS/html/plot.mca.html lib/R/library/MASS/html/polr.html lib/R/library/MASS/html/predict.lda.html +lib/R/library/MASS/html/predict.lqs.html lib/R/library/MASS/html/predict.mca.html lib/R/library/MASS/html/predict.qda.html lib/R/library/MASS/html/qda.html @@ -764,6 +777,7 @@ lib/R/library/MASS/latex/confint.tex lib/R/library/MASS/latex/contr.sdif.tex lib/R/library/MASS/latex/coop.tex lib/R/library/MASS/latex/corresp.tex +lib/R/library/MASS/latex/cov.rob.tex lib/R/library/MASS/latex/cov.trob.tex lib/R/library/MASS/latex/cpus.tex lib/R/library/MASS/latex/crabs.tex @@ -808,6 +822,7 @@ lib/R/library/MASS/latex/lm.ridge.tex lib/R/library/MASS/latex/loglm.tex lib/R/library/MASS/latex/loglm1.tex lib/R/library/MASS/latex/logtrans.tex +lib/R/library/MASS/latex/lqs.tex lib/R/library/MASS/latex/mammals.tex lib/R/library/MASS/latex/mca.tex lib/R/library/MASS/latex/mcycle.tex @@ -833,6 +848,7 @@ lib/R/library/MASS/latex/plot.lda.tex lib/R/library/MASS/latex/plot.mca.tex lib/R/library/MASS/latex/polr.tex lib/R/library/MASS/latex/predict.lda.tex +lib/R/library/MASS/latex/predict.lqs.tex lib/R/library/MASS/latex/predict.mca.tex lib/R/library/MASS/latex/predict.qda.tex lib/R/library/MASS/latex/qda.tex @@ -913,288 +929,177 @@ lib/R/library/base/Meta/Rd.rds lib/R/library/base/Meta/data.rds lib/R/library/base/Meta/demo.rds lib/R/library/base/Meta/hsearch.rds -lib/R/library/base/R-ex/AIC.R lib/R/library/base/R-ex/Arithmetic.R lib/R/library/base/R-ex/Bessel.R -lib/R/library/base/R-ex/Beta.R -lib/R/library/base/R-ex/Binomial.R -lib/R/library/base/R-ex/Cauchy.R -lib/R/library/base/R-ex/Chisquare.R lib/R/library/base/R-ex/Comparison.R lib/R/library/base/R-ex/Constants.R lib/R/library/base/R-ex/Control.R lib/R/library/base/R-ex/DateTimeClasses.R -lib/R/library/base/R-ex/Devices.R -lib/R/library/base/R-ex/Exponential.R +lib/R/library/base/R-ex/Dates.R lib/R/library/base/R-ex/Extract.R lib/R/library/base/R-ex/Extract.data.frame.R lib/R/library/base/R-ex/Extract.factor.R lib/R/library/base/R-ex/Extremes.R -lib/R/library/base/R-ex/FDist.R lib/R/library/base/R-ex/Formaldehyde.R -lib/R/library/base/R-ex/GammaDist.R -lib/R/library/base/R-ex/Geometric.R lib/R/library/base/R-ex/HairEyeColor.R -lib/R/library/base/R-ex/Hershey.R -lib/R/library/base/R-ex/Hypergeometric.R -lib/R/library/base/R-ex/IQR.R lib/R/library/base/R-ex/InsectSprays.R -lib/R/library/base/R-ex/Japanese.R lib/R/library/base/R-ex/Last.value.R lib/R/library/base/R-ex/LifeCycleSavings.R lib/R/library/base/R-ex/Log.R lib/R/library/base/R-ex/Logic.R -lib/R/library/base/R-ex/Logistic.R -lib/R/library/base/R-ex/Lognormal.R lib/R/library/base/R-ex/Math.R lib/R/library/base/R-ex/Memory.R -lib/R/library/base/R-ex/Multinom.R lib/R/library/base/R-ex/NA.R lib/R/library/base/R-ex/NULL.R -lib/R/library/base/R-ex/NegBinomial.R -lib/R/library/base/R-ex/Normal.R lib/R/library/base/R-ex/OrchardSprays.R lib/R/library/base/R-ex/Paren.R lib/R/library/base/R-ex/PlantGrowth.R lib/R/library/base/R-ex/Platform.R -lib/R/library/base/R-ex/Poisson.R lib/R/library/base/R-ex/Primitive.R lib/R/library/base/R-ex/Random-user.R lib/R/library/base/R-ex/Random.R lib/R/library/base/R-ex/Recall.R lib/R/library/base/R-ex/Round.R -lib/R/library/base/R-ex/Rprof.R -lib/R/library/base/R-ex/SignRank.R lib/R/library/base/R-ex/Special.R lib/R/library/base/R-ex/Startup.R lib/R/library/base/R-ex/Sys.info.R lib/R/library/base/R-ex/Sys.sleep.R lib/R/library/base/R-ex/Sys.time.R -lib/R/library/base/R-ex/TDist.R lib/R/library/base/R-ex/Titanic.R lib/R/library/base/R-ex/ToothGrowth.R -lib/R/library/base/R-ex/Tukey.R -lib/R/library/base/R-ex/TukeyHSD.R lib/R/library/base/R-ex/UCBAdmissions.R lib/R/library/base/R-ex/USArrests.R lib/R/library/base/R-ex/USJudgeRatings.R lib/R/library/base/R-ex/USPersonalExpenditure.R -lib/R/library/base/R-ex/Uniform.R lib/R/library/base/R-ex/VADeaths.R lib/R/library/base/R-ex/Version.R -lib/R/library/base/R-ex/Weibull.R -lib/R/library/base/R-ex/Wilcoxon.R lib/R/library/base/R-ex/abbreviate.R -lib/R/library/base/R-ex/abline.R -lib/R/library/base/R-ex/add1.R -lib/R/library/base/R-ex/aggregate.R lib/R/library/base/R-ex/agrep.R -lib/R/library/base/R-ex/airmiles.R lib/R/library/base/R-ex/airquality.R -lib/R/library/base/R-ex/alias.R lib/R/library/base/R-ex/all.R lib/R/library/base/R-ex/all.equal.R lib/R/library/base/R-ex/allnames.R -lib/R/library/base/R-ex/anova.glm.R -lib/R/library/base/R-ex/anova.lm.R lib/R/library/base/R-ex/anscombe.R lib/R/library/base/R-ex/any.R -lib/R/library/base/R-ex/aov.R lib/R/library/base/R-ex/aperm.R lib/R/library/base/R-ex/append.R lib/R/library/base/R-ex/apply.R lib/R/library/base/R-ex/approxfun.R -lib/R/library/base/R-ex/apropos.R lib/R/library/base/R-ex/args.R lib/R/library/base/R-ex/array.R -lib/R/library/base/R-ex/arrows.R lib/R/library/base/R-ex/as.POSIXlt.R lib/R/library/base/R-ex/as.environment.R lib/R/library/base/R-ex/as.function.R lib/R/library/base/R-ex/assign.R -lib/R/library/base/R-ex/assocplot.R lib/R/library/base/R-ex/attach.R lib/R/library/base/R-ex/attenu.R lib/R/library/base/R-ex/attitude.R lib/R/library/base/R-ex/attr.R lib/R/library/base/R-ex/attributes.R lib/R/library/base/R-ex/autoload.R -lib/R/library/base/R-ex/ave.R -lib/R/library/base/R-ex/axTicks.R -lib/R/library/base/R-ex/axis.POSIXct.R -lib/R/library/base/R-ex/axis.R lib/R/library/base/R-ex/backsolve.R -lib/R/library/base/R-ex/bandwidth.R -lib/R/library/base/R-ex/barplot.R lib/R/library/base/R-ex/basename.R lib/R/library/base/R-ex/bindenv.R -lib/R/library/base/R-ex/birthday.R lib/R/library/base/R-ex/body.R -lib/R/library/base/R-ex/box.R -lib/R/library/base/R-ex/boxplot.R -lib/R/library/base/R-ex/boxplot.stats.R lib/R/library/base/R-ex/bquote.R -lib/R/library/base/R-ex/browseEnv.R -lib/R/library/base/R-ex/bxp.R lib/R/library/base/R-ex/by.R lib/R/library/base/R-ex/c.R lib/R/library/base/R-ex/call.R lib/R/library/base/R-ex/capabilities.R -lib/R/library/base/R-ex/capture.output.R lib/R/library/base/R-ex/cars.R -lib/R/library/base/R-ex/case.names.R lib/R/library/base/R-ex/cat.R lib/R/library/base/R-ex/cbind.R lib/R/library/base/R-ex/char.expand.R lib/R/library/base/R-ex/character.R lib/R/library/base/R-ex/charmatch.R lib/R/library/base/R-ex/chartr.R -lib/R/library/base/R-ex/check.options.R lib/R/library/base/R-ex/chickwts.R lib/R/library/base/R-ex/chol.R lib/R/library/base/R-ex/chol2inv.R lib/R/library/base/R-ex/chull.R lib/R/library/base/R-ex/class.R -lib/R/library/base/R-ex/co2.R lib/R/library/base/R-ex/codes.R -lib/R/library/base/R-ex/coefficients.R lib/R/library/base/R-ex/col.R -lib/R/library/base/R-ex/col2rgb.R lib/R/library/base/R-ex/colSums.R lib/R/library/base/R-ex/colnames.R -lib/R/library/base/R-ex/colors.R lib/R/library/base/R-ex/commandArgs.R lib/R/library/base/R-ex/comment.R -lib/R/library/base/R-ex/complete.cases.R +lib/R/library/base/R-ex/compareVersion.R lib/R/library/base/R-ex/complex.R lib/R/library/base/R-ex/conditions.R -lib/R/library/base/R-ex/confint.R lib/R/library/base/R-ex/conflicts.R lib/R/library/base/R-ex/connections.R -lib/R/library/base/R-ex/constrOptim.R -lib/R/library/base/R-ex/contour.R -lib/R/library/base/R-ex/contrast.R -lib/R/library/base/R-ex/contrasts.R lib/R/library/base/R-ex/converters.R lib/R/library/base/R-ex/convolve.R -lib/R/library/base/R-ex/coplot.R -lib/R/library/base/R-ex/cor.R lib/R/library/base/R-ex/count.fields.R lib/R/library/base/R-ex/crossprod.R lib/R/library/base/R-ex/cumsum.R -lib/R/library/base/R-ex/curve.R lib/R/library/base/R-ex/cut.POSIXt.R lib/R/library/base/R-ex/cut.R lib/R/library/base/R-ex/data.R lib/R/library/base/R-ex/data.class.R lib/R/library/base/R-ex/data.frame.R -lib/R/library/base/R-ex/dataentry.R lib/R/library/base/R-ex/date.R lib/R/library/base/R-ex/dcf.R -lib/R/library/base/R-ex/debugger.R lib/R/library/base/R-ex/delay.R -lib/R/library/base/R-ex/delete.response.R -lib/R/library/base/R-ex/demo.R -lib/R/library/base/R-ex/density.R lib/R/library/base/R-ex/deparse.R -lib/R/library/base/R-ex/deriv.R lib/R/library/base/R-ex/det.R lib/R/library/base/R-ex/detach.R -lib/R/library/base/R-ex/dev.R -lib/R/library/base/R-ex/dev2.R lib/R/library/base/R-ex/diag.R lib/R/library/base/R-ex/diff.R lib/R/library/base/R-ex/difftime.R lib/R/library/base/R-ex/dim.R lib/R/library/base/R-ex/dimnames.R -lib/R/library/base/R-ex/discoveries.R lib/R/library/base/R-ex/do.call.R -lib/R/library/base/R-ex/dotchart.R lib/R/library/base/R-ex/double.R lib/R/library/base/R-ex/dput.R lib/R/library/base/R-ex/drop.R -lib/R/library/base/R-ex/dummy.coef.R lib/R/library/base/R-ex/dump.R lib/R/library/base/R-ex/duplicated.R lib/R/library/base/R-ex/dynload.R -lib/R/library/base/R-ex/edit.R -lib/R/library/base/R-ex/edit.data.frame.R -lib/R/library/base/R-ex/eff.aovlist.R -lib/R/library/base/R-ex/effects.R lib/R/library/base/R-ex/eigen.R lib/R/library/base/R-ex/environment.R lib/R/library/base/R-ex/esoph.R lib/R/library/base/R-ex/euro.R lib/R/library/base/R-ex/eval.R -lib/R/library/base/R-ex/example.R lib/R/library/base/R-ex/exists.R lib/R/library/base/R-ex/expand.grid.R -lib/R/library/base/R-ex/expand.model.frame.R lib/R/library/base/R-ex/expression.R -lib/R/library/base/R-ex/extractAIC.R lib/R/library/base/R-ex/factor.R -lib/R/library/base/R-ex/factor.scope.R lib/R/library/base/R-ex/faithful.R -lib/R/library/base/R-ex/family.R lib/R/library/base/R-ex/fft.R lib/R/library/base/R-ex/file.access.R lib/R/library/base/R-ex/file.info.R lib/R/library/base/R-ex/file.show.R lib/R/library/base/R-ex/files.R -lib/R/library/base/R-ex/filled.contour.R lib/R/library/base/R-ex/findInt.R -lib/R/library/base/R-ex/fivenum.R -lib/R/library/base/R-ex/fix.R lib/R/library/base/R-ex/force.R lib/R/library/base/R-ex/formals.R +lib/R/library/base/R-ex/format.Date.R lib/R/library/base/R-ex/format.R lib/R/library/base/R-ex/format.info.R lib/R/library/base/R-ex/formatDL.R lib/R/library/base/R-ex/formatc.R -lib/R/library/base/R-ex/formula.R -lib/R/library/base/R-ex/fourfoldplot.R -lib/R/library/base/R-ex/freeny.R -lib/R/library/base/R-ex/ftable.R -lib/R/library/base/R-ex/ftable.formula.R lib/R/library/base/R-ex/function.R lib/R/library/base/R-ex/gc.R lib/R/library/base/R-ex/gc.time.R lib/R/library/base/R-ex/get.R -lib/R/library/base/R-ex/getAnywhere.R -lib/R/library/base/R-ex/getFromNamespace.R lib/R/library/base/R-ex/getNativeSymbolInfo.R -lib/R/library/base/R-ex/getS3method.R lib/R/library/base/R-ex/getenv.R lib/R/library/base/R-ex/getpid.R lib/R/library/base/R-ex/getwd.R lib/R/library/base/R-ex/gl.R -lib/R/library/base/R-ex/glm.R -lib/R/library/base/R-ex/glm.control.R -lib/R/library/base/R-ex/gnome.R -lib/R/library/base/R-ex/gray.R lib/R/library/base/R-ex/grep.R -lib/R/library/base/R-ex/grid.R lib/R/library/base/R-ex/groupGeneric.R lib/R/library/base/R-ex/gzcon.R -lib/R/library/base/R-ex/help.R -lib/R/library/base/R-ex/help.search.R -lib/R/library/base/R-ex/help.start.R -lib/R/library/base/R-ex/hist.POSIXt.R -lib/R/library/base/R-ex/hist.R -lib/R/library/base/R-ex/hsv.R lib/R/library/base/R-ex/identical.R lib/R/library/base/R-ex/ifelse.R -lib/R/library/base/R-ex/image.R lib/R/library/base/R-ex/infert.R -lib/R/library/base/R-ex/influence.measures.R lib/R/library/base/R-ex/integer.R -lib/R/library/base/R-ex/integrate.R lib/R/library/base/R-ex/interaction.R -lib/R/library/base/R-ex/interaction.plot.R lib/R/library/base/R-ex/interactive.R lib/R/library/base/R-ex/invisible.R lib/R/library/base/R-ex/iris.R -lib/R/library/base/R-ex/is.empty.R lib/R/library/base/R-ex/is.finite.R lib/R/library/base/R-ex/is.language.R lib/R/library/base/R-ex/is.object.R @@ -1205,38 +1110,20 @@ lib/R/library/base/R-ex/jitter.R lib/R/library/base/R-ex/kappa.R lib/R/library/base/R-ex/kronecker.R lib/R/library/base/R-ex/lapply.R -lib/R/library/base/R-ex/layout.R -lib/R/library/base/R-ex/legend.R lib/R/library/base/R-ex/length.R lib/R/library/base/R-ex/levels.R lib/R/library/base/R-ex/library.R lib/R/library/base/R-ex/library.dynam.R -lib/R/library/base/R-ex/lines.R lib/R/library/base/R-ex/list.R lib/R/library/base/R-ex/list.files.R -lib/R/library/base/R-ex/lm.R -lib/R/library/base/R-ex/lm.influence.R -lib/R/library/base/R-ex/lm.summaries.R -lib/R/library/base/R-ex/lmfit.R lib/R/library/base/R-ex/load.R lib/R/library/base/R-ex/localeconv.R lib/R/library/base/R-ex/locales.R -lib/R/library/base/R-ex/logLik.R -lib/R/library/base/R-ex/logLik.lm.R -lib/R/library/base/R-ex/loglin.R lib/R/library/base/R-ex/longley.R lib/R/library/base/R-ex/lower.tri.R -lib/R/library/base/R-ex/lowess.R lib/R/library/base/R-ex/ls.R -lib/R/library/base/R-ex/ls.diag.R -lib/R/library/base/R-ex/lsfit.R -lib/R/library/base/R-ex/mad.R -lib/R/library/base/R-ex/mahalanobis.R -lib/R/library/base/R-ex/make.link.R lib/R/library/base/R-ex/make.names.R -lib/R/library/base/R-ex/make.socket.R lib/R/library/base/R-ex/make.unique.R -lib/R/library/base/R-ex/makepredictcall.R lib/R/library/base/R-ex/manglePackageName.R lib/R/library/base/R-ex/mapply.R lib/R/library/base/R-ex/margin.table.R @@ -1246,153 +1133,77 @@ lib/R/library/base/R-ex/match.arg.R lib/R/library/base/R-ex/match.call.R lib/R/library/base/R-ex/match.fun.R lib/R/library/base/R-ex/matmult.R -lib/R/library/base/R-ex/matplot.R lib/R/library/base/R-ex/matrix.R lib/R/library/base/R-ex/maxCol.R lib/R/library/base/R-ex/mean.R -lib/R/library/base/R-ex/median.R lib/R/library/base/R-ex/memory.profile.R -lib/R/library/base/R-ex/menu.R lib/R/library/base/R-ex/merge.R -lib/R/library/base/R-ex/methods.R lib/R/library/base/R-ex/missing.R lib/R/library/base/R-ex/mode.R -lib/R/library/base/R-ex/model.extract.R -lib/R/library/base/R-ex/model.frame.R -lib/R/library/base/R-ex/model.matrix.R -lib/R/library/base/R-ex/model.tables.R lib/R/library/base/R-ex/morley.R -lib/R/library/base/R-ex/mosaicplot.R lib/R/library/base/R-ex/mtcars.R -lib/R/library/base/R-ex/mtext.R -lib/R/library/base/R-ex/n2mfrow.R -lib/R/library/base/R-ex/na.action.R -lib/R/library/base/R-ex/na.fail.R lib/R/library/base/R-ex/name.R lib/R/library/base/R-ex/names.R lib/R/library/base/R-ex/nargs.R lib/R/library/base/R-ex/nchar.R lib/R/library/base/R-ex/nextn.R -lib/R/library/base/R-ex/nhtemp.R lib/R/library/base/R-ex/nlevels.R -lib/R/library/base/R-ex/nlm.R lib/R/library/base/R-ex/noquote.R lib/R/library/base/R-ex/notyet.R lib/R/library/base/R-ex/nrow.R lib/R/library/base/R-ex/ns-alt.R lib/R/library/base/R-ex/ns-dblcolon.R lib/R/library/base/R-ex/ns-topenv.R -lib/R/library/base/R-ex/nsl.R lib/R/library/base/R-ex/numeric.R -lib/R/library/base/R-ex/object.size.R lib/R/library/base/R-ex/on.exit.R -lib/R/library/base/R-ex/optim.R -lib/R/library/base/R-ex/optimize.R lib/R/library/base/R-ex/options.R lib/R/library/base/R-ex/order.R lib/R/library/base/R-ex/outer.R -lib/R/library/base/R-ex/p.adjust.R -lib/R/library/base/R-ex/package.contents.R -lib/R/library/base/R-ex/package.skeleton.R -lib/R/library/base/R-ex/packageStatus.R -lib/R/library/base/R-ex/pairs.R -lib/R/library/base/R-ex/palette.R -lib/R/library/base/R-ex/palettes.R -lib/R/library/base/R-ex/panel.smooth.R -lib/R/library/base/R-ex/par.R +lib/R/library/base/R-ex/packageDescription.R lib/R/library/base/R-ex/parse.R lib/R/library/base/R-ex/paste.R lib/R/library/base/R-ex/path.expand.R -lib/R/library/base/R-ex/pdf.R -lib/R/library/base/R-ex/persp.R lib/R/library/base/R-ex/phones.R -lib/R/library/base/R-ex/pictex.R -lib/R/library/base/R-ex/pie.R -lib/R/library/base/R-ex/plot.R -lib/R/library/base/R-ex/plot.dataframe.R -lib/R/library/base/R-ex/plot.design.R -lib/R/library/base/R-ex/plot.lm.R -lib/R/library/base/R-ex/plot.table.R -lib/R/library/base/R-ex/plot.ts.R -lib/R/library/base/R-ex/plot.window.R -lib/R/library/base/R-ex/plot.xy.R -lib/R/library/base/R-ex/plotdefault.R -lib/R/library/base/R-ex/plotfactor.R -lib/R/library/base/R-ex/plotformula.R -lib/R/library/base/R-ex/plothistogram.R -lib/R/library/base/R-ex/plotmath.R lib/R/library/base/R-ex/pmatch.R -lib/R/library/base/R-ex/png.R -lib/R/library/base/R-ex/points.R -lib/R/library/base/R-ex/poly.R -lib/R/library/base/R-ex/polygon.R lib/R/library/base/R-ex/polyroot.R lib/R/library/base/R-ex/pos.to.env.R -lib/R/library/base/R-ex/postscript.R -lib/R/library/base/R-ex/power.R -lib/R/library/base/R-ex/ppoints.R lib/R/library/base/R-ex/precip.R -lib/R/library/base/R-ex/predict.R -lib/R/library/base/R-ex/predict.glm.R -lib/R/library/base/R-ex/predict.lm.R -lib/R/library/base/R-ex/presidents.R lib/R/library/base/R-ex/pressure.R lib/R/library/base/R-ex/pretty.R lib/R/library/base/R-ex/print.R -lib/R/library/base/R-ex/print.coefmat.R lib/R/library/base/R-ex/print.default.R lib/R/library/base/R-ex/print.matrix.R -lib/R/library/base/R-ex/print.ts.R lib/R/library/base/R-ex/proc.time.R lib/R/library/base/R-ex/prod.R -lib/R/library/base/R-ex/proj.R -lib/R/library/base/R-ex/prompt.R -lib/R/library/base/R-ex/promptData.R lib/R/library/base/R-ex/prop.table.R lib/R/library/base/R-ex/pushBack.R lib/R/library/base/R-ex/putenv.R -lib/R/library/base/R-ex/qqnorm.R lib/R/library/base/R-ex/qr.R lib/R/library/base/R-ex/qraux.R lib/R/library/base/R-ex/quakes.R -lib/R/library/base/R-ex/quantile.R lib/R/library/base/R-ex/quit.R lib/R/library/base/R-ex/r2dtable.R lib/R/library/base/R-ex/randu.R lib/R/library/base/R-ex/range.R lib/R/library/base/R-ex/rank.R -lib/R/library/base/R-ex/read.ftable.R -lib/R/library/base/R-ex/read.fwf.R -lib/R/library/base/R-ex/read.socket.R lib/R/library/base/R-ex/readBin.R lib/R/library/base/R-ex/readLines.R lib/R/library/base/R-ex/readline.R -lib/R/library/base/R-ex/recover.R -lib/R/library/base/R-ex/rect.R lib/R/library/base/R-ex/reg.finalizer.R -lib/R/library/base/R-ex/relevel.R lib/R/library/base/R-ex/rep.R -lib/R/library/base/R-ex/replications.R -lib/R/library/base/R-ex/reshape.R lib/R/library/base/R-ex/rev.R -lib/R/library/base/R-ex/rgb.R lib/R/library/base/R-ex/rle.R lib/R/library/base/R-ex/rm.R lib/R/library/base/R-ex/round.POSIXt.R lib/R/library/base/R-ex/row.R lib/R/library/base/R-ex/rowsum.R -lib/R/library/base/R-ex/rug.R lib/R/library/base/R-ex/sQuote.R lib/R/library/base/R-ex/sample.R lib/R/library/base/R-ex/save.R -lib/R/library/base/R-ex/savehistory.R lib/R/library/base/R-ex/scale.R lib/R/library/base/R-ex/scan.R -lib/R/library/base/R-ex/screen.R -lib/R/library/base/R-ex/sd.R -lib/R/library/base/R-ex/se.contrast.R lib/R/library/base/R-ex/search.R -lib/R/library/base/R-ex/segments.R +lib/R/library/base/R-ex/seq.Date.R lib/R/library/base/R-ex/seq.POSIXt.R lib/R/library/base/R-ex/seq.R lib/R/library/base/R-ex/sequence.R @@ -1406,41 +1217,24 @@ lib/R/library/base/R-ex/slice.index.R lib/R/library/base/R-ex/socketSelect.R lib/R/library/base/R-ex/solve.R lib/R/library/base/R-ex/sort.R -lib/R/library/base/R-ex/splinefun.R lib/R/library/base/R-ex/split.R lib/R/library/base/R-ex/sprintf.R lib/R/library/base/R-ex/stack.R lib/R/library/base/R-ex/stackloss.R -lib/R/library/base/R-ex/stars.R -lib/R/library/base/R-ex/stat.anova.R -lib/R/library/base/R-ex/stem.R -lib/R/library/base/R-ex/step.R lib/R/library/base/R-ex/stop.R lib/R/library/base/R-ex/stopifnot.R -lib/R/library/base/R-ex/str.R -lib/R/library/base/R-ex/stripchart.R lib/R/library/base/R-ex/strptime.R lib/R/library/base/R-ex/strsplit.R lib/R/library/base/R-ex/structure.R -lib/R/library/base/R-ex/strwidth.R lib/R/library/base/R-ex/strwrap.R lib/R/library/base/R-ex/subset.R lib/R/library/base/R-ex/substitute.R lib/R/library/base/R-ex/substr.R lib/R/library/base/R-ex/summary.R -lib/R/library/base/R-ex/summary.aov.R -lib/R/library/base/R-ex/summary.glm.R -lib/R/library/base/R-ex/summary.lm.R -lib/R/library/base/R-ex/summary.manova.R -lib/R/library/base/R-ex/summaryRprof.R -lib/R/library/base/R-ex/sunflowerplot.R -lib/R/library/base/R-ex/sunspots.R lib/R/library/base/R-ex/svd.R lib/R/library/base/R-ex/sweep.R lib/R/library/base/R-ex/swiss.R lib/R/library/base/R-ex/switch.R -lib/R/library/base/R-ex/symbols.R -lib/R/library/base/R-ex/symnum.R lib/R/library/base/R-ex/sys.parent.R lib/R/library/base/R-ex/system.R lib/R/library/base/R-ex/system.file.R @@ -1453,49 +1247,31 @@ lib/R/library/base/R-ex/taskCallback.R lib/R/library/base/R-ex/taskCallbackManager.R lib/R/library/base/R-ex/taskCallbackNames.R lib/R/library/base/R-ex/tempfile.R -lib/R/library/base/R-ex/termplot.R -lib/R/library/base/R-ex/text.R lib/R/library/base/R-ex/textconnections.R -lib/R/library/base/R-ex/time.R -lib/R/library/base/R-ex/title.R lib/R/library/base/R-ex/toString.R lib/R/library/base/R-ex/trace.R lib/R/library/base/R-ex/traceback.R lib/R/library/base/R-ex/transform.R lib/R/library/base/R-ex/trees.R lib/R/library/base/R-ex/try.R -lib/R/library/base/R-ex/ts.R lib/R/library/base/R-ex/typeof.R lib/R/library/base/R-ex/unique.R -lib/R/library/base/R-ex/uniroot.R lib/R/library/base/R-ex/units.R lib/R/library/base/R-ex/unlist.R lib/R/library/base/R-ex/unname.R -lib/R/library/base/R-ex/update.R -lib/R/library/base/R-ex/update.formula.R -lib/R/library/base/R-ex/update.packages.R -lib/R/library/base/R-ex/url.show.R -lib/R/library/base/R-ex/uspop.R +lib/R/library/base/R-ex/userhooks.R lib/R/library/base/R-ex/vector.R -lib/R/library/base/R-ex/vignette.R lib/R/library/base/R-ex/volcano.R lib/R/library/base/R-ex/warning.R lib/R/library/base/R-ex/warnings.R lib/R/library/base/R-ex/warpbreaks.R lib/R/library/base/R-ex/weekday.POSIXt.R -lib/R/library/base/R-ex/weighted.mean.R -lib/R/library/base/R-ex/weighted.residuals.R lib/R/library/base/R-ex/which.R lib/R/library/base/R-ex/which.min.R -lib/R/library/base/R-ex/window.R lib/R/library/base/R-ex/with.R lib/R/library/base/R-ex/women.R lib/R/library/base/R-ex/write.R lib/R/library/base/R-ex/write.table.R -lib/R/library/base/R-ex/xtabs.R -lib/R/library/base/R-ex/xy.coords.R -lib/R/library/base/R-ex/xyz.coords.R -lib/R/library/base/R-ex/zC.R lib/R/library/base/R-ex/zMachine.R lib/R/library/base/R-ex/zScript.R lib/R/library/base/R/Rprofile @@ -1513,20 +1289,16 @@ lib/R/library/base/data/USArrests.tab lib/R/library/base/data/USJudgeRatings.R lib/R/library/base/data/USPersonalExpenditure.R lib/R/library/base/data/VADeaths.R -lib/R/library/base/data/airmiles.R lib/R/library/base/data/airquality.tab lib/R/library/base/data/anscombe.R lib/R/library/base/data/attenu.R lib/R/library/base/data/attitude.R lib/R/library/base/data/cars.R lib/R/library/base/data/chickwts.R -lib/R/library/base/data/co2.R -lib/R/library/base/data/discoveries.R lib/R/library/base/data/esoph.R lib/R/library/base/data/euro.R lib/R/library/base/data/eurodist.R lib/R/library/base/data/faithful.R -lib/R/library/base/data/freeny.R lib/R/library/base/data/infert.R lib/R/library/base/data/iris.R lib/R/library/base/data/iris3.R @@ -1534,10 +1306,8 @@ lib/R/library/base/data/islands.R lib/R/library/base/data/longley.R lib/R/library/base/data/morley.tab lib/R/library/base/data/mtcars.R -lib/R/library/base/data/nhtemp.R lib/R/library/base/data/phones.R lib/R/library/base/data/precip.R -lib/R/library/base/data/presidents.R lib/R/library/base/data/pressure.R lib/R/library/base/data/quakes.tab lib/R/library/base/data/randu.R @@ -1545,95 +1315,55 @@ lib/R/library/base/data/rivers.R lib/R/library/base/data/sleep.R lib/R/library/base/data/stackloss.R lib/R/library/base/data/state.R -lib/R/library/base/data/sunspots.R lib/R/library/base/data/swiss.tab lib/R/library/base/data/trees.R -lib/R/library/base/data/uspop.R lib/R/library/base/data/volcano.R lib/R/library/base/data/warpbreaks.R lib/R/library/base/data/women.R lib/R/library/base/demo/00Index -lib/R/library/base/demo/Hershey.R -lib/R/library/base/demo/Japanese.R -lib/R/library/base/demo/glm.vr.R -lib/R/library/base/demo/graphics.R -lib/R/library/base/demo/image.R lib/R/library/base/demo/is.things.R -lib/R/library/base/demo/lm.glm.R -lib/R/library/base/demo/nlm.R -lib/R/library/base/demo/persp.R -lib/R/library/base/demo/plotmath.R lib/R/library/base/demo/recursion.R lib/R/library/base/demo/scoping.R -lib/R/library/base/help/AIC lib/R/library/base/help/AnIndex lib/R/library/base/help/Arithmetic lib/R/library/base/help/AsIs -lib/R/library/base/help/BATCH lib/R/library/base/help/Bessel -lib/R/library/base/help/Beta -lib/R/library/base/help/Binomial -lib/R/library/base/help/COMPILE -lib/R/library/base/help/Cauchy -lib/R/library/base/help/Chisquare lib/R/library/base/help/Comparison lib/R/library/base/help/Constants lib/R/library/base/help/Control lib/R/library/base/help/DateTimeClasses +lib/R/library/base/help/Dates lib/R/library/base/help/Defunct lib/R/library/base/help/Deprecated -lib/R/library/base/help/Devices -lib/R/library/base/help/Exponential lib/R/library/base/help/Extract lib/R/library/base/help/Extract.data.frame lib/R/library/base/help/Extract.factor lib/R/library/base/help/Extremes -lib/R/library/base/help/FDist lib/R/library/base/help/Foreign lib/R/library/base/help/Formaldehyde -lib/R/library/base/help/GammaDist -lib/R/library/base/help/Geometric lib/R/library/base/help/HairEyeColor -lib/R/library/base/help/Hershey lib/R/library/base/help/Hyperbolic -lib/R/library/base/help/Hypergeometric -lib/R/library/base/help/INSTALL -lib/R/library/base/help/IQR lib/R/library/base/help/InsectSprays lib/R/library/base/help/Internal -lib/R/library/base/help/Japanese -lib/R/library/base/help/LINK lib/R/library/base/help/Last.value lib/R/library/base/help/LifeCycleSavings lib/R/library/base/help/Log lib/R/library/base/help/Logic -lib/R/library/base/help/Logistic -lib/R/library/base/help/Lognormal lib/R/library/base/help/Math lib/R/library/base/help/Memory -lib/R/library/base/help/Multinom lib/R/library/base/help/NA lib/R/library/base/help/NULL -lib/R/library/base/help/NegBinomial -lib/R/library/base/help/Normal lib/R/library/base/help/OrchardSprays lib/R/library/base/help/Paren -lib/R/library/base/help/PkgUtils lib/R/library/base/help/PlantGrowth lib/R/library/base/help/Platform -lib/R/library/base/help/Poisson lib/R/library/base/help/Primitive -lib/R/library/base/help/REMOVE -lib/R/library/base/help/RHOME lib/R/library/base/help/Random lib/R/library/base/help/Random-user lib/R/library/base/help/RdUtils lib/R/library/base/help/Recall lib/R/library/base/help/Rhome lib/R/library/base/help/Round -lib/R/library/base/help/Rprof -lib/R/library/base/help/SHLIB -lib/R/library/base/help/SignRank lib/R/library/base/help/Signals lib/R/library/base/help/Special lib/R/library/base/help/Startup @@ -1641,194 +1371,122 @@ lib/R/library/base/help/Syntax lib/R/library/base/help/Sys.info lib/R/library/base/help/Sys.sleep lib/R/library/base/help/Sys.time -lib/R/library/base/help/TDist lib/R/library/base/help/Titanic lib/R/library/base/help/ToothGrowth lib/R/library/base/help/Trig -lib/R/library/base/help/Tukey -lib/R/library/base/help/TukeyHSD lib/R/library/base/help/UCBAdmissions lib/R/library/base/help/USArrests lib/R/library/base/help/USJudgeRatings lib/R/library/base/help/USPersonalExpenditure -lib/R/library/base/help/Uniform lib/R/library/base/help/UseMethod lib/R/library/base/help/VADeaths lib/R/library/base/help/Version -lib/R/library/base/help/Weibull -lib/R/library/base/help/Wilcoxon lib/R/library/base/help/abbreviate -lib/R/library/base/help/abline -lib/R/library/base/help/add1 -lib/R/library/base/help/aggregate lib/R/library/base/help/agrep -lib/R/library/base/help/airmiles lib/R/library/base/help/airquality -lib/R/library/base/help/alias lib/R/library/base/help/all lib/R/library/base/help/all.equal lib/R/library/base/help/allnames -lib/R/library/base/help/anova -lib/R/library/base/help/anova.glm -lib/R/library/base/help/anova.lm lib/R/library/base/help/anscombe lib/R/library/base/help/any -lib/R/library/base/help/aov lib/R/library/base/help/aperm lib/R/library/base/help/append lib/R/library/base/help/apply lib/R/library/base/help/approxfun -lib/R/library/base/help/apropos lib/R/library/base/help/args lib/R/library/base/help/array -lib/R/library/base/help/arrows lib/R/library/base/help/as.POSIXlt lib/R/library/base/help/as.data.frame lib/R/library/base/help/as.environment lib/R/library/base/help/as.function lib/R/library/base/help/assign lib/R/library/base/help/assignOps -lib/R/library/base/help/assocplot lib/R/library/base/help/attach lib/R/library/base/help/attenu lib/R/library/base/help/attitude lib/R/library/base/help/attr lib/R/library/base/help/attributes lib/R/library/base/help/autoload -lib/R/library/base/help/ave -lib/R/library/base/help/axTicks -lib/R/library/base/help/axis -lib/R/library/base/help/axis.POSIXct lib/R/library/base/help/backsolve -lib/R/library/base/help/bandwidth -lib/R/library/base/help/barplot lib/R/library/base/help/basename lib/R/library/base/help/bindenv -lib/R/library/base/help/birthday lib/R/library/base/help/body -lib/R/library/base/help/box -lib/R/library/base/help/boxplot -lib/R/library/base/help/boxplot.stats lib/R/library/base/help/bquote -lib/R/library/base/help/browseEnv -lib/R/library/base/help/browseURL lib/R/library/base/help/browser -lib/R/library/base/help/bug.report lib/R/library/base/help/builtins -lib/R/library/base/help/bxp lib/R/library/base/help/by lib/R/library/base/help/c lib/R/library/base/help/call lib/R/library/base/help/capabilities -lib/R/library/base/help/capture.output lib/R/library/base/help/cars -lib/R/library/base/help/case.names lib/R/library/base/help/cat lib/R/library/base/help/cbind lib/R/library/base/help/char.expand lib/R/library/base/help/character lib/R/library/base/help/charmatch lib/R/library/base/help/chartr -lib/R/library/base/help/check.options lib/R/library/base/help/chickwts lib/R/library/base/help/chol lib/R/library/base/help/chol2inv lib/R/library/base/help/chull lib/R/library/base/help/citation lib/R/library/base/help/class -lib/R/library/base/help/close.socket -lib/R/library/base/help/co2 lib/R/library/base/help/codes -lib/R/library/base/help/coefficients lib/R/library/base/help/col -lib/R/library/base/help/col2rgb lib/R/library/base/help/colSums lib/R/library/base/help/colnames -lib/R/library/base/help/colors lib/R/library/base/help/commandArgs lib/R/library/base/help/comment -lib/R/library/base/help/complete.cases +lib/R/library/base/help/compareVersion lib/R/library/base/help/complex lib/R/library/base/help/conditions 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-lib/R/library/base/help/debugger lib/R/library/base/help/delay -lib/R/library/base/help/delete.response -lib/R/library/base/help/demo -lib/R/library/base/help/density lib/R/library/base/help/deparse -lib/R/library/base/help/deriv lib/R/library/base/help/det lib/R/library/base/help/detach lib/R/library/base/help/dev -lib/R/library/base/help/dev2 -lib/R/library/base/help/dev2bitmap -lib/R/library/base/help/deviance -lib/R/library/base/help/df.residual lib/R/library/base/help/diag lib/R/library/base/help/diff lib/R/library/base/help/difftime lib/R/library/base/help/dim lib/R/library/base/help/dimnames -lib/R/library/base/help/discoveries lib/R/library/base/help/do.call -lib/R/library/base/help/dotchart lib/R/library/base/help/double -lib/R/library/base/help/download.file lib/R/library/base/help/dput lib/R/library/base/help/drop -lib/R/library/base/help/dummy.coef lib/R/library/base/help/dump lib/R/library/base/help/duplicated lib/R/library/base/help/dynload -lib/R/library/base/help/edit -lib/R/library/base/help/edit.data.frame -lib/R/library/base/help/eff.aovlist -lib/R/library/base/help/effects lib/R/library/base/help/eigen lib/R/library/base/help/environment lib/R/library/base/help/esoph lib/R/library/base/help/euro lib/R/library/base/help/eurodist lib/R/library/base/help/eval -lib/R/library/base/help/example lib/R/library/base/help/exists lib/R/library/base/help/expand.grid -lib/R/library/base/help/expand.model.frame lib/R/library/base/help/expression -lib/R/library/base/help/extractAIC lib/R/library/base/help/factor -lib/R/library/base/help/factor.scope lib/R/library/base/help/faithful -lib/R/library/base/help/family lib/R/library/base/help/fft lib/R/library/base/help/file.access lib/R/library/base/help/file.choose @@ -1836,66 +1494,36 @@ lib/R/library/base/help/file.info lib/R/library/base/help/file.path lib/R/library/base/help/file.show lib/R/library/base/help/files -lib/R/library/base/help/filled.contour lib/R/library/base/help/findInt -lib/R/library/base/help/fitted.values -lib/R/library/base/help/fivenum -lib/R/library/base/help/fix lib/R/library/base/help/force lib/R/library/base/help/formals lib/R/library/base/help/format +lib/R/library/base/help/format.Date lib/R/library/base/help/format.info lib/R/library/base/help/formatDL lib/R/library/base/help/formatc -lib/R/library/base/help/formula -lib/R/library/base/help/fourfoldplot -lib/R/library/base/help/frame -lib/R/library/base/help/freeny -lib/R/library/base/help/ftable -lib/R/library/base/help/ftable.formula lib/R/library/base/help/function lib/R/library/base/help/gc lib/R/library/base/help/gc.time lib/R/library/base/help/gctorture lib/R/library/base/help/get -lib/R/library/base/help/getAnywhere -lib/R/library/base/help/getFromNamespace lib/R/library/base/help/getNativeSymbolInfo -lib/R/library/base/help/getS3method lib/R/library/base/help/getenv lib/R/library/base/help/getpid lib/R/library/base/help/getwd lib/R/library/base/help/gl -lib/R/library/base/help/glm -lib/R/library/base/help/glm.control -lib/R/library/base/help/glm.summaries -lib/R/library/base/help/gnome -lib/R/library/base/help/gray lib/R/library/base/help/grep -lib/R/library/base/help/grid lib/R/library/base/help/groupGeneric lib/R/library/base/help/gzcon -lib/R/library/base/help/help -lib/R/library/base/help/help.search -lib/R/library/base/help/help.start -lib/R/library/base/help/hist -lib/R/library/base/help/hist.POSIXt -lib/R/library/base/help/hsv lib/R/library/base/help/identical -lib/R/library/base/help/identify lib/R/library/base/help/ifelse -lib/R/library/base/help/image lib/R/library/base/help/index.search lib/R/library/base/help/infert -lib/R/library/base/help/influence.measures lib/R/library/base/help/integer -lib/R/library/base/help/integrate lib/R/library/base/help/interaction -lib/R/library/base/help/interaction.plot lib/R/library/base/help/interactive lib/R/library/base/help/invisible lib/R/library/base/help/iris -lib/R/library/base/help/is.empty lib/R/library/base/help/is.finite lib/R/library/base/help/is.function lib/R/library/base/help/is.language @@ -1909,47 +1537,23 @@ lib/R/library/base/help/kappa lib/R/library/base/help/kronecker lib/R/library/base/help/labels lib/R/library/base/help/lapply -lib/R/library/base/help/layout -lib/R/library/base/help/legend lib/R/library/base/help/length lib/R/library/base/help/levels lib/R/library/base/help/library lib/R/library/base/help/library.dynam lib/R/library/base/help/license -lib/R/library/base/help/lines lib/R/library/base/help/list lib/R/library/base/help/list.files -lib/R/library/base/help/lm -lib/R/library/base/help/lm.influence -lib/R/library/base/help/lm.summaries -lib/R/library/base/help/lmfit lib/R/library/base/help/load lib/R/library/base/help/localeconv lib/R/library/base/help/locales -lib/R/library/base/help/locator -lib/R/library/base/help/logLik -lib/R/library/base/help/logLik.glm -lib/R/library/base/help/logLik.lm lib/R/library/base/help/logical -lib/R/library/base/help/loglin lib/R/library/base/help/longley lib/R/library/base/help/lower.tri -lib/R/library/base/help/lowess lib/R/library/base/help/ls -lib/R/library/base/help/ls.diag -lib/R/library/base/help/ls.print -lib/R/library/base/help/lsfit -lib/R/library/base/help/mad -lib/R/library/base/help/mahalanobis -lib/R/library/base/help/make.link lib/R/library/base/help/make.names -lib/R/library/base/help/make.packages.html -lib/R/library/base/help/make.socket -lib/R/library/base/help/make.tables lib/R/library/base/help/make.unique -lib/R/library/base/help/makepredictcall lib/R/library/base/help/manglePackageName -lib/R/library/base/help/manova lib/R/library/base/help/mapply lib/R/library/base/help/margin.table lib/R/library/base/help/mat.or.vec @@ -1958,159 +1562,77 @@ lib/R/library/base/help/match.arg lib/R/library/base/help/match.call lib/R/library/base/help/match.fun lib/R/library/base/help/matmult -lib/R/library/base/help/matplot lib/R/library/base/help/matrix lib/R/library/base/help/maxCol lib/R/library/base/help/mean -lib/R/library/base/help/median lib/R/library/base/help/memory.profile -lib/R/library/base/help/menu lib/R/library/base/help/merge -lib/R/library/base/help/methods lib/R/library/base/help/missing lib/R/library/base/help/mode -lib/R/library/base/help/model.extract -lib/R/library/base/help/model.frame -lib/R/library/base/help/model.matrix -lib/R/library/base/help/model.tables lib/R/library/base/help/morley -lib/R/library/base/help/mosaicplot lib/R/library/base/help/mtcars -lib/R/library/base/help/mtext -lib/R/library/base/help/n2mfrow -lib/R/library/base/help/na.action -lib/R/library/base/help/na.fail -lib/R/library/base/help/nafns lib/R/library/base/help/name lib/R/library/base/help/names -lib/R/library/base/help/naprint lib/R/library/base/help/nargs lib/R/library/base/help/nchar -lib/R/library/base/help/nclass lib/R/library/base/help/nextn -lib/R/library/base/help/nhtemp lib/R/library/base/help/nlevels -lib/R/library/base/help/nlm lib/R/library/base/help/noquote lib/R/library/base/help/notyet lib/R/library/base/help/nrow lib/R/library/base/help/ns-alt lib/R/library/base/help/ns-dblcolon +lib/R/library/base/help/ns-hooks lib/R/library/base/help/ns-internal lib/R/library/base/help/ns-lowlev lib/R/library/base/help/ns-reflect lib/R/library/base/help/ns-topenv -lib/R/library/base/help/nsl lib/R/library/base/help/numeric -lib/R/library/base/help/object.size lib/R/library/base/help/octmode -lib/R/library/base/help/offset lib/R/library/base/help/on.exit -lib/R/library/base/help/optim -lib/R/library/base/help/optimize lib/R/library/base/help/options lib/R/library/base/help/order lib/R/library/base/help/outer -lib/R/library/base/help/p.adjust -lib/R/library/base/help/package.contents lib/R/library/base/help/package.dependencies -lib/R/library/base/help/package.skeleton -lib/R/library/base/help/packageStatus -lib/R/library/base/help/page -lib/R/library/base/help/pairs -lib/R/library/base/help/palette -lib/R/library/base/help/palettes -lib/R/library/base/help/panel.smooth -lib/R/library/base/help/par +lib/R/library/base/help/packageDescription lib/R/library/base/help/parse lib/R/library/base/help/paste lib/R/library/base/help/path.expand -lib/R/library/base/help/pdf -lib/R/library/base/help/persp lib/R/library/base/help/phones -lib/R/library/base/help/pictex -lib/R/library/base/help/pie -lib/R/library/base/help/plot -lib/R/library/base/help/plot.dataframe -lib/R/library/base/help/plot.density -lib/R/library/base/help/plot.design -lib/R/library/base/help/plot.lm -lib/R/library/base/help/plot.table -lib/R/library/base/help/plot.ts -lib/R/library/base/help/plot.window -lib/R/library/base/help/plot.xy -lib/R/library/base/help/plotdefault -lib/R/library/base/help/plotfactor -lib/R/library/base/help/plotformula -lib/R/library/base/help/plothistogram -lib/R/library/base/help/plotmath lib/R/library/base/help/pmatch -lib/R/library/base/help/png -lib/R/library/base/help/points -lib/R/library/base/help/poly -lib/R/library/base/help/polygon lib/R/library/base/help/polyroot lib/R/library/base/help/pos.to.env -lib/R/library/base/help/postscript -lib/R/library/base/help/power -lib/R/library/base/help/ppoints lib/R/library/base/help/precip -lib/R/library/base/help/predict -lib/R/library/base/help/predict.glm -lib/R/library/base/help/predict.lm -lib/R/library/base/help/preplot -lib/R/library/base/help/presidents lib/R/library/base/help/pressure lib/R/library/base/help/pretty lib/R/library/base/help/print -lib/R/library/base/help/print.coefmat lib/R/library/base/help/print.dataframe lib/R/library/base/help/print.default lib/R/library/base/help/print.matrix -lib/R/library/base/help/print.ts lib/R/library/base/help/proc.time lib/R/library/base/help/prod -lib/R/library/base/help/profile -lib/R/library/base/help/proj -lib/R/library/base/help/prompt -lib/R/library/base/help/promptData lib/R/library/base/help/prop.table lib/R/library/base/help/pushBack lib/R/library/base/help/putenv -lib/R/library/base/help/qqnorm lib/R/library/base/help/qr lib/R/library/base/help/qraux lib/R/library/base/help/quakes -lib/R/library/base/help/quantile -lib/R/library/base/help/quartz lib/R/library/base/help/quit lib/R/library/base/help/r2dtable lib/R/library/base/help/randu lib/R/library/base/help/range lib/R/library/base/help/rank lib/R/library/base/help/read.00Index -lib/R/library/base/help/read.ftable -lib/R/library/base/help/read.fwf -lib/R/library/base/help/read.socket lib/R/library/base/help/read.table lib/R/library/base/help/readBin lib/R/library/base/help/readLines lib/R/library/base/help/readline lib/R/library/base/help/real -lib/R/library/base/help/recordplot -lib/R/library/base/help/recover -lib/R/library/base/help/rect lib/R/library/base/help/reg.finalizer lib/R/library/base/help/regex -lib/R/library/base/help/relevel -lib/R/library/base/help/remove.packages lib/R/library/base/help/rep lib/R/library/base/help/replace -lib/R/library/base/help/replications -lib/R/library/base/help/reshape -lib/R/library/base/help/residuals lib/R/library/base/help/rev -lib/R/library/base/help/rgb lib/R/library/base/help/rivers lib/R/library/base/help/rle lib/R/library/base/help/rm @@ -2118,21 +1640,15 @@ lib/R/library/base/help/round.POSIXt lib/R/library/base/help/row lib/R/library/base/help/row.names lib/R/library/base/help/rowsum -lib/R/library/base/help/rug lib/R/library/base/help/sQuote lib/R/library/base/help/sample lib/R/library/base/help/save -lib/R/library/base/help/savehistory lib/R/library/base/help/scale lib/R/library/base/help/scan -lib/R/library/base/help/screen -lib/R/library/base/help/sd -lib/R/library/base/help/se.aov -lib/R/library/base/help/se.contrast lib/R/library/base/help/search lib/R/library/base/help/seek -lib/R/library/base/help/segments lib/R/library/base/help/seq +lib/R/library/base/help/seq.Date lib/R/library/base/help/seq.POSIXt 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lib/R/library/grid/help/grid.pretty lib/R/library/grid/help/grid.rect +lib/R/library/grid/help/grid.remove lib/R/library/grid/help/grid.segments lib/R/library/grid/help/grid.set lib/R/library/grid/help/grid.show.layout @@ -4540,25 +3683,33 @@ lib/R/library/grid/help/grid.show.viewport lib/R/library/grid/help/grid.text lib/R/library/grid/help/grid.xaxis lib/R/library/grid/help/grid.yaxis -lib/R/library/grid/help/height.details +lib/R/library/grid/help/grobWidth lib/R/library/grid/help/plotViewport lib/R/library/grid/help/pop.viewport lib/R/library/grid/help/push.viewport +lib/R/library/grid/help/stringWidth lib/R/library/grid/help/unit lib/R/library/grid/help/unit.c lib/R/library/grid/help/unit.length lib/R/library/grid/help/unit.pmin lib/R/library/grid/help/unit.rep +lib/R/library/grid/help/validDetails lib/R/library/grid/help/viewport -lib/R/library/grid/help/width.details +lib/R/library/grid/help/viewports +lib/R/library/grid/help/vpPath +lib/R/library/grid/help/widthDetails 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lib/R/library/grid/latex/current.viewport.tex lib/R/library/grid/latex/dataViewport.tex +lib/R/library/grid/latex/drawDetails.tex +lib/R/library/grid/latex/editDetails.tex +lib/R/library/grid/latex/gPath.tex lib/R/library/grid/latex/gpar.tex lib/R/library/grid/latex/grid-internal.tex +lib/R/library/grid/latex/grid.add.tex lib/R/library/grid/latex/grid.arrows.tex lib/R/library/grid/latex/grid.circle.tex lib/R/library/grid/latex/grid.collection.tex @@ -4632,6 +3792,7 @@ lib/R/library/grid/latex/grid.points.tex lib/R/library/grid/latex/grid.polygon.tex lib/R/library/grid/latex/grid.pretty.tex lib/R/library/grid/latex/grid.rect.tex +lib/R/library/grid/latex/grid.remove.tex lib/R/library/grid/latex/grid.segments.tex lib/R/library/grid/latex/grid.set.tex lib/R/library/grid/latex/grid.show.layout.tex @@ -4639,17 +3800,21 @@ lib/R/library/grid/latex/grid.show.viewport.tex lib/R/library/grid/latex/grid.text.tex lib/R/library/grid/latex/grid.xaxis.tex lib/R/library/grid/latex/grid.yaxis.tex 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-lib/R/library/mgcv/R-ex/GAMsetup.R -lib/R/library/mgcv/R-ex/QT.R +lib/R/library/mgcv/Meta/nsInfo.rds +lib/R/library/mgcv/NAMESPACE +lib/R/library/mgcv/R-ex/Predict.matrix.R lib/R/library/mgcv/R-ex/exclude.too.far.R +lib/R/library/mgcv/R-ex/extract.lme.cov.R lib/R/library/mgcv/R-ex/gam.R lib/R/library/mgcv/R-ex/gam.check.R lib/R/library/mgcv/R-ex/gam.models.R lib/R/library/mgcv/R-ex/gam.neg.bin.R lib/R/library/mgcv/R-ex/gam.side.conditions.R +lib/R/library/mgcv/R-ex/gamm.R +lib/R/library/mgcv/R-ex/get.var.R +lib/R/library/mgcv/R-ex/magic.R lib/R/library/mgcv/R-ex/mgcv.R lib/R/library/mgcv/R-ex/mono.con.R +lib/R/library/mgcv/R-ex/new.name.R +lib/R/library/mgcv/R-ex/notExp.R lib/R/library/mgcv/R-ex/null.space.dimension.R lib/R/library/mgcv/R-ex/pcls.R +lib/R/library/mgcv/R-ex/pdIdnot.R +lib/R/library/mgcv/R-ex/pdTens.R +lib/R/library/mgcv/R-ex/place.knots.R lib/R/library/mgcv/R-ex/plot.gam.R lib/R/library/mgcv/R-ex/predict.gam.R lib/R/library/mgcv/R-ex/s.R 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-7768,22 +7924,22 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/share/R @dirrm lib/R/share @dirrm lib/R/modules -@dirrm lib/R/library/ts/man -@dirrm lib/R/library/ts/libs -@dirrm lib/R/library/ts/latex -@dirrm lib/R/library/ts/html -@dirrm lib/R/library/ts/help -@dirrm lib/R/library/ts/data -@dirrm lib/R/library/ts/R-ex +@dirrm lib/R/library/utils/man +@dirrm lib/R/library/utils/latex +@dirrm lib/R/library/utils/html +@dirrm lib/R/library/utils/help +@dirrm lib/R/library/utils/Sweave +@dirrm lib/R/library/utils/R-ex +@dirrm lib/R/library/utils/R +@dirrm lib/R/library/utils/Meta +@dirrm lib/R/library/utils @dirrm lib/R/library/ts/R -@dirrm lib/R/library/ts/Meta @dirrm lib/R/library/ts @dirrm lib/R/library/tools/man @dirrm lib/R/library/tools/libs @dirrm lib/R/library/tools/latex @dirrm lib/R/library/tools/html @dirrm lib/R/library/tools/help -@dirrm lib/R/library/tools/Sweave @dirrm lib/R/library/tools/R-ex @dirrm lib/R/library/tools/R @dirrm lib/R/library/tools/Meta @@ -7809,14 +7965,27 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/survival/R @dirrm lib/R/library/survival/Meta @dirrm lib/R/library/survival -@dirrm lib/R/library/stepfun/man -@dirrm lib/R/library/stepfun/latex -@dirrm lib/R/library/stepfun/html -@dirrm lib/R/library/stepfun/help -@dirrm lib/R/library/stepfun/R-ex @dirrm lib/R/library/stepfun/R -@dirrm lib/R/library/stepfun/Meta @dirrm lib/R/library/stepfun +@dirrm lib/R/library/stats4/man +@dirrm lib/R/library/stats4/latex +@dirrm lib/R/library/stats4/html +@dirrm lib/R/library/stats4/help +@dirrm lib/R/library/stats4/R-ex +@dirrm lib/R/library/stats4/R +@dirrm lib/R/library/stats4/Meta +@dirrm lib/R/library/stats4 +@dirrm lib/R/library/stats/man +@dirrm lib/R/library/stats/libs +@dirrm lib/R/library/stats/latex +@dirrm lib/R/library/stats/html +@dirrm lib/R/library/stats/help +@dirrm lib/R/library/stats/demo +@dirrm lib/R/library/stats/data +@dirrm lib/R/library/stats/R-ex +@dirrm lib/R/library/stats/R +@dirrm lib/R/library/stats/Meta +@dirrm lib/R/library/stats @dirrm lib/R/library/splines/man @dirrm lib/R/library/splines/libs @dirrm lib/R/library/splines/latex @@ -7855,15 +8024,7 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/nnet/R @dirrm lib/R/library/nnet/Meta @dirrm lib/R/library/nnet -@dirrm lib/R/library/nls/man -@dirrm lib/R/library/nls/libs -@dirrm lib/R/library/nls/latex -@dirrm lib/R/library/nls/html -@dirrm lib/R/library/nls/help -@dirrm lib/R/library/nls/data -@dirrm lib/R/library/nls/R-ex @dirrm lib/R/library/nls/R -@dirrm lib/R/library/nls/Meta @dirrm lib/R/library/nls @dirrm lib/R/library/nlme/scripts @dirrm lib/R/library/nlme/mlbook @@ -7877,33 +8038,11 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/nlme/R @dirrm lib/R/library/nlme/Meta @dirrm lib/R/library/nlme -@dirrm lib/R/library/mva/man -@dirrm lib/R/library/mva/libs -@dirrm lib/R/library/mva/latex -@dirrm lib/R/library/mva/html -@dirrm lib/R/library/mva/help -@dirrm lib/R/library/mva/data -@dirrm lib/R/library/mva/R-ex @dirrm lib/R/library/mva/R -@dirrm lib/R/library/mva/Meta @dirrm lib/R/library/mva -@dirrm lib/R/library/modreg/man -@dirrm lib/R/library/modreg/libs -@dirrm lib/R/library/modreg/latex -@dirrm lib/R/library/modreg/html -@dirrm lib/R/library/modreg/help -@dirrm lib/R/library/modreg/data -@dirrm lib/R/library/modreg/R-ex @dirrm lib/R/library/modreg/R -@dirrm lib/R/library/modreg/Meta @dirrm lib/R/library/modreg -@dirrm lib/R/library/mle/man -@dirrm lib/R/library/mle/latex -@dirrm lib/R/library/mle/html -@dirrm lib/R/library/mle/help -@dirrm lib/R/library/mle/R-ex @dirrm lib/R/library/mle/R -@dirrm lib/R/library/mle/Meta @dirrm lib/R/library/mle @dirrm lib/R/library/mgcv/man @dirrm lib/R/library/mgcv/libs @@ -7923,14 +8062,7 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/methods/R @dirrm lib/R/library/methods/Meta @dirrm lib/R/library/methods -@dirrm lib/R/library/lqs/man -@dirrm lib/R/library/lqs/libs -@dirrm lib/R/library/lqs/latex -@dirrm lib/R/library/lqs/html -@dirrm lib/R/library/lqs/help -@dirrm lib/R/library/lqs/R-ex @dirrm lib/R/library/lqs/R -@dirrm lib/R/library/lqs/Meta @dirrm lib/R/library/lqs @dirrm lib/R/library/lattice/man @dirrm lib/R/library/lattice/libs @@ -7953,6 +8085,15 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/grid/R @dirrm lib/R/library/grid/Meta @dirrm lib/R/library/grid +@dirrm lib/R/library/graphics/man +@dirrm lib/R/library/graphics/latex +@dirrm lib/R/library/graphics/html +@dirrm lib/R/library/graphics/help +@dirrm lib/R/library/graphics/demo +@dirrm lib/R/library/graphics/R-ex +@dirrm lib/R/library/graphics/R +@dirrm lib/R/library/graphics/Meta +@dirrm lib/R/library/graphics @dirrm lib/R/library/foreign/man @dirrm lib/R/library/foreign/libs @dirrm lib/R/library/foreign/latex @@ -7962,24 +8103,9 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/foreign/R @dirrm lib/R/library/foreign/Meta @dirrm lib/R/library/foreign -@dirrm lib/R/library/eda/man -@dirrm lib/R/library/eda/libs -@dirrm lib/R/library/eda/latex -@dirrm lib/R/library/eda/html -@dirrm lib/R/library/eda/help -@dirrm lib/R/library/eda/demo -@dirrm lib/R/library/eda/R-ex @dirrm lib/R/library/eda/R -@dirrm lib/R/library/eda/Meta @dirrm lib/R/library/eda -@dirrm lib/R/library/ctest/man -@dirrm lib/R/library/ctest/libs -@dirrm lib/R/library/ctest/latex -@dirrm lib/R/library/ctest/html -@dirrm lib/R/library/ctest/help -@dirrm lib/R/library/ctest/R-ex @dirrm lib/R/library/ctest/R -@dirrm lib/R/library/ctest/Meta @dirrm lib/R/library/ctest @dirrm lib/R/library/cluster/man @dirrm lib/R/library/cluster/libs diff --git a/math/R-project/Makefile b/math/R-project/Makefile index 84503ef49bc4..d6354d088c45 100644 --- a/math/R-project/Makefile +++ b/math/R-project/Makefile @@ -1,5 +1,5 @@ # ex: ts=8 sts=0 noet -# New ports collection makefile for: R (letter) +# New ports collection makefile for: R # Date created: Fri Feb 9 10:50:25 EST 2001 # Whom: Maurice Castro <maurice@serc.rmit.edu.au> # @@ -7,7 +7,7 @@ # PORTNAME= R -PORTVERSION= 1.8.1 +PORTVERSION= 1.9.0 CATEGORIES= math MASTER_SITES= http://cran.r-project.org/src/base/ \ ftp://cran.r-project.org/pub/R/src/base/ \ @@ -27,14 +27,11 @@ MASTER_SITES= http://cran.r-project.org/src/base/ \ http://probability.ca/cran/src/base/ \ http://www.ibiblio.org/pub/languages/R/CRAN/src/base/ \ http://www.bioconductor.org/CRAN/src/base/ -PKGNAMESUFFIX= -${PAPERSIZE} EXTRACT_SUFX= .tgz MAINTAINER= vangyzen@stat.duke.edu COMMENT= A language for statistical computing and graphics -CONFLICTS?= R-a4-* - LIB_DEPENDS= tcl84:${PORTSDIR}/lang/tcl84 \ tk84:${PORTSDIR}/x11-toolkits/tk84 \ jpeg.9:${PORTSDIR}/graphics/jpeg \ @@ -49,29 +46,39 @@ LIB_DEPENDS+= lapack.3:${PORTSDIR}/math/lapack CONFIGURE_ARGS= --with-lapack="-llapack" --with-blas="-lblas" .endif +MAN1= R.1 + GNU_CONFIGURE= yes USE_XLIB= yes USE_PERL5= yes -CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} FFLAGS="${FFLAGS}" \ +CONFIGURE_ENV= FFLAGS="${FFLAGS}" \ INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" -CONFIGURE_ARGS+=--enable-R-shlib - -PAPERSIZE?= letter -.if ${PAPERSIZE} != letter && ${PAPERSIZE} != a4 -.BEGIN: - @${ECHO} "Invalid value for PAPERSIZE: \"${PAPERSIZE}\"" - @${ECHO} "Possible values are: a4 letter" - @${FALSE} -.endif +CONFIGURE_ARGS+=--enable-R-shlib --with-bzlib --with-pcre --with-zlib -MAN1= R.1 +# NB: R 1.9.0 requires zlib 1.2.1, but the system zlib is currently +# only 1.1.4. Thus, R compiles its own bundled version of zlib +# despite configuring with --with-zlib. .include <bsd.port.pre.mk> +pre-fetch: +.if !defined(PAPERSIZE) + @${ECHO} + @${ECHO} " The default paper size for printing from R is A4." + @${ECHO} " You can change it by setting the PAPERSIZE" + @${ECHO} " make variable to one of:" + @${ECHO} " a4 letter legal executive" + @${ECHO} " For example:" + @${ECHO} " # make PAPERSIZE=letter install clean" + @${ECHO} +.else +CONFIGURE_ENV+= R_PAPERSIZE=${PAPERSIZE} +.endif + # Build the four documentation formats sequentially (instead of simultaneously) # to prevent perl 5.8 from using too much memory (> 512 MB) and being killed. .if ${PERL_LEVEL} >= 500800 -ALL_TARGET= Makefile Makeconf R help html latex examples stamp-recommended +ALL_TARGET= Makefile Makeconf R help html latex examples docs stamp-recommended .endif test check: build diff --git a/math/R-project/distinfo b/math/R-project/distinfo index b23f198df043..fda50e0b4072 100644 --- a/math/R-project/distinfo +++ b/math/R-project/distinfo @@ -1,2 +1,2 @@ -MD5 (R-1.8.1.tgz) = cd81fdeaf22f93dfc28979e8132722ec -SIZE (R-1.8.1.tgz) = 9407628 +MD5 (R-1.9.0.tgz) = 79ae9d20a7bed94d7c92504c8c130310 +SIZE (R-1.9.0.tgz) = 9505598 diff --git a/math/R-project/pkg-plist b/math/R-project/pkg-plist index 763fa0845b9e..0a5d91ac51b7 100644 --- a/math/R-project/pkg-plist +++ b/math/R-project/pkg-plist @@ -40,6 +40,8 @@ lib/R/afm/c059013l.afm lib/R/afm/c059016l.afm lib/R/afm/c059033l.afm lib/R/afm/c059036l.afm +lib/R/afm/cmbxti10.afm +lib/R/afm/cmti10.afm lib/R/afm/cob_____.afm lib/R/afm/cobo____.afm lib/R/afm/com_____.afm @@ -186,6 +188,7 @@ lib/R/library/KernSmooth/DESCRIPTION lib/R/library/KernSmooth/INDEX lib/R/library/KernSmooth/Meta/Rd.rds lib/R/library/KernSmooth/Meta/hsearch.rds +lib/R/library/KernSmooth/Meta/nsInfo.rds lib/R/library/KernSmooth/NAMESPACE lib/R/library/KernSmooth/R-ex/bkde.R lib/R/library/KernSmooth/R-ex/bkde2D.R @@ -227,6 +230,7 @@ lib/R/library/MASS/LICENCE lib/R/library/MASS/Meta/Rd.rds lib/R/library/MASS/Meta/data.rds lib/R/library/MASS/Meta/hsearch.rds +lib/R/library/MASS/Meta/nsInfo.rds lib/R/library/MASS/NAMESPACE lib/R/library/MASS/R-ex/Insurance.R lib/R/library/MASS/R-ex/Null.R @@ -247,6 +251,7 @@ lib/R/library/MASS/R-ex/cement.R lib/R/library/MASS/R-ex/confint.R lib/R/library/MASS/R-ex/contr.sdif.R lib/R/library/MASS/R-ex/corresp.R +lib/R/library/MASS/R-ex/cov.rob.R lib/R/library/MASS/R-ex/cov.trob.R lib/R/library/MASS/R-ex/denumerate.R lib/R/library/MASS/R-ex/dose.p.R @@ -274,6 +279,7 @@ lib/R/library/MASS/R-ex/leuk.R lib/R/library/MASS/R-ex/lm.ridge.R lib/R/library/MASS/R-ex/loglm.R lib/R/library/MASS/R-ex/logtrans.R +lib/R/library/MASS/R-ex/lqs.R lib/R/library/MASS/R-ex/mca.R lib/R/library/MASS/R-ex/menarche.R lib/R/library/MASS/R-ex/motors.R @@ -288,6 +294,7 @@ lib/R/library/MASS/R-ex/petrol.R lib/R/library/MASS/R-ex/plot.mca.R lib/R/library/MASS/R-ex/polr.R lib/R/library/MASS/R-ex/predict.lda.R +lib/R/library/MASS/R-ex/predict.lqs.R lib/R/library/MASS/R-ex/predict.qda.R lib/R/library/MASS/R-ex/qda.R lib/R/library/MASS/R-ex/rational.R @@ -451,6 +458,7 @@ lib/R/library/MASS/help/confint lib/R/library/MASS/help/contr.sdif lib/R/library/MASS/help/coop lib/R/library/MASS/help/corresp +lib/R/library/MASS/help/cov.rob lib/R/library/MASS/help/cov.trob lib/R/library/MASS/help/cpus lib/R/library/MASS/help/crabs @@ -495,6 +503,7 @@ lib/R/library/MASS/help/lm.ridge lib/R/library/MASS/help/loglm lib/R/library/MASS/help/loglm1 lib/R/library/MASS/help/logtrans +lib/R/library/MASS/help/lqs lib/R/library/MASS/help/mammals lib/R/library/MASS/help/mca lib/R/library/MASS/help/mcycle @@ -520,6 +529,7 @@ lib/R/library/MASS/help/plot.lda lib/R/library/MASS/help/plot.mca lib/R/library/MASS/help/polr lib/R/library/MASS/help/predict.lda +lib/R/library/MASS/help/predict.lqs lib/R/library/MASS/help/predict.mca lib/R/library/MASS/help/predict.qda lib/R/library/MASS/help/qda @@ -608,6 +618,7 @@ lib/R/library/MASS/html/confint.html lib/R/library/MASS/html/contr.sdif.html lib/R/library/MASS/html/coop.html lib/R/library/MASS/html/corresp.html +lib/R/library/MASS/html/cov.rob.html lib/R/library/MASS/html/cov.trob.html lib/R/library/MASS/html/cpus.html lib/R/library/MASS/html/crabs.html @@ -652,6 +663,7 @@ lib/R/library/MASS/html/lm.ridge.html lib/R/library/MASS/html/loglm.html lib/R/library/MASS/html/loglm1.html lib/R/library/MASS/html/logtrans.html +lib/R/library/MASS/html/lqs.html lib/R/library/MASS/html/mammals.html lib/R/library/MASS/html/mca.html lib/R/library/MASS/html/mcycle.html @@ -677,6 +689,7 @@ lib/R/library/MASS/html/plot.lda.html lib/R/library/MASS/html/plot.mca.html lib/R/library/MASS/html/polr.html lib/R/library/MASS/html/predict.lda.html +lib/R/library/MASS/html/predict.lqs.html lib/R/library/MASS/html/predict.mca.html lib/R/library/MASS/html/predict.qda.html lib/R/library/MASS/html/qda.html @@ -764,6 +777,7 @@ lib/R/library/MASS/latex/confint.tex lib/R/library/MASS/latex/contr.sdif.tex lib/R/library/MASS/latex/coop.tex lib/R/library/MASS/latex/corresp.tex +lib/R/library/MASS/latex/cov.rob.tex lib/R/library/MASS/latex/cov.trob.tex lib/R/library/MASS/latex/cpus.tex lib/R/library/MASS/latex/crabs.tex @@ -808,6 +822,7 @@ lib/R/library/MASS/latex/lm.ridge.tex lib/R/library/MASS/latex/loglm.tex lib/R/library/MASS/latex/loglm1.tex lib/R/library/MASS/latex/logtrans.tex +lib/R/library/MASS/latex/lqs.tex lib/R/library/MASS/latex/mammals.tex lib/R/library/MASS/latex/mca.tex lib/R/library/MASS/latex/mcycle.tex @@ -833,6 +848,7 @@ lib/R/library/MASS/latex/plot.lda.tex lib/R/library/MASS/latex/plot.mca.tex lib/R/library/MASS/latex/polr.tex lib/R/library/MASS/latex/predict.lda.tex +lib/R/library/MASS/latex/predict.lqs.tex lib/R/library/MASS/latex/predict.mca.tex lib/R/library/MASS/latex/predict.qda.tex lib/R/library/MASS/latex/qda.tex @@ -913,288 +929,177 @@ lib/R/library/base/Meta/Rd.rds lib/R/library/base/Meta/data.rds lib/R/library/base/Meta/demo.rds lib/R/library/base/Meta/hsearch.rds -lib/R/library/base/R-ex/AIC.R lib/R/library/base/R-ex/Arithmetic.R lib/R/library/base/R-ex/Bessel.R -lib/R/library/base/R-ex/Beta.R -lib/R/library/base/R-ex/Binomial.R -lib/R/library/base/R-ex/Cauchy.R -lib/R/library/base/R-ex/Chisquare.R lib/R/library/base/R-ex/Comparison.R lib/R/library/base/R-ex/Constants.R lib/R/library/base/R-ex/Control.R lib/R/library/base/R-ex/DateTimeClasses.R -lib/R/library/base/R-ex/Devices.R -lib/R/library/base/R-ex/Exponential.R +lib/R/library/base/R-ex/Dates.R lib/R/library/base/R-ex/Extract.R lib/R/library/base/R-ex/Extract.data.frame.R lib/R/library/base/R-ex/Extract.factor.R lib/R/library/base/R-ex/Extremes.R -lib/R/library/base/R-ex/FDist.R lib/R/library/base/R-ex/Formaldehyde.R -lib/R/library/base/R-ex/GammaDist.R -lib/R/library/base/R-ex/Geometric.R lib/R/library/base/R-ex/HairEyeColor.R -lib/R/library/base/R-ex/Hershey.R -lib/R/library/base/R-ex/Hypergeometric.R -lib/R/library/base/R-ex/IQR.R lib/R/library/base/R-ex/InsectSprays.R -lib/R/library/base/R-ex/Japanese.R lib/R/library/base/R-ex/Last.value.R lib/R/library/base/R-ex/LifeCycleSavings.R lib/R/library/base/R-ex/Log.R lib/R/library/base/R-ex/Logic.R -lib/R/library/base/R-ex/Logistic.R -lib/R/library/base/R-ex/Lognormal.R lib/R/library/base/R-ex/Math.R lib/R/library/base/R-ex/Memory.R -lib/R/library/base/R-ex/Multinom.R lib/R/library/base/R-ex/NA.R lib/R/library/base/R-ex/NULL.R -lib/R/library/base/R-ex/NegBinomial.R -lib/R/library/base/R-ex/Normal.R lib/R/library/base/R-ex/OrchardSprays.R lib/R/library/base/R-ex/Paren.R lib/R/library/base/R-ex/PlantGrowth.R lib/R/library/base/R-ex/Platform.R -lib/R/library/base/R-ex/Poisson.R lib/R/library/base/R-ex/Primitive.R lib/R/library/base/R-ex/Random-user.R lib/R/library/base/R-ex/Random.R lib/R/library/base/R-ex/Recall.R lib/R/library/base/R-ex/Round.R -lib/R/library/base/R-ex/Rprof.R -lib/R/library/base/R-ex/SignRank.R lib/R/library/base/R-ex/Special.R lib/R/library/base/R-ex/Startup.R lib/R/library/base/R-ex/Sys.info.R lib/R/library/base/R-ex/Sys.sleep.R lib/R/library/base/R-ex/Sys.time.R -lib/R/library/base/R-ex/TDist.R lib/R/library/base/R-ex/Titanic.R lib/R/library/base/R-ex/ToothGrowth.R -lib/R/library/base/R-ex/Tukey.R -lib/R/library/base/R-ex/TukeyHSD.R lib/R/library/base/R-ex/UCBAdmissions.R lib/R/library/base/R-ex/USArrests.R lib/R/library/base/R-ex/USJudgeRatings.R lib/R/library/base/R-ex/USPersonalExpenditure.R -lib/R/library/base/R-ex/Uniform.R lib/R/library/base/R-ex/VADeaths.R lib/R/library/base/R-ex/Version.R -lib/R/library/base/R-ex/Weibull.R -lib/R/library/base/R-ex/Wilcoxon.R lib/R/library/base/R-ex/abbreviate.R -lib/R/library/base/R-ex/abline.R -lib/R/library/base/R-ex/add1.R -lib/R/library/base/R-ex/aggregate.R lib/R/library/base/R-ex/agrep.R -lib/R/library/base/R-ex/airmiles.R lib/R/library/base/R-ex/airquality.R -lib/R/library/base/R-ex/alias.R lib/R/library/base/R-ex/all.R lib/R/library/base/R-ex/all.equal.R lib/R/library/base/R-ex/allnames.R -lib/R/library/base/R-ex/anova.glm.R -lib/R/library/base/R-ex/anova.lm.R lib/R/library/base/R-ex/anscombe.R lib/R/library/base/R-ex/any.R -lib/R/library/base/R-ex/aov.R lib/R/library/base/R-ex/aperm.R lib/R/library/base/R-ex/append.R lib/R/library/base/R-ex/apply.R lib/R/library/base/R-ex/approxfun.R -lib/R/library/base/R-ex/apropos.R lib/R/library/base/R-ex/args.R lib/R/library/base/R-ex/array.R -lib/R/library/base/R-ex/arrows.R lib/R/library/base/R-ex/as.POSIXlt.R lib/R/library/base/R-ex/as.environment.R lib/R/library/base/R-ex/as.function.R lib/R/library/base/R-ex/assign.R -lib/R/library/base/R-ex/assocplot.R lib/R/library/base/R-ex/attach.R lib/R/library/base/R-ex/attenu.R lib/R/library/base/R-ex/attitude.R lib/R/library/base/R-ex/attr.R lib/R/library/base/R-ex/attributes.R lib/R/library/base/R-ex/autoload.R -lib/R/library/base/R-ex/ave.R -lib/R/library/base/R-ex/axTicks.R -lib/R/library/base/R-ex/axis.POSIXct.R -lib/R/library/base/R-ex/axis.R lib/R/library/base/R-ex/backsolve.R -lib/R/library/base/R-ex/bandwidth.R -lib/R/library/base/R-ex/barplot.R lib/R/library/base/R-ex/basename.R lib/R/library/base/R-ex/bindenv.R -lib/R/library/base/R-ex/birthday.R lib/R/library/base/R-ex/body.R -lib/R/library/base/R-ex/box.R -lib/R/library/base/R-ex/boxplot.R -lib/R/library/base/R-ex/boxplot.stats.R lib/R/library/base/R-ex/bquote.R -lib/R/library/base/R-ex/browseEnv.R -lib/R/library/base/R-ex/bxp.R lib/R/library/base/R-ex/by.R lib/R/library/base/R-ex/c.R lib/R/library/base/R-ex/call.R lib/R/library/base/R-ex/capabilities.R -lib/R/library/base/R-ex/capture.output.R lib/R/library/base/R-ex/cars.R -lib/R/library/base/R-ex/case.names.R lib/R/library/base/R-ex/cat.R lib/R/library/base/R-ex/cbind.R lib/R/library/base/R-ex/char.expand.R lib/R/library/base/R-ex/character.R lib/R/library/base/R-ex/charmatch.R lib/R/library/base/R-ex/chartr.R -lib/R/library/base/R-ex/check.options.R lib/R/library/base/R-ex/chickwts.R lib/R/library/base/R-ex/chol.R lib/R/library/base/R-ex/chol2inv.R lib/R/library/base/R-ex/chull.R lib/R/library/base/R-ex/class.R -lib/R/library/base/R-ex/co2.R lib/R/library/base/R-ex/codes.R -lib/R/library/base/R-ex/coefficients.R lib/R/library/base/R-ex/col.R -lib/R/library/base/R-ex/col2rgb.R lib/R/library/base/R-ex/colSums.R lib/R/library/base/R-ex/colnames.R -lib/R/library/base/R-ex/colors.R lib/R/library/base/R-ex/commandArgs.R lib/R/library/base/R-ex/comment.R -lib/R/library/base/R-ex/complete.cases.R +lib/R/library/base/R-ex/compareVersion.R lib/R/library/base/R-ex/complex.R lib/R/library/base/R-ex/conditions.R -lib/R/library/base/R-ex/confint.R lib/R/library/base/R-ex/conflicts.R lib/R/library/base/R-ex/connections.R -lib/R/library/base/R-ex/constrOptim.R -lib/R/library/base/R-ex/contour.R -lib/R/library/base/R-ex/contrast.R -lib/R/library/base/R-ex/contrasts.R lib/R/library/base/R-ex/converters.R lib/R/library/base/R-ex/convolve.R -lib/R/library/base/R-ex/coplot.R -lib/R/library/base/R-ex/cor.R lib/R/library/base/R-ex/count.fields.R lib/R/library/base/R-ex/crossprod.R lib/R/library/base/R-ex/cumsum.R -lib/R/library/base/R-ex/curve.R lib/R/library/base/R-ex/cut.POSIXt.R lib/R/library/base/R-ex/cut.R lib/R/library/base/R-ex/data.R lib/R/library/base/R-ex/data.class.R lib/R/library/base/R-ex/data.frame.R -lib/R/library/base/R-ex/dataentry.R lib/R/library/base/R-ex/date.R lib/R/library/base/R-ex/dcf.R -lib/R/library/base/R-ex/debugger.R lib/R/library/base/R-ex/delay.R -lib/R/library/base/R-ex/delete.response.R -lib/R/library/base/R-ex/demo.R -lib/R/library/base/R-ex/density.R lib/R/library/base/R-ex/deparse.R -lib/R/library/base/R-ex/deriv.R lib/R/library/base/R-ex/det.R lib/R/library/base/R-ex/detach.R -lib/R/library/base/R-ex/dev.R -lib/R/library/base/R-ex/dev2.R lib/R/library/base/R-ex/diag.R lib/R/library/base/R-ex/diff.R lib/R/library/base/R-ex/difftime.R lib/R/library/base/R-ex/dim.R lib/R/library/base/R-ex/dimnames.R -lib/R/library/base/R-ex/discoveries.R lib/R/library/base/R-ex/do.call.R -lib/R/library/base/R-ex/dotchart.R lib/R/library/base/R-ex/double.R lib/R/library/base/R-ex/dput.R lib/R/library/base/R-ex/drop.R -lib/R/library/base/R-ex/dummy.coef.R lib/R/library/base/R-ex/dump.R lib/R/library/base/R-ex/duplicated.R lib/R/library/base/R-ex/dynload.R -lib/R/library/base/R-ex/edit.R -lib/R/library/base/R-ex/edit.data.frame.R -lib/R/library/base/R-ex/eff.aovlist.R -lib/R/library/base/R-ex/effects.R lib/R/library/base/R-ex/eigen.R lib/R/library/base/R-ex/environment.R lib/R/library/base/R-ex/esoph.R lib/R/library/base/R-ex/euro.R lib/R/library/base/R-ex/eval.R -lib/R/library/base/R-ex/example.R lib/R/library/base/R-ex/exists.R lib/R/library/base/R-ex/expand.grid.R -lib/R/library/base/R-ex/expand.model.frame.R lib/R/library/base/R-ex/expression.R -lib/R/library/base/R-ex/extractAIC.R lib/R/library/base/R-ex/factor.R -lib/R/library/base/R-ex/factor.scope.R lib/R/library/base/R-ex/faithful.R -lib/R/library/base/R-ex/family.R lib/R/library/base/R-ex/fft.R lib/R/library/base/R-ex/file.access.R lib/R/library/base/R-ex/file.info.R lib/R/library/base/R-ex/file.show.R lib/R/library/base/R-ex/files.R -lib/R/library/base/R-ex/filled.contour.R lib/R/library/base/R-ex/findInt.R -lib/R/library/base/R-ex/fivenum.R -lib/R/library/base/R-ex/fix.R lib/R/library/base/R-ex/force.R lib/R/library/base/R-ex/formals.R +lib/R/library/base/R-ex/format.Date.R lib/R/library/base/R-ex/format.R lib/R/library/base/R-ex/format.info.R lib/R/library/base/R-ex/formatDL.R lib/R/library/base/R-ex/formatc.R -lib/R/library/base/R-ex/formula.R -lib/R/library/base/R-ex/fourfoldplot.R -lib/R/library/base/R-ex/freeny.R -lib/R/library/base/R-ex/ftable.R -lib/R/library/base/R-ex/ftable.formula.R lib/R/library/base/R-ex/function.R lib/R/library/base/R-ex/gc.R lib/R/library/base/R-ex/gc.time.R lib/R/library/base/R-ex/get.R -lib/R/library/base/R-ex/getAnywhere.R -lib/R/library/base/R-ex/getFromNamespace.R lib/R/library/base/R-ex/getNativeSymbolInfo.R -lib/R/library/base/R-ex/getS3method.R lib/R/library/base/R-ex/getenv.R lib/R/library/base/R-ex/getpid.R lib/R/library/base/R-ex/getwd.R lib/R/library/base/R-ex/gl.R -lib/R/library/base/R-ex/glm.R -lib/R/library/base/R-ex/glm.control.R -lib/R/library/base/R-ex/gnome.R -lib/R/library/base/R-ex/gray.R lib/R/library/base/R-ex/grep.R -lib/R/library/base/R-ex/grid.R lib/R/library/base/R-ex/groupGeneric.R lib/R/library/base/R-ex/gzcon.R -lib/R/library/base/R-ex/help.R -lib/R/library/base/R-ex/help.search.R -lib/R/library/base/R-ex/help.start.R -lib/R/library/base/R-ex/hist.POSIXt.R -lib/R/library/base/R-ex/hist.R -lib/R/library/base/R-ex/hsv.R lib/R/library/base/R-ex/identical.R lib/R/library/base/R-ex/ifelse.R -lib/R/library/base/R-ex/image.R lib/R/library/base/R-ex/infert.R -lib/R/library/base/R-ex/influence.measures.R lib/R/library/base/R-ex/integer.R -lib/R/library/base/R-ex/integrate.R lib/R/library/base/R-ex/interaction.R -lib/R/library/base/R-ex/interaction.plot.R lib/R/library/base/R-ex/interactive.R lib/R/library/base/R-ex/invisible.R lib/R/library/base/R-ex/iris.R -lib/R/library/base/R-ex/is.empty.R lib/R/library/base/R-ex/is.finite.R lib/R/library/base/R-ex/is.language.R lib/R/library/base/R-ex/is.object.R @@ -1205,38 +1110,20 @@ lib/R/library/base/R-ex/jitter.R lib/R/library/base/R-ex/kappa.R lib/R/library/base/R-ex/kronecker.R lib/R/library/base/R-ex/lapply.R -lib/R/library/base/R-ex/layout.R -lib/R/library/base/R-ex/legend.R lib/R/library/base/R-ex/length.R lib/R/library/base/R-ex/levels.R lib/R/library/base/R-ex/library.R lib/R/library/base/R-ex/library.dynam.R -lib/R/library/base/R-ex/lines.R lib/R/library/base/R-ex/list.R lib/R/library/base/R-ex/list.files.R -lib/R/library/base/R-ex/lm.R -lib/R/library/base/R-ex/lm.influence.R -lib/R/library/base/R-ex/lm.summaries.R -lib/R/library/base/R-ex/lmfit.R lib/R/library/base/R-ex/load.R lib/R/library/base/R-ex/localeconv.R lib/R/library/base/R-ex/locales.R -lib/R/library/base/R-ex/logLik.R -lib/R/library/base/R-ex/logLik.lm.R -lib/R/library/base/R-ex/loglin.R lib/R/library/base/R-ex/longley.R lib/R/library/base/R-ex/lower.tri.R -lib/R/library/base/R-ex/lowess.R lib/R/library/base/R-ex/ls.R -lib/R/library/base/R-ex/ls.diag.R -lib/R/library/base/R-ex/lsfit.R -lib/R/library/base/R-ex/mad.R -lib/R/library/base/R-ex/mahalanobis.R -lib/R/library/base/R-ex/make.link.R lib/R/library/base/R-ex/make.names.R -lib/R/library/base/R-ex/make.socket.R lib/R/library/base/R-ex/make.unique.R -lib/R/library/base/R-ex/makepredictcall.R lib/R/library/base/R-ex/manglePackageName.R lib/R/library/base/R-ex/mapply.R lib/R/library/base/R-ex/margin.table.R @@ -1246,153 +1133,77 @@ lib/R/library/base/R-ex/match.arg.R lib/R/library/base/R-ex/match.call.R lib/R/library/base/R-ex/match.fun.R lib/R/library/base/R-ex/matmult.R -lib/R/library/base/R-ex/matplot.R lib/R/library/base/R-ex/matrix.R lib/R/library/base/R-ex/maxCol.R lib/R/library/base/R-ex/mean.R -lib/R/library/base/R-ex/median.R lib/R/library/base/R-ex/memory.profile.R -lib/R/library/base/R-ex/menu.R lib/R/library/base/R-ex/merge.R -lib/R/library/base/R-ex/methods.R lib/R/library/base/R-ex/missing.R lib/R/library/base/R-ex/mode.R -lib/R/library/base/R-ex/model.extract.R -lib/R/library/base/R-ex/model.frame.R -lib/R/library/base/R-ex/model.matrix.R -lib/R/library/base/R-ex/model.tables.R lib/R/library/base/R-ex/morley.R -lib/R/library/base/R-ex/mosaicplot.R lib/R/library/base/R-ex/mtcars.R -lib/R/library/base/R-ex/mtext.R -lib/R/library/base/R-ex/n2mfrow.R -lib/R/library/base/R-ex/na.action.R -lib/R/library/base/R-ex/na.fail.R lib/R/library/base/R-ex/name.R lib/R/library/base/R-ex/names.R lib/R/library/base/R-ex/nargs.R lib/R/library/base/R-ex/nchar.R lib/R/library/base/R-ex/nextn.R -lib/R/library/base/R-ex/nhtemp.R lib/R/library/base/R-ex/nlevels.R -lib/R/library/base/R-ex/nlm.R lib/R/library/base/R-ex/noquote.R lib/R/library/base/R-ex/notyet.R lib/R/library/base/R-ex/nrow.R lib/R/library/base/R-ex/ns-alt.R lib/R/library/base/R-ex/ns-dblcolon.R lib/R/library/base/R-ex/ns-topenv.R -lib/R/library/base/R-ex/nsl.R lib/R/library/base/R-ex/numeric.R -lib/R/library/base/R-ex/object.size.R lib/R/library/base/R-ex/on.exit.R -lib/R/library/base/R-ex/optim.R -lib/R/library/base/R-ex/optimize.R lib/R/library/base/R-ex/options.R lib/R/library/base/R-ex/order.R lib/R/library/base/R-ex/outer.R -lib/R/library/base/R-ex/p.adjust.R -lib/R/library/base/R-ex/package.contents.R -lib/R/library/base/R-ex/package.skeleton.R -lib/R/library/base/R-ex/packageStatus.R -lib/R/library/base/R-ex/pairs.R -lib/R/library/base/R-ex/palette.R -lib/R/library/base/R-ex/palettes.R -lib/R/library/base/R-ex/panel.smooth.R -lib/R/library/base/R-ex/par.R +lib/R/library/base/R-ex/packageDescription.R lib/R/library/base/R-ex/parse.R lib/R/library/base/R-ex/paste.R lib/R/library/base/R-ex/path.expand.R -lib/R/library/base/R-ex/pdf.R -lib/R/library/base/R-ex/persp.R lib/R/library/base/R-ex/phones.R -lib/R/library/base/R-ex/pictex.R -lib/R/library/base/R-ex/pie.R -lib/R/library/base/R-ex/plot.R -lib/R/library/base/R-ex/plot.dataframe.R -lib/R/library/base/R-ex/plot.design.R -lib/R/library/base/R-ex/plot.lm.R -lib/R/library/base/R-ex/plot.table.R -lib/R/library/base/R-ex/plot.ts.R -lib/R/library/base/R-ex/plot.window.R -lib/R/library/base/R-ex/plot.xy.R -lib/R/library/base/R-ex/plotdefault.R -lib/R/library/base/R-ex/plotfactor.R -lib/R/library/base/R-ex/plotformula.R -lib/R/library/base/R-ex/plothistogram.R -lib/R/library/base/R-ex/plotmath.R lib/R/library/base/R-ex/pmatch.R -lib/R/library/base/R-ex/png.R -lib/R/library/base/R-ex/points.R -lib/R/library/base/R-ex/poly.R -lib/R/library/base/R-ex/polygon.R lib/R/library/base/R-ex/polyroot.R lib/R/library/base/R-ex/pos.to.env.R -lib/R/library/base/R-ex/postscript.R -lib/R/library/base/R-ex/power.R -lib/R/library/base/R-ex/ppoints.R lib/R/library/base/R-ex/precip.R -lib/R/library/base/R-ex/predict.R -lib/R/library/base/R-ex/predict.glm.R -lib/R/library/base/R-ex/predict.lm.R -lib/R/library/base/R-ex/presidents.R lib/R/library/base/R-ex/pressure.R lib/R/library/base/R-ex/pretty.R lib/R/library/base/R-ex/print.R -lib/R/library/base/R-ex/print.coefmat.R lib/R/library/base/R-ex/print.default.R lib/R/library/base/R-ex/print.matrix.R -lib/R/library/base/R-ex/print.ts.R lib/R/library/base/R-ex/proc.time.R lib/R/library/base/R-ex/prod.R -lib/R/library/base/R-ex/proj.R -lib/R/library/base/R-ex/prompt.R -lib/R/library/base/R-ex/promptData.R lib/R/library/base/R-ex/prop.table.R lib/R/library/base/R-ex/pushBack.R lib/R/library/base/R-ex/putenv.R -lib/R/library/base/R-ex/qqnorm.R lib/R/library/base/R-ex/qr.R lib/R/library/base/R-ex/qraux.R lib/R/library/base/R-ex/quakes.R -lib/R/library/base/R-ex/quantile.R lib/R/library/base/R-ex/quit.R lib/R/library/base/R-ex/r2dtable.R lib/R/library/base/R-ex/randu.R lib/R/library/base/R-ex/range.R lib/R/library/base/R-ex/rank.R -lib/R/library/base/R-ex/read.ftable.R -lib/R/library/base/R-ex/read.fwf.R -lib/R/library/base/R-ex/read.socket.R lib/R/library/base/R-ex/readBin.R lib/R/library/base/R-ex/readLines.R lib/R/library/base/R-ex/readline.R -lib/R/library/base/R-ex/recover.R -lib/R/library/base/R-ex/rect.R lib/R/library/base/R-ex/reg.finalizer.R -lib/R/library/base/R-ex/relevel.R lib/R/library/base/R-ex/rep.R -lib/R/library/base/R-ex/replications.R -lib/R/library/base/R-ex/reshape.R lib/R/library/base/R-ex/rev.R -lib/R/library/base/R-ex/rgb.R lib/R/library/base/R-ex/rle.R lib/R/library/base/R-ex/rm.R lib/R/library/base/R-ex/round.POSIXt.R lib/R/library/base/R-ex/row.R lib/R/library/base/R-ex/rowsum.R -lib/R/library/base/R-ex/rug.R lib/R/library/base/R-ex/sQuote.R lib/R/library/base/R-ex/sample.R lib/R/library/base/R-ex/save.R -lib/R/library/base/R-ex/savehistory.R lib/R/library/base/R-ex/scale.R lib/R/library/base/R-ex/scan.R -lib/R/library/base/R-ex/screen.R -lib/R/library/base/R-ex/sd.R -lib/R/library/base/R-ex/se.contrast.R lib/R/library/base/R-ex/search.R -lib/R/library/base/R-ex/segments.R +lib/R/library/base/R-ex/seq.Date.R lib/R/library/base/R-ex/seq.POSIXt.R lib/R/library/base/R-ex/seq.R lib/R/library/base/R-ex/sequence.R @@ -1406,41 +1217,24 @@ lib/R/library/base/R-ex/slice.index.R lib/R/library/base/R-ex/socketSelect.R lib/R/library/base/R-ex/solve.R lib/R/library/base/R-ex/sort.R -lib/R/library/base/R-ex/splinefun.R lib/R/library/base/R-ex/split.R lib/R/library/base/R-ex/sprintf.R lib/R/library/base/R-ex/stack.R lib/R/library/base/R-ex/stackloss.R -lib/R/library/base/R-ex/stars.R -lib/R/library/base/R-ex/stat.anova.R -lib/R/library/base/R-ex/stem.R -lib/R/library/base/R-ex/step.R lib/R/library/base/R-ex/stop.R lib/R/library/base/R-ex/stopifnot.R -lib/R/library/base/R-ex/str.R -lib/R/library/base/R-ex/stripchart.R lib/R/library/base/R-ex/strptime.R lib/R/library/base/R-ex/strsplit.R lib/R/library/base/R-ex/structure.R -lib/R/library/base/R-ex/strwidth.R lib/R/library/base/R-ex/strwrap.R lib/R/library/base/R-ex/subset.R lib/R/library/base/R-ex/substitute.R lib/R/library/base/R-ex/substr.R lib/R/library/base/R-ex/summary.R -lib/R/library/base/R-ex/summary.aov.R -lib/R/library/base/R-ex/summary.glm.R -lib/R/library/base/R-ex/summary.lm.R -lib/R/library/base/R-ex/summary.manova.R -lib/R/library/base/R-ex/summaryRprof.R -lib/R/library/base/R-ex/sunflowerplot.R -lib/R/library/base/R-ex/sunspots.R lib/R/library/base/R-ex/svd.R lib/R/library/base/R-ex/sweep.R lib/R/library/base/R-ex/swiss.R lib/R/library/base/R-ex/switch.R -lib/R/library/base/R-ex/symbols.R -lib/R/library/base/R-ex/symnum.R lib/R/library/base/R-ex/sys.parent.R lib/R/library/base/R-ex/system.R lib/R/library/base/R-ex/system.file.R @@ -1453,49 +1247,31 @@ lib/R/library/base/R-ex/taskCallback.R lib/R/library/base/R-ex/taskCallbackManager.R lib/R/library/base/R-ex/taskCallbackNames.R lib/R/library/base/R-ex/tempfile.R -lib/R/library/base/R-ex/termplot.R -lib/R/library/base/R-ex/text.R lib/R/library/base/R-ex/textconnections.R -lib/R/library/base/R-ex/time.R -lib/R/library/base/R-ex/title.R lib/R/library/base/R-ex/toString.R lib/R/library/base/R-ex/trace.R lib/R/library/base/R-ex/traceback.R lib/R/library/base/R-ex/transform.R lib/R/library/base/R-ex/trees.R lib/R/library/base/R-ex/try.R -lib/R/library/base/R-ex/ts.R lib/R/library/base/R-ex/typeof.R lib/R/library/base/R-ex/unique.R -lib/R/library/base/R-ex/uniroot.R lib/R/library/base/R-ex/units.R lib/R/library/base/R-ex/unlist.R lib/R/library/base/R-ex/unname.R -lib/R/library/base/R-ex/update.R -lib/R/library/base/R-ex/update.formula.R -lib/R/library/base/R-ex/update.packages.R -lib/R/library/base/R-ex/url.show.R -lib/R/library/base/R-ex/uspop.R +lib/R/library/base/R-ex/userhooks.R lib/R/library/base/R-ex/vector.R -lib/R/library/base/R-ex/vignette.R lib/R/library/base/R-ex/volcano.R lib/R/library/base/R-ex/warning.R lib/R/library/base/R-ex/warnings.R lib/R/library/base/R-ex/warpbreaks.R lib/R/library/base/R-ex/weekday.POSIXt.R -lib/R/library/base/R-ex/weighted.mean.R -lib/R/library/base/R-ex/weighted.residuals.R lib/R/library/base/R-ex/which.R lib/R/library/base/R-ex/which.min.R -lib/R/library/base/R-ex/window.R lib/R/library/base/R-ex/with.R lib/R/library/base/R-ex/women.R lib/R/library/base/R-ex/write.R lib/R/library/base/R-ex/write.table.R -lib/R/library/base/R-ex/xtabs.R -lib/R/library/base/R-ex/xy.coords.R -lib/R/library/base/R-ex/xyz.coords.R -lib/R/library/base/R-ex/zC.R lib/R/library/base/R-ex/zMachine.R lib/R/library/base/R-ex/zScript.R lib/R/library/base/R/Rprofile @@ -1513,20 +1289,16 @@ lib/R/library/base/data/USArrests.tab lib/R/library/base/data/USJudgeRatings.R lib/R/library/base/data/USPersonalExpenditure.R lib/R/library/base/data/VADeaths.R -lib/R/library/base/data/airmiles.R lib/R/library/base/data/airquality.tab lib/R/library/base/data/anscombe.R lib/R/library/base/data/attenu.R lib/R/library/base/data/attitude.R lib/R/library/base/data/cars.R lib/R/library/base/data/chickwts.R -lib/R/library/base/data/co2.R -lib/R/library/base/data/discoveries.R lib/R/library/base/data/esoph.R lib/R/library/base/data/euro.R lib/R/library/base/data/eurodist.R lib/R/library/base/data/faithful.R -lib/R/library/base/data/freeny.R lib/R/library/base/data/infert.R lib/R/library/base/data/iris.R lib/R/library/base/data/iris3.R @@ -1534,10 +1306,8 @@ lib/R/library/base/data/islands.R lib/R/library/base/data/longley.R lib/R/library/base/data/morley.tab lib/R/library/base/data/mtcars.R -lib/R/library/base/data/nhtemp.R lib/R/library/base/data/phones.R lib/R/library/base/data/precip.R -lib/R/library/base/data/presidents.R lib/R/library/base/data/pressure.R lib/R/library/base/data/quakes.tab lib/R/library/base/data/randu.R @@ -1545,95 +1315,55 @@ lib/R/library/base/data/rivers.R lib/R/library/base/data/sleep.R lib/R/library/base/data/stackloss.R lib/R/library/base/data/state.R -lib/R/library/base/data/sunspots.R lib/R/library/base/data/swiss.tab lib/R/library/base/data/trees.R -lib/R/library/base/data/uspop.R lib/R/library/base/data/volcano.R lib/R/library/base/data/warpbreaks.R lib/R/library/base/data/women.R lib/R/library/base/demo/00Index -lib/R/library/base/demo/Hershey.R -lib/R/library/base/demo/Japanese.R -lib/R/library/base/demo/glm.vr.R -lib/R/library/base/demo/graphics.R -lib/R/library/base/demo/image.R lib/R/library/base/demo/is.things.R -lib/R/library/base/demo/lm.glm.R -lib/R/library/base/demo/nlm.R -lib/R/library/base/demo/persp.R -lib/R/library/base/demo/plotmath.R lib/R/library/base/demo/recursion.R lib/R/library/base/demo/scoping.R -lib/R/library/base/help/AIC lib/R/library/base/help/AnIndex lib/R/library/base/help/Arithmetic lib/R/library/base/help/AsIs -lib/R/library/base/help/BATCH lib/R/library/base/help/Bessel -lib/R/library/base/help/Beta -lib/R/library/base/help/Binomial -lib/R/library/base/help/COMPILE -lib/R/library/base/help/Cauchy -lib/R/library/base/help/Chisquare lib/R/library/base/help/Comparison lib/R/library/base/help/Constants lib/R/library/base/help/Control lib/R/library/base/help/DateTimeClasses +lib/R/library/base/help/Dates lib/R/library/base/help/Defunct lib/R/library/base/help/Deprecated -lib/R/library/base/help/Devices -lib/R/library/base/help/Exponential lib/R/library/base/help/Extract lib/R/library/base/help/Extract.data.frame lib/R/library/base/help/Extract.factor lib/R/library/base/help/Extremes -lib/R/library/base/help/FDist lib/R/library/base/help/Foreign lib/R/library/base/help/Formaldehyde -lib/R/library/base/help/GammaDist -lib/R/library/base/help/Geometric lib/R/library/base/help/HairEyeColor -lib/R/library/base/help/Hershey lib/R/library/base/help/Hyperbolic -lib/R/library/base/help/Hypergeometric -lib/R/library/base/help/INSTALL -lib/R/library/base/help/IQR lib/R/library/base/help/InsectSprays lib/R/library/base/help/Internal -lib/R/library/base/help/Japanese -lib/R/library/base/help/LINK lib/R/library/base/help/Last.value lib/R/library/base/help/LifeCycleSavings lib/R/library/base/help/Log lib/R/library/base/help/Logic -lib/R/library/base/help/Logistic -lib/R/library/base/help/Lognormal lib/R/library/base/help/Math lib/R/library/base/help/Memory -lib/R/library/base/help/Multinom lib/R/library/base/help/NA lib/R/library/base/help/NULL -lib/R/library/base/help/NegBinomial -lib/R/library/base/help/Normal lib/R/library/base/help/OrchardSprays lib/R/library/base/help/Paren -lib/R/library/base/help/PkgUtils lib/R/library/base/help/PlantGrowth lib/R/library/base/help/Platform -lib/R/library/base/help/Poisson lib/R/library/base/help/Primitive -lib/R/library/base/help/REMOVE -lib/R/library/base/help/RHOME lib/R/library/base/help/Random lib/R/library/base/help/Random-user lib/R/library/base/help/RdUtils lib/R/library/base/help/Recall lib/R/library/base/help/Rhome lib/R/library/base/help/Round -lib/R/library/base/help/Rprof -lib/R/library/base/help/SHLIB -lib/R/library/base/help/SignRank lib/R/library/base/help/Signals lib/R/library/base/help/Special lib/R/library/base/help/Startup @@ -1641,194 +1371,122 @@ lib/R/library/base/help/Syntax lib/R/library/base/help/Sys.info lib/R/library/base/help/Sys.sleep lib/R/library/base/help/Sys.time -lib/R/library/base/help/TDist lib/R/library/base/help/Titanic lib/R/library/base/help/ToothGrowth lib/R/library/base/help/Trig -lib/R/library/base/help/Tukey -lib/R/library/base/help/TukeyHSD lib/R/library/base/help/UCBAdmissions lib/R/library/base/help/USArrests lib/R/library/base/help/USJudgeRatings lib/R/library/base/help/USPersonalExpenditure -lib/R/library/base/help/Uniform lib/R/library/base/help/UseMethod lib/R/library/base/help/VADeaths lib/R/library/base/help/Version -lib/R/library/base/help/Weibull -lib/R/library/base/help/Wilcoxon lib/R/library/base/help/abbreviate -lib/R/library/base/help/abline -lib/R/library/base/help/add1 -lib/R/library/base/help/aggregate lib/R/library/base/help/agrep -lib/R/library/base/help/airmiles lib/R/library/base/help/airquality -lib/R/library/base/help/alias lib/R/library/base/help/all lib/R/library/base/help/all.equal lib/R/library/base/help/allnames -lib/R/library/base/help/anova -lib/R/library/base/help/anova.glm -lib/R/library/base/help/anova.lm lib/R/library/base/help/anscombe lib/R/library/base/help/any -lib/R/library/base/help/aov lib/R/library/base/help/aperm lib/R/library/base/help/append lib/R/library/base/help/apply lib/R/library/base/help/approxfun -lib/R/library/base/help/apropos lib/R/library/base/help/args lib/R/library/base/help/array -lib/R/library/base/help/arrows lib/R/library/base/help/as.POSIXlt lib/R/library/base/help/as.data.frame lib/R/library/base/help/as.environment lib/R/library/base/help/as.function lib/R/library/base/help/assign lib/R/library/base/help/assignOps -lib/R/library/base/help/assocplot lib/R/library/base/help/attach lib/R/library/base/help/attenu lib/R/library/base/help/attitude lib/R/library/base/help/attr lib/R/library/base/help/attributes lib/R/library/base/help/autoload -lib/R/library/base/help/ave -lib/R/library/base/help/axTicks -lib/R/library/base/help/axis -lib/R/library/base/help/axis.POSIXct lib/R/library/base/help/backsolve -lib/R/library/base/help/bandwidth -lib/R/library/base/help/barplot lib/R/library/base/help/basename lib/R/library/base/help/bindenv -lib/R/library/base/help/birthday lib/R/library/base/help/body -lib/R/library/base/help/box -lib/R/library/base/help/boxplot -lib/R/library/base/help/boxplot.stats lib/R/library/base/help/bquote -lib/R/library/base/help/browseEnv -lib/R/library/base/help/browseURL lib/R/library/base/help/browser -lib/R/library/base/help/bug.report lib/R/library/base/help/builtins -lib/R/library/base/help/bxp lib/R/library/base/help/by lib/R/library/base/help/c lib/R/library/base/help/call lib/R/library/base/help/capabilities -lib/R/library/base/help/capture.output lib/R/library/base/help/cars -lib/R/library/base/help/case.names lib/R/library/base/help/cat lib/R/library/base/help/cbind lib/R/library/base/help/char.expand lib/R/library/base/help/character lib/R/library/base/help/charmatch lib/R/library/base/help/chartr -lib/R/library/base/help/check.options lib/R/library/base/help/chickwts lib/R/library/base/help/chol lib/R/library/base/help/chol2inv lib/R/library/base/help/chull lib/R/library/base/help/citation lib/R/library/base/help/class -lib/R/library/base/help/close.socket -lib/R/library/base/help/co2 lib/R/library/base/help/codes -lib/R/library/base/help/coefficients lib/R/library/base/help/col -lib/R/library/base/help/col2rgb lib/R/library/base/help/colSums lib/R/library/base/help/colnames -lib/R/library/base/help/colors lib/R/library/base/help/commandArgs lib/R/library/base/help/comment -lib/R/library/base/help/complete.cases +lib/R/library/base/help/compareVersion lib/R/library/base/help/complex lib/R/library/base/help/conditions -lib/R/library/base/help/confint lib/R/library/base/help/conflicts lib/R/library/base/help/connections -lib/R/library/base/help/constrOptim -lib/R/library/base/help/contour -lib/R/library/base/help/contrast -lib/R/library/base/help/contrasts lib/R/library/base/help/contributors lib/R/library/base/help/converters lib/R/library/base/help/convolve -lib/R/library/base/help/coplot lib/R/library/base/help/copyright -lib/R/library/base/help/cor lib/R/library/base/help/count.fields -lib/R/library/base/help/cov.wt lib/R/library/base/help/crossprod lib/R/library/base/help/cumsum -lib/R/library/base/help/curve lib/R/library/base/help/cut lib/R/library/base/help/cut.POSIXt lib/R/library/base/help/data lib/R/library/base/help/data.class lib/R/library/base/help/data.frame lib/R/library/base/help/data.matrix -lib/R/library/base/help/dataentry lib/R/library/base/help/dataframeHelpers lib/R/library/base/help/date lib/R/library/base/help/dcf lib/R/library/base/help/debug -lib/R/library/base/help/debugger lib/R/library/base/help/delay -lib/R/library/base/help/delete.response -lib/R/library/base/help/demo -lib/R/library/base/help/density lib/R/library/base/help/deparse -lib/R/library/base/help/deriv lib/R/library/base/help/det lib/R/library/base/help/detach lib/R/library/base/help/dev -lib/R/library/base/help/dev2 -lib/R/library/base/help/dev2bitmap -lib/R/library/base/help/deviance -lib/R/library/base/help/df.residual lib/R/library/base/help/diag lib/R/library/base/help/diff lib/R/library/base/help/difftime lib/R/library/base/help/dim lib/R/library/base/help/dimnames -lib/R/library/base/help/discoveries lib/R/library/base/help/do.call -lib/R/library/base/help/dotchart lib/R/library/base/help/double -lib/R/library/base/help/download.file lib/R/library/base/help/dput lib/R/library/base/help/drop -lib/R/library/base/help/dummy.coef lib/R/library/base/help/dump lib/R/library/base/help/duplicated lib/R/library/base/help/dynload -lib/R/library/base/help/edit -lib/R/library/base/help/edit.data.frame -lib/R/library/base/help/eff.aovlist -lib/R/library/base/help/effects lib/R/library/base/help/eigen lib/R/library/base/help/environment lib/R/library/base/help/esoph lib/R/library/base/help/euro lib/R/library/base/help/eurodist lib/R/library/base/help/eval -lib/R/library/base/help/example lib/R/library/base/help/exists lib/R/library/base/help/expand.grid -lib/R/library/base/help/expand.model.frame lib/R/library/base/help/expression -lib/R/library/base/help/extractAIC lib/R/library/base/help/factor -lib/R/library/base/help/factor.scope lib/R/library/base/help/faithful -lib/R/library/base/help/family lib/R/library/base/help/fft lib/R/library/base/help/file.access lib/R/library/base/help/file.choose @@ -1836,66 +1494,36 @@ lib/R/library/base/help/file.info lib/R/library/base/help/file.path lib/R/library/base/help/file.show lib/R/library/base/help/files -lib/R/library/base/help/filled.contour lib/R/library/base/help/findInt -lib/R/library/base/help/fitted.values -lib/R/library/base/help/fivenum -lib/R/library/base/help/fix lib/R/library/base/help/force lib/R/library/base/help/formals lib/R/library/base/help/format +lib/R/library/base/help/format.Date lib/R/library/base/help/format.info lib/R/library/base/help/formatDL lib/R/library/base/help/formatc -lib/R/library/base/help/formula -lib/R/library/base/help/fourfoldplot -lib/R/library/base/help/frame -lib/R/library/base/help/freeny -lib/R/library/base/help/ftable -lib/R/library/base/help/ftable.formula lib/R/library/base/help/function lib/R/library/base/help/gc lib/R/library/base/help/gc.time lib/R/library/base/help/gctorture lib/R/library/base/help/get -lib/R/library/base/help/getAnywhere -lib/R/library/base/help/getFromNamespace lib/R/library/base/help/getNativeSymbolInfo -lib/R/library/base/help/getS3method lib/R/library/base/help/getenv lib/R/library/base/help/getpid lib/R/library/base/help/getwd lib/R/library/base/help/gl -lib/R/library/base/help/glm -lib/R/library/base/help/glm.control -lib/R/library/base/help/glm.summaries -lib/R/library/base/help/gnome -lib/R/library/base/help/gray lib/R/library/base/help/grep -lib/R/library/base/help/grid lib/R/library/base/help/groupGeneric lib/R/library/base/help/gzcon -lib/R/library/base/help/help -lib/R/library/base/help/help.search -lib/R/library/base/help/help.start -lib/R/library/base/help/hist -lib/R/library/base/help/hist.POSIXt -lib/R/library/base/help/hsv lib/R/library/base/help/identical -lib/R/library/base/help/identify lib/R/library/base/help/ifelse -lib/R/library/base/help/image lib/R/library/base/help/index.search lib/R/library/base/help/infert -lib/R/library/base/help/influence.measures lib/R/library/base/help/integer -lib/R/library/base/help/integrate lib/R/library/base/help/interaction -lib/R/library/base/help/interaction.plot lib/R/library/base/help/interactive lib/R/library/base/help/invisible lib/R/library/base/help/iris -lib/R/library/base/help/is.empty lib/R/library/base/help/is.finite lib/R/library/base/help/is.function lib/R/library/base/help/is.language @@ -1909,47 +1537,23 @@ lib/R/library/base/help/kappa lib/R/library/base/help/kronecker lib/R/library/base/help/labels lib/R/library/base/help/lapply -lib/R/library/base/help/layout -lib/R/library/base/help/legend lib/R/library/base/help/length lib/R/library/base/help/levels lib/R/library/base/help/library lib/R/library/base/help/library.dynam lib/R/library/base/help/license -lib/R/library/base/help/lines lib/R/library/base/help/list lib/R/library/base/help/list.files -lib/R/library/base/help/lm -lib/R/library/base/help/lm.influence -lib/R/library/base/help/lm.summaries -lib/R/library/base/help/lmfit lib/R/library/base/help/load lib/R/library/base/help/localeconv lib/R/library/base/help/locales -lib/R/library/base/help/locator -lib/R/library/base/help/logLik -lib/R/library/base/help/logLik.glm -lib/R/library/base/help/logLik.lm lib/R/library/base/help/logical 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+lib/R/library/utils/latex/help.search.tex +lib/R/library/utils/latex/help.start.tex +lib/R/library/utils/latex/help.tex +lib/R/library/utils/latex/make.packages.html.tex +lib/R/library/utils/latex/make.socket.tex +lib/R/library/utils/latex/menu.tex +lib/R/library/utils/latex/methods.tex +lib/R/library/utils/latex/nsl.tex +lib/R/library/utils/latex/object.size.tex +lib/R/library/utils/latex/package.skeleton.tex +lib/R/library/utils/latex/packageStatus.tex +lib/R/library/utils/latex/page.tex +lib/R/library/utils/latex/prompt.tex +lib/R/library/utils/latex/promptData.tex +lib/R/library/utils/latex/read.fwf.tex +lib/R/library/utils/latex/read.socket.tex +lib/R/library/utils/latex/recover.tex +lib/R/library/utils/latex/remove.packages.tex +lib/R/library/utils/latex/savehistory.tex +lib/R/library/utils/latex/shQuote.tex +lib/R/library/utils/latex/str.tex +lib/R/library/utils/latex/summaryRprof.tex +lib/R/library/utils/latex/update.packages.tex +lib/R/library/utils/latex/url.show.tex +lib/R/library/utils/latex/utils-deprecated.tex +lib/R/library/utils/latex/utils-internal.tex +lib/R/library/utils/latex/vignette.tex +lib/R/library/utils/man/utils.Rd lib/R/modules/R_X11.so lib/R/modules/internet.so lib/R/modules/lapack.so @@ -7738,23 +7901,16 @@ lib/R/share/perl/R/Rdlists.pm lib/R/share/perl/R/Rdtools.pm lib/R/share/perl/R/Utils.pm lib/R/share/perl/R/Vars.pm -lib/R/share/perl/Rd2contents.pl lib/R/share/perl/Text/DelimMatch.pm lib/R/share/perl/build-help-windows.pl lib/R/share/perl/build-help.pl -lib/R/share/perl/extract-examples.pl -lib/R/share/perl/extract-usage.pl -lib/R/share/perl/hhw-to-rtf.pl -lib/R/share/perl/html-rtf.pl lib/R/share/perl/massage-Examples.pl -lib/R/share/perl/parse-html.pl lib/R/share/sh/dcf.sh lib/R/share/sh/echo.sh lib/R/share/sh/help-links.sh lib/R/share/sh/help-print.sh lib/R/share/texmf/Rd.sty lib/R/share/texmf/Sweave.sty -lib/R/share/texmf/hyperref.cfg lib/R/share/texmf/omsaer.fd lib/R/share/texmf/omsaett.fd lib/R/share/texmf/omscmtt.fd @@ -7768,22 +7924,22 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/share/R @dirrm lib/R/share @dirrm lib/R/modules -@dirrm lib/R/library/ts/man -@dirrm lib/R/library/ts/libs -@dirrm lib/R/library/ts/latex -@dirrm lib/R/library/ts/html -@dirrm lib/R/library/ts/help -@dirrm lib/R/library/ts/data -@dirrm lib/R/library/ts/R-ex +@dirrm lib/R/library/utils/man +@dirrm lib/R/library/utils/latex +@dirrm lib/R/library/utils/html +@dirrm lib/R/library/utils/help +@dirrm lib/R/library/utils/Sweave +@dirrm lib/R/library/utils/R-ex +@dirrm lib/R/library/utils/R +@dirrm lib/R/library/utils/Meta +@dirrm lib/R/library/utils @dirrm lib/R/library/ts/R -@dirrm lib/R/library/ts/Meta @dirrm lib/R/library/ts @dirrm lib/R/library/tools/man @dirrm lib/R/library/tools/libs @dirrm lib/R/library/tools/latex @dirrm lib/R/library/tools/html @dirrm lib/R/library/tools/help -@dirrm lib/R/library/tools/Sweave @dirrm lib/R/library/tools/R-ex @dirrm lib/R/library/tools/R @dirrm lib/R/library/tools/Meta @@ -7809,14 +7965,27 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/survival/R @dirrm lib/R/library/survival/Meta @dirrm lib/R/library/survival -@dirrm lib/R/library/stepfun/man -@dirrm lib/R/library/stepfun/latex -@dirrm lib/R/library/stepfun/html -@dirrm lib/R/library/stepfun/help -@dirrm lib/R/library/stepfun/R-ex @dirrm lib/R/library/stepfun/R -@dirrm lib/R/library/stepfun/Meta @dirrm lib/R/library/stepfun +@dirrm lib/R/library/stats4/man +@dirrm lib/R/library/stats4/latex +@dirrm lib/R/library/stats4/html +@dirrm lib/R/library/stats4/help +@dirrm lib/R/library/stats4/R-ex +@dirrm lib/R/library/stats4/R +@dirrm lib/R/library/stats4/Meta +@dirrm lib/R/library/stats4 +@dirrm lib/R/library/stats/man +@dirrm lib/R/library/stats/libs +@dirrm lib/R/library/stats/latex +@dirrm lib/R/library/stats/html +@dirrm lib/R/library/stats/help +@dirrm lib/R/library/stats/demo +@dirrm lib/R/library/stats/data +@dirrm lib/R/library/stats/R-ex +@dirrm lib/R/library/stats/R +@dirrm lib/R/library/stats/Meta +@dirrm lib/R/library/stats @dirrm lib/R/library/splines/man @dirrm lib/R/library/splines/libs @dirrm lib/R/library/splines/latex @@ -7855,15 +8024,7 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/nnet/R @dirrm lib/R/library/nnet/Meta @dirrm lib/R/library/nnet -@dirrm lib/R/library/nls/man -@dirrm lib/R/library/nls/libs -@dirrm lib/R/library/nls/latex -@dirrm lib/R/library/nls/html -@dirrm lib/R/library/nls/help -@dirrm lib/R/library/nls/data -@dirrm lib/R/library/nls/R-ex @dirrm lib/R/library/nls/R -@dirrm lib/R/library/nls/Meta @dirrm lib/R/library/nls @dirrm lib/R/library/nlme/scripts @dirrm lib/R/library/nlme/mlbook @@ -7877,33 +8038,11 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/nlme/R @dirrm lib/R/library/nlme/Meta @dirrm lib/R/library/nlme -@dirrm lib/R/library/mva/man -@dirrm lib/R/library/mva/libs -@dirrm lib/R/library/mva/latex -@dirrm lib/R/library/mva/html -@dirrm lib/R/library/mva/help -@dirrm lib/R/library/mva/data -@dirrm lib/R/library/mva/R-ex @dirrm lib/R/library/mva/R -@dirrm lib/R/library/mva/Meta @dirrm lib/R/library/mva -@dirrm lib/R/library/modreg/man -@dirrm lib/R/library/modreg/libs -@dirrm lib/R/library/modreg/latex -@dirrm lib/R/library/modreg/html -@dirrm lib/R/library/modreg/help -@dirrm lib/R/library/modreg/data -@dirrm lib/R/library/modreg/R-ex @dirrm lib/R/library/modreg/R -@dirrm lib/R/library/modreg/Meta @dirrm lib/R/library/modreg -@dirrm lib/R/library/mle/man -@dirrm lib/R/library/mle/latex -@dirrm lib/R/library/mle/html -@dirrm lib/R/library/mle/help -@dirrm lib/R/library/mle/R-ex @dirrm lib/R/library/mle/R -@dirrm lib/R/library/mle/Meta @dirrm lib/R/library/mle @dirrm lib/R/library/mgcv/man @dirrm lib/R/library/mgcv/libs @@ -7923,14 +8062,7 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/methods/R @dirrm lib/R/library/methods/Meta @dirrm lib/R/library/methods -@dirrm lib/R/library/lqs/man -@dirrm lib/R/library/lqs/libs -@dirrm lib/R/library/lqs/latex -@dirrm lib/R/library/lqs/html -@dirrm lib/R/library/lqs/help -@dirrm lib/R/library/lqs/R-ex @dirrm lib/R/library/lqs/R -@dirrm lib/R/library/lqs/Meta @dirrm lib/R/library/lqs @dirrm lib/R/library/lattice/man @dirrm lib/R/library/lattice/libs @@ -7953,6 +8085,15 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/grid/R @dirrm lib/R/library/grid/Meta @dirrm lib/R/library/grid +@dirrm lib/R/library/graphics/man +@dirrm lib/R/library/graphics/latex +@dirrm lib/R/library/graphics/html +@dirrm lib/R/library/graphics/help +@dirrm lib/R/library/graphics/demo +@dirrm lib/R/library/graphics/R-ex +@dirrm lib/R/library/graphics/R +@dirrm lib/R/library/graphics/Meta +@dirrm lib/R/library/graphics @dirrm lib/R/library/foreign/man @dirrm lib/R/library/foreign/libs @dirrm lib/R/library/foreign/latex @@ -7962,24 +8103,9 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/foreign/R @dirrm lib/R/library/foreign/Meta @dirrm lib/R/library/foreign -@dirrm lib/R/library/eda/man -@dirrm lib/R/library/eda/libs -@dirrm lib/R/library/eda/latex -@dirrm lib/R/library/eda/html -@dirrm lib/R/library/eda/help -@dirrm lib/R/library/eda/demo -@dirrm lib/R/library/eda/R-ex @dirrm lib/R/library/eda/R -@dirrm lib/R/library/eda/Meta @dirrm lib/R/library/eda -@dirrm lib/R/library/ctest/man -@dirrm lib/R/library/ctest/libs -@dirrm lib/R/library/ctest/latex -@dirrm lib/R/library/ctest/html -@dirrm lib/R/library/ctest/help -@dirrm lib/R/library/ctest/R-ex @dirrm lib/R/library/ctest/R -@dirrm lib/R/library/ctest/Meta @dirrm lib/R/library/ctest @dirrm lib/R/library/cluster/man @dirrm lib/R/library/cluster/libs diff --git a/math/R/Makefile b/math/R/Makefile index 84503ef49bc4..d6354d088c45 100644 --- a/math/R/Makefile +++ b/math/R/Makefile @@ -1,5 +1,5 @@ # ex: ts=8 sts=0 noet -# New ports collection makefile for: R (letter) +# New ports collection makefile for: R # Date created: Fri Feb 9 10:50:25 EST 2001 # Whom: Maurice Castro <maurice@serc.rmit.edu.au> # @@ -7,7 +7,7 @@ # PORTNAME= R -PORTVERSION= 1.8.1 +PORTVERSION= 1.9.0 CATEGORIES= math MASTER_SITES= http://cran.r-project.org/src/base/ \ ftp://cran.r-project.org/pub/R/src/base/ \ @@ -27,14 +27,11 @@ MASTER_SITES= http://cran.r-project.org/src/base/ \ http://probability.ca/cran/src/base/ \ http://www.ibiblio.org/pub/languages/R/CRAN/src/base/ \ http://www.bioconductor.org/CRAN/src/base/ -PKGNAMESUFFIX= -${PAPERSIZE} EXTRACT_SUFX= .tgz MAINTAINER= vangyzen@stat.duke.edu COMMENT= A language for statistical computing and graphics -CONFLICTS?= R-a4-* - LIB_DEPENDS= tcl84:${PORTSDIR}/lang/tcl84 \ tk84:${PORTSDIR}/x11-toolkits/tk84 \ jpeg.9:${PORTSDIR}/graphics/jpeg \ @@ -49,29 +46,39 @@ LIB_DEPENDS+= lapack.3:${PORTSDIR}/math/lapack CONFIGURE_ARGS= --with-lapack="-llapack" --with-blas="-lblas" .endif +MAN1= R.1 + GNU_CONFIGURE= yes USE_XLIB= yes USE_PERL5= yes -CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} FFLAGS="${FFLAGS}" \ +CONFIGURE_ENV= FFLAGS="${FFLAGS}" \ INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" -CONFIGURE_ARGS+=--enable-R-shlib - -PAPERSIZE?= letter -.if ${PAPERSIZE} != letter && ${PAPERSIZE} != a4 -.BEGIN: - @${ECHO} "Invalid value for PAPERSIZE: \"${PAPERSIZE}\"" - @${ECHO} "Possible values are: a4 letter" - @${FALSE} -.endif +CONFIGURE_ARGS+=--enable-R-shlib --with-bzlib --with-pcre --with-zlib -MAN1= R.1 +# NB: R 1.9.0 requires zlib 1.2.1, but the system zlib is currently +# only 1.1.4. Thus, R compiles its own bundled version of zlib +# despite configuring with --with-zlib. .include <bsd.port.pre.mk> +pre-fetch: +.if !defined(PAPERSIZE) + @${ECHO} + @${ECHO} " The default paper size for printing from R is A4." + @${ECHO} " You can change it by setting the PAPERSIZE" + @${ECHO} " make variable to one of:" + @${ECHO} " a4 letter legal executive" + @${ECHO} " For example:" + @${ECHO} " # make PAPERSIZE=letter install clean" + @${ECHO} +.else +CONFIGURE_ENV+= R_PAPERSIZE=${PAPERSIZE} +.endif + # Build the four documentation formats sequentially (instead of simultaneously) # to prevent perl 5.8 from using too much memory (> 512 MB) and being killed. .if ${PERL_LEVEL} >= 500800 -ALL_TARGET= Makefile Makeconf R help html latex examples stamp-recommended +ALL_TARGET= Makefile Makeconf R help html latex examples docs stamp-recommended .endif test check: build diff --git a/math/R/distinfo b/math/R/distinfo index b23f198df043..fda50e0b4072 100644 --- a/math/R/distinfo +++ b/math/R/distinfo @@ -1,2 +1,2 @@ -MD5 (R-1.8.1.tgz) = cd81fdeaf22f93dfc28979e8132722ec -SIZE (R-1.8.1.tgz) = 9407628 +MD5 (R-1.9.0.tgz) = 79ae9d20a7bed94d7c92504c8c130310 +SIZE (R-1.9.0.tgz) = 9505598 diff --git a/math/R/pkg-plist b/math/R/pkg-plist index 763fa0845b9e..0a5d91ac51b7 100644 --- a/math/R/pkg-plist +++ b/math/R/pkg-plist @@ -40,6 +40,8 @@ lib/R/afm/c059013l.afm lib/R/afm/c059016l.afm lib/R/afm/c059033l.afm lib/R/afm/c059036l.afm +lib/R/afm/cmbxti10.afm +lib/R/afm/cmti10.afm lib/R/afm/cob_____.afm lib/R/afm/cobo____.afm lib/R/afm/com_____.afm @@ -186,6 +188,7 @@ lib/R/library/KernSmooth/DESCRIPTION lib/R/library/KernSmooth/INDEX lib/R/library/KernSmooth/Meta/Rd.rds lib/R/library/KernSmooth/Meta/hsearch.rds +lib/R/library/KernSmooth/Meta/nsInfo.rds lib/R/library/KernSmooth/NAMESPACE lib/R/library/KernSmooth/R-ex/bkde.R lib/R/library/KernSmooth/R-ex/bkde2D.R @@ -227,6 +230,7 @@ lib/R/library/MASS/LICENCE lib/R/library/MASS/Meta/Rd.rds lib/R/library/MASS/Meta/data.rds lib/R/library/MASS/Meta/hsearch.rds +lib/R/library/MASS/Meta/nsInfo.rds lib/R/library/MASS/NAMESPACE lib/R/library/MASS/R-ex/Insurance.R lib/R/library/MASS/R-ex/Null.R @@ -247,6 +251,7 @@ lib/R/library/MASS/R-ex/cement.R lib/R/library/MASS/R-ex/confint.R lib/R/library/MASS/R-ex/contr.sdif.R lib/R/library/MASS/R-ex/corresp.R +lib/R/library/MASS/R-ex/cov.rob.R lib/R/library/MASS/R-ex/cov.trob.R lib/R/library/MASS/R-ex/denumerate.R lib/R/library/MASS/R-ex/dose.p.R @@ -274,6 +279,7 @@ lib/R/library/MASS/R-ex/leuk.R lib/R/library/MASS/R-ex/lm.ridge.R lib/R/library/MASS/R-ex/loglm.R lib/R/library/MASS/R-ex/logtrans.R +lib/R/library/MASS/R-ex/lqs.R lib/R/library/MASS/R-ex/mca.R lib/R/library/MASS/R-ex/menarche.R lib/R/library/MASS/R-ex/motors.R @@ -288,6 +294,7 @@ lib/R/library/MASS/R-ex/petrol.R lib/R/library/MASS/R-ex/plot.mca.R lib/R/library/MASS/R-ex/polr.R lib/R/library/MASS/R-ex/predict.lda.R +lib/R/library/MASS/R-ex/predict.lqs.R lib/R/library/MASS/R-ex/predict.qda.R lib/R/library/MASS/R-ex/qda.R lib/R/library/MASS/R-ex/rational.R @@ -451,6 +458,7 @@ lib/R/library/MASS/help/confint lib/R/library/MASS/help/contr.sdif lib/R/library/MASS/help/coop lib/R/library/MASS/help/corresp +lib/R/library/MASS/help/cov.rob lib/R/library/MASS/help/cov.trob lib/R/library/MASS/help/cpus lib/R/library/MASS/help/crabs @@ -495,6 +503,7 @@ lib/R/library/MASS/help/lm.ridge lib/R/library/MASS/help/loglm lib/R/library/MASS/help/loglm1 lib/R/library/MASS/help/logtrans +lib/R/library/MASS/help/lqs lib/R/library/MASS/help/mammals lib/R/library/MASS/help/mca lib/R/library/MASS/help/mcycle @@ -520,6 +529,7 @@ lib/R/library/MASS/help/plot.lda lib/R/library/MASS/help/plot.mca lib/R/library/MASS/help/polr lib/R/library/MASS/help/predict.lda +lib/R/library/MASS/help/predict.lqs lib/R/library/MASS/help/predict.mca lib/R/library/MASS/help/predict.qda lib/R/library/MASS/help/qda @@ -608,6 +618,7 @@ lib/R/library/MASS/html/confint.html lib/R/library/MASS/html/contr.sdif.html lib/R/library/MASS/html/coop.html lib/R/library/MASS/html/corresp.html +lib/R/library/MASS/html/cov.rob.html lib/R/library/MASS/html/cov.trob.html lib/R/library/MASS/html/cpus.html lib/R/library/MASS/html/crabs.html @@ -652,6 +663,7 @@ lib/R/library/MASS/html/lm.ridge.html lib/R/library/MASS/html/loglm.html lib/R/library/MASS/html/loglm1.html lib/R/library/MASS/html/logtrans.html +lib/R/library/MASS/html/lqs.html lib/R/library/MASS/html/mammals.html lib/R/library/MASS/html/mca.html lib/R/library/MASS/html/mcycle.html @@ -677,6 +689,7 @@ lib/R/library/MASS/html/plot.lda.html lib/R/library/MASS/html/plot.mca.html lib/R/library/MASS/html/polr.html lib/R/library/MASS/html/predict.lda.html +lib/R/library/MASS/html/predict.lqs.html lib/R/library/MASS/html/predict.mca.html lib/R/library/MASS/html/predict.qda.html lib/R/library/MASS/html/qda.html @@ -764,6 +777,7 @@ lib/R/library/MASS/latex/confint.tex lib/R/library/MASS/latex/contr.sdif.tex lib/R/library/MASS/latex/coop.tex lib/R/library/MASS/latex/corresp.tex +lib/R/library/MASS/latex/cov.rob.tex lib/R/library/MASS/latex/cov.trob.tex lib/R/library/MASS/latex/cpus.tex lib/R/library/MASS/latex/crabs.tex @@ -808,6 +822,7 @@ lib/R/library/MASS/latex/lm.ridge.tex lib/R/library/MASS/latex/loglm.tex lib/R/library/MASS/latex/loglm1.tex lib/R/library/MASS/latex/logtrans.tex +lib/R/library/MASS/latex/lqs.tex lib/R/library/MASS/latex/mammals.tex lib/R/library/MASS/latex/mca.tex lib/R/library/MASS/latex/mcycle.tex @@ -833,6 +848,7 @@ lib/R/library/MASS/latex/plot.lda.tex lib/R/library/MASS/latex/plot.mca.tex lib/R/library/MASS/latex/polr.tex lib/R/library/MASS/latex/predict.lda.tex +lib/R/library/MASS/latex/predict.lqs.tex lib/R/library/MASS/latex/predict.mca.tex lib/R/library/MASS/latex/predict.qda.tex lib/R/library/MASS/latex/qda.tex @@ -913,288 +929,177 @@ lib/R/library/base/Meta/Rd.rds lib/R/library/base/Meta/data.rds lib/R/library/base/Meta/demo.rds lib/R/library/base/Meta/hsearch.rds -lib/R/library/base/R-ex/AIC.R lib/R/library/base/R-ex/Arithmetic.R lib/R/library/base/R-ex/Bessel.R -lib/R/library/base/R-ex/Beta.R -lib/R/library/base/R-ex/Binomial.R -lib/R/library/base/R-ex/Cauchy.R -lib/R/library/base/R-ex/Chisquare.R lib/R/library/base/R-ex/Comparison.R lib/R/library/base/R-ex/Constants.R lib/R/library/base/R-ex/Control.R lib/R/library/base/R-ex/DateTimeClasses.R -lib/R/library/base/R-ex/Devices.R -lib/R/library/base/R-ex/Exponential.R +lib/R/library/base/R-ex/Dates.R lib/R/library/base/R-ex/Extract.R lib/R/library/base/R-ex/Extract.data.frame.R lib/R/library/base/R-ex/Extract.factor.R lib/R/library/base/R-ex/Extremes.R -lib/R/library/base/R-ex/FDist.R lib/R/library/base/R-ex/Formaldehyde.R -lib/R/library/base/R-ex/GammaDist.R -lib/R/library/base/R-ex/Geometric.R lib/R/library/base/R-ex/HairEyeColor.R -lib/R/library/base/R-ex/Hershey.R -lib/R/library/base/R-ex/Hypergeometric.R -lib/R/library/base/R-ex/IQR.R lib/R/library/base/R-ex/InsectSprays.R -lib/R/library/base/R-ex/Japanese.R lib/R/library/base/R-ex/Last.value.R lib/R/library/base/R-ex/LifeCycleSavings.R lib/R/library/base/R-ex/Log.R lib/R/library/base/R-ex/Logic.R -lib/R/library/base/R-ex/Logistic.R -lib/R/library/base/R-ex/Lognormal.R lib/R/library/base/R-ex/Math.R lib/R/library/base/R-ex/Memory.R -lib/R/library/base/R-ex/Multinom.R lib/R/library/base/R-ex/NA.R lib/R/library/base/R-ex/NULL.R -lib/R/library/base/R-ex/NegBinomial.R -lib/R/library/base/R-ex/Normal.R lib/R/library/base/R-ex/OrchardSprays.R lib/R/library/base/R-ex/Paren.R lib/R/library/base/R-ex/PlantGrowth.R lib/R/library/base/R-ex/Platform.R -lib/R/library/base/R-ex/Poisson.R lib/R/library/base/R-ex/Primitive.R lib/R/library/base/R-ex/Random-user.R lib/R/library/base/R-ex/Random.R lib/R/library/base/R-ex/Recall.R lib/R/library/base/R-ex/Round.R -lib/R/library/base/R-ex/Rprof.R -lib/R/library/base/R-ex/SignRank.R lib/R/library/base/R-ex/Special.R lib/R/library/base/R-ex/Startup.R lib/R/library/base/R-ex/Sys.info.R lib/R/library/base/R-ex/Sys.sleep.R lib/R/library/base/R-ex/Sys.time.R -lib/R/library/base/R-ex/TDist.R lib/R/library/base/R-ex/Titanic.R lib/R/library/base/R-ex/ToothGrowth.R -lib/R/library/base/R-ex/Tukey.R -lib/R/library/base/R-ex/TukeyHSD.R lib/R/library/base/R-ex/UCBAdmissions.R lib/R/library/base/R-ex/USArrests.R lib/R/library/base/R-ex/USJudgeRatings.R lib/R/library/base/R-ex/USPersonalExpenditure.R -lib/R/library/base/R-ex/Uniform.R lib/R/library/base/R-ex/VADeaths.R lib/R/library/base/R-ex/Version.R -lib/R/library/base/R-ex/Weibull.R -lib/R/library/base/R-ex/Wilcoxon.R lib/R/library/base/R-ex/abbreviate.R -lib/R/library/base/R-ex/abline.R -lib/R/library/base/R-ex/add1.R -lib/R/library/base/R-ex/aggregate.R lib/R/library/base/R-ex/agrep.R -lib/R/library/base/R-ex/airmiles.R lib/R/library/base/R-ex/airquality.R -lib/R/library/base/R-ex/alias.R lib/R/library/base/R-ex/all.R lib/R/library/base/R-ex/all.equal.R lib/R/library/base/R-ex/allnames.R -lib/R/library/base/R-ex/anova.glm.R -lib/R/library/base/R-ex/anova.lm.R lib/R/library/base/R-ex/anscombe.R lib/R/library/base/R-ex/any.R -lib/R/library/base/R-ex/aov.R lib/R/library/base/R-ex/aperm.R lib/R/library/base/R-ex/append.R lib/R/library/base/R-ex/apply.R lib/R/library/base/R-ex/approxfun.R -lib/R/library/base/R-ex/apropos.R lib/R/library/base/R-ex/args.R lib/R/library/base/R-ex/array.R -lib/R/library/base/R-ex/arrows.R lib/R/library/base/R-ex/as.POSIXlt.R lib/R/library/base/R-ex/as.environment.R lib/R/library/base/R-ex/as.function.R lib/R/library/base/R-ex/assign.R -lib/R/library/base/R-ex/assocplot.R lib/R/library/base/R-ex/attach.R lib/R/library/base/R-ex/attenu.R lib/R/library/base/R-ex/attitude.R lib/R/library/base/R-ex/attr.R lib/R/library/base/R-ex/attributes.R lib/R/library/base/R-ex/autoload.R -lib/R/library/base/R-ex/ave.R -lib/R/library/base/R-ex/axTicks.R -lib/R/library/base/R-ex/axis.POSIXct.R -lib/R/library/base/R-ex/axis.R lib/R/library/base/R-ex/backsolve.R -lib/R/library/base/R-ex/bandwidth.R -lib/R/library/base/R-ex/barplot.R lib/R/library/base/R-ex/basename.R lib/R/library/base/R-ex/bindenv.R -lib/R/library/base/R-ex/birthday.R lib/R/library/base/R-ex/body.R -lib/R/library/base/R-ex/box.R -lib/R/library/base/R-ex/boxplot.R -lib/R/library/base/R-ex/boxplot.stats.R lib/R/library/base/R-ex/bquote.R -lib/R/library/base/R-ex/browseEnv.R -lib/R/library/base/R-ex/bxp.R lib/R/library/base/R-ex/by.R lib/R/library/base/R-ex/c.R lib/R/library/base/R-ex/call.R lib/R/library/base/R-ex/capabilities.R -lib/R/library/base/R-ex/capture.output.R lib/R/library/base/R-ex/cars.R -lib/R/library/base/R-ex/case.names.R lib/R/library/base/R-ex/cat.R lib/R/library/base/R-ex/cbind.R lib/R/library/base/R-ex/char.expand.R lib/R/library/base/R-ex/character.R lib/R/library/base/R-ex/charmatch.R lib/R/library/base/R-ex/chartr.R -lib/R/library/base/R-ex/check.options.R lib/R/library/base/R-ex/chickwts.R lib/R/library/base/R-ex/chol.R lib/R/library/base/R-ex/chol2inv.R lib/R/library/base/R-ex/chull.R lib/R/library/base/R-ex/class.R -lib/R/library/base/R-ex/co2.R lib/R/library/base/R-ex/codes.R -lib/R/library/base/R-ex/coefficients.R lib/R/library/base/R-ex/col.R -lib/R/library/base/R-ex/col2rgb.R lib/R/library/base/R-ex/colSums.R lib/R/library/base/R-ex/colnames.R -lib/R/library/base/R-ex/colors.R lib/R/library/base/R-ex/commandArgs.R lib/R/library/base/R-ex/comment.R -lib/R/library/base/R-ex/complete.cases.R +lib/R/library/base/R-ex/compareVersion.R lib/R/library/base/R-ex/complex.R lib/R/library/base/R-ex/conditions.R -lib/R/library/base/R-ex/confint.R lib/R/library/base/R-ex/conflicts.R lib/R/library/base/R-ex/connections.R -lib/R/library/base/R-ex/constrOptim.R -lib/R/library/base/R-ex/contour.R -lib/R/library/base/R-ex/contrast.R -lib/R/library/base/R-ex/contrasts.R lib/R/library/base/R-ex/converters.R lib/R/library/base/R-ex/convolve.R -lib/R/library/base/R-ex/coplot.R -lib/R/library/base/R-ex/cor.R lib/R/library/base/R-ex/count.fields.R lib/R/library/base/R-ex/crossprod.R lib/R/library/base/R-ex/cumsum.R -lib/R/library/base/R-ex/curve.R lib/R/library/base/R-ex/cut.POSIXt.R lib/R/library/base/R-ex/cut.R lib/R/library/base/R-ex/data.R lib/R/library/base/R-ex/data.class.R lib/R/library/base/R-ex/data.frame.R -lib/R/library/base/R-ex/dataentry.R lib/R/library/base/R-ex/date.R lib/R/library/base/R-ex/dcf.R -lib/R/library/base/R-ex/debugger.R lib/R/library/base/R-ex/delay.R -lib/R/library/base/R-ex/delete.response.R -lib/R/library/base/R-ex/demo.R -lib/R/library/base/R-ex/density.R lib/R/library/base/R-ex/deparse.R -lib/R/library/base/R-ex/deriv.R lib/R/library/base/R-ex/det.R lib/R/library/base/R-ex/detach.R -lib/R/library/base/R-ex/dev.R -lib/R/library/base/R-ex/dev2.R lib/R/library/base/R-ex/diag.R lib/R/library/base/R-ex/diff.R lib/R/library/base/R-ex/difftime.R lib/R/library/base/R-ex/dim.R lib/R/library/base/R-ex/dimnames.R -lib/R/library/base/R-ex/discoveries.R lib/R/library/base/R-ex/do.call.R -lib/R/library/base/R-ex/dotchart.R lib/R/library/base/R-ex/double.R lib/R/library/base/R-ex/dput.R lib/R/library/base/R-ex/drop.R -lib/R/library/base/R-ex/dummy.coef.R lib/R/library/base/R-ex/dump.R lib/R/library/base/R-ex/duplicated.R lib/R/library/base/R-ex/dynload.R -lib/R/library/base/R-ex/edit.R -lib/R/library/base/R-ex/edit.data.frame.R -lib/R/library/base/R-ex/eff.aovlist.R -lib/R/library/base/R-ex/effects.R lib/R/library/base/R-ex/eigen.R lib/R/library/base/R-ex/environment.R lib/R/library/base/R-ex/esoph.R lib/R/library/base/R-ex/euro.R lib/R/library/base/R-ex/eval.R -lib/R/library/base/R-ex/example.R lib/R/library/base/R-ex/exists.R lib/R/library/base/R-ex/expand.grid.R -lib/R/library/base/R-ex/expand.model.frame.R lib/R/library/base/R-ex/expression.R -lib/R/library/base/R-ex/extractAIC.R lib/R/library/base/R-ex/factor.R -lib/R/library/base/R-ex/factor.scope.R lib/R/library/base/R-ex/faithful.R -lib/R/library/base/R-ex/family.R lib/R/library/base/R-ex/fft.R lib/R/library/base/R-ex/file.access.R lib/R/library/base/R-ex/file.info.R lib/R/library/base/R-ex/file.show.R lib/R/library/base/R-ex/files.R -lib/R/library/base/R-ex/filled.contour.R lib/R/library/base/R-ex/findInt.R -lib/R/library/base/R-ex/fivenum.R -lib/R/library/base/R-ex/fix.R lib/R/library/base/R-ex/force.R lib/R/library/base/R-ex/formals.R +lib/R/library/base/R-ex/format.Date.R lib/R/library/base/R-ex/format.R lib/R/library/base/R-ex/format.info.R lib/R/library/base/R-ex/formatDL.R lib/R/library/base/R-ex/formatc.R -lib/R/library/base/R-ex/formula.R -lib/R/library/base/R-ex/fourfoldplot.R -lib/R/library/base/R-ex/freeny.R -lib/R/library/base/R-ex/ftable.R -lib/R/library/base/R-ex/ftable.formula.R lib/R/library/base/R-ex/function.R lib/R/library/base/R-ex/gc.R lib/R/library/base/R-ex/gc.time.R lib/R/library/base/R-ex/get.R -lib/R/library/base/R-ex/getAnywhere.R -lib/R/library/base/R-ex/getFromNamespace.R lib/R/library/base/R-ex/getNativeSymbolInfo.R -lib/R/library/base/R-ex/getS3method.R lib/R/library/base/R-ex/getenv.R lib/R/library/base/R-ex/getpid.R lib/R/library/base/R-ex/getwd.R lib/R/library/base/R-ex/gl.R -lib/R/library/base/R-ex/glm.R -lib/R/library/base/R-ex/glm.control.R -lib/R/library/base/R-ex/gnome.R -lib/R/library/base/R-ex/gray.R lib/R/library/base/R-ex/grep.R -lib/R/library/base/R-ex/grid.R lib/R/library/base/R-ex/groupGeneric.R lib/R/library/base/R-ex/gzcon.R -lib/R/library/base/R-ex/help.R -lib/R/library/base/R-ex/help.search.R -lib/R/library/base/R-ex/help.start.R -lib/R/library/base/R-ex/hist.POSIXt.R -lib/R/library/base/R-ex/hist.R -lib/R/library/base/R-ex/hsv.R lib/R/library/base/R-ex/identical.R lib/R/library/base/R-ex/ifelse.R -lib/R/library/base/R-ex/image.R lib/R/library/base/R-ex/infert.R -lib/R/library/base/R-ex/influence.measures.R lib/R/library/base/R-ex/integer.R -lib/R/library/base/R-ex/integrate.R lib/R/library/base/R-ex/interaction.R -lib/R/library/base/R-ex/interaction.plot.R lib/R/library/base/R-ex/interactive.R lib/R/library/base/R-ex/invisible.R lib/R/library/base/R-ex/iris.R -lib/R/library/base/R-ex/is.empty.R lib/R/library/base/R-ex/is.finite.R lib/R/library/base/R-ex/is.language.R lib/R/library/base/R-ex/is.object.R @@ -1205,38 +1110,20 @@ lib/R/library/base/R-ex/jitter.R lib/R/library/base/R-ex/kappa.R lib/R/library/base/R-ex/kronecker.R lib/R/library/base/R-ex/lapply.R -lib/R/library/base/R-ex/layout.R -lib/R/library/base/R-ex/legend.R lib/R/library/base/R-ex/length.R lib/R/library/base/R-ex/levels.R lib/R/library/base/R-ex/library.R lib/R/library/base/R-ex/library.dynam.R -lib/R/library/base/R-ex/lines.R lib/R/library/base/R-ex/list.R lib/R/library/base/R-ex/list.files.R -lib/R/library/base/R-ex/lm.R -lib/R/library/base/R-ex/lm.influence.R -lib/R/library/base/R-ex/lm.summaries.R -lib/R/library/base/R-ex/lmfit.R lib/R/library/base/R-ex/load.R lib/R/library/base/R-ex/localeconv.R lib/R/library/base/R-ex/locales.R -lib/R/library/base/R-ex/logLik.R -lib/R/library/base/R-ex/logLik.lm.R -lib/R/library/base/R-ex/loglin.R lib/R/library/base/R-ex/longley.R lib/R/library/base/R-ex/lower.tri.R -lib/R/library/base/R-ex/lowess.R lib/R/library/base/R-ex/ls.R -lib/R/library/base/R-ex/ls.diag.R -lib/R/library/base/R-ex/lsfit.R -lib/R/library/base/R-ex/mad.R -lib/R/library/base/R-ex/mahalanobis.R -lib/R/library/base/R-ex/make.link.R lib/R/library/base/R-ex/make.names.R -lib/R/library/base/R-ex/make.socket.R lib/R/library/base/R-ex/make.unique.R -lib/R/library/base/R-ex/makepredictcall.R lib/R/library/base/R-ex/manglePackageName.R lib/R/library/base/R-ex/mapply.R lib/R/library/base/R-ex/margin.table.R @@ -1246,153 +1133,77 @@ lib/R/library/base/R-ex/match.arg.R lib/R/library/base/R-ex/match.call.R lib/R/library/base/R-ex/match.fun.R lib/R/library/base/R-ex/matmult.R -lib/R/library/base/R-ex/matplot.R lib/R/library/base/R-ex/matrix.R lib/R/library/base/R-ex/maxCol.R lib/R/library/base/R-ex/mean.R -lib/R/library/base/R-ex/median.R lib/R/library/base/R-ex/memory.profile.R -lib/R/library/base/R-ex/menu.R lib/R/library/base/R-ex/merge.R -lib/R/library/base/R-ex/methods.R lib/R/library/base/R-ex/missing.R lib/R/library/base/R-ex/mode.R -lib/R/library/base/R-ex/model.extract.R -lib/R/library/base/R-ex/model.frame.R -lib/R/library/base/R-ex/model.matrix.R -lib/R/library/base/R-ex/model.tables.R lib/R/library/base/R-ex/morley.R -lib/R/library/base/R-ex/mosaicplot.R lib/R/library/base/R-ex/mtcars.R -lib/R/library/base/R-ex/mtext.R -lib/R/library/base/R-ex/n2mfrow.R -lib/R/library/base/R-ex/na.action.R -lib/R/library/base/R-ex/na.fail.R lib/R/library/base/R-ex/name.R lib/R/library/base/R-ex/names.R lib/R/library/base/R-ex/nargs.R lib/R/library/base/R-ex/nchar.R lib/R/library/base/R-ex/nextn.R -lib/R/library/base/R-ex/nhtemp.R lib/R/library/base/R-ex/nlevels.R -lib/R/library/base/R-ex/nlm.R lib/R/library/base/R-ex/noquote.R lib/R/library/base/R-ex/notyet.R lib/R/library/base/R-ex/nrow.R lib/R/library/base/R-ex/ns-alt.R lib/R/library/base/R-ex/ns-dblcolon.R lib/R/library/base/R-ex/ns-topenv.R -lib/R/library/base/R-ex/nsl.R lib/R/library/base/R-ex/numeric.R -lib/R/library/base/R-ex/object.size.R lib/R/library/base/R-ex/on.exit.R -lib/R/library/base/R-ex/optim.R -lib/R/library/base/R-ex/optimize.R lib/R/library/base/R-ex/options.R lib/R/library/base/R-ex/order.R lib/R/library/base/R-ex/outer.R -lib/R/library/base/R-ex/p.adjust.R -lib/R/library/base/R-ex/package.contents.R -lib/R/library/base/R-ex/package.skeleton.R -lib/R/library/base/R-ex/packageStatus.R -lib/R/library/base/R-ex/pairs.R -lib/R/library/base/R-ex/palette.R -lib/R/library/base/R-ex/palettes.R -lib/R/library/base/R-ex/panel.smooth.R -lib/R/library/base/R-ex/par.R +lib/R/library/base/R-ex/packageDescription.R lib/R/library/base/R-ex/parse.R lib/R/library/base/R-ex/paste.R lib/R/library/base/R-ex/path.expand.R -lib/R/library/base/R-ex/pdf.R -lib/R/library/base/R-ex/persp.R lib/R/library/base/R-ex/phones.R -lib/R/library/base/R-ex/pictex.R -lib/R/library/base/R-ex/pie.R -lib/R/library/base/R-ex/plot.R -lib/R/library/base/R-ex/plot.dataframe.R -lib/R/library/base/R-ex/plot.design.R -lib/R/library/base/R-ex/plot.lm.R -lib/R/library/base/R-ex/plot.table.R -lib/R/library/base/R-ex/plot.ts.R -lib/R/library/base/R-ex/plot.window.R -lib/R/library/base/R-ex/plot.xy.R -lib/R/library/base/R-ex/plotdefault.R -lib/R/library/base/R-ex/plotfactor.R -lib/R/library/base/R-ex/plotformula.R -lib/R/library/base/R-ex/plothistogram.R -lib/R/library/base/R-ex/plotmath.R lib/R/library/base/R-ex/pmatch.R -lib/R/library/base/R-ex/png.R -lib/R/library/base/R-ex/points.R -lib/R/library/base/R-ex/poly.R -lib/R/library/base/R-ex/polygon.R lib/R/library/base/R-ex/polyroot.R lib/R/library/base/R-ex/pos.to.env.R -lib/R/library/base/R-ex/postscript.R -lib/R/library/base/R-ex/power.R -lib/R/library/base/R-ex/ppoints.R lib/R/library/base/R-ex/precip.R -lib/R/library/base/R-ex/predict.R -lib/R/library/base/R-ex/predict.glm.R -lib/R/library/base/R-ex/predict.lm.R -lib/R/library/base/R-ex/presidents.R lib/R/library/base/R-ex/pressure.R lib/R/library/base/R-ex/pretty.R lib/R/library/base/R-ex/print.R -lib/R/library/base/R-ex/print.coefmat.R lib/R/library/base/R-ex/print.default.R lib/R/library/base/R-ex/print.matrix.R -lib/R/library/base/R-ex/print.ts.R lib/R/library/base/R-ex/proc.time.R lib/R/library/base/R-ex/prod.R -lib/R/library/base/R-ex/proj.R -lib/R/library/base/R-ex/prompt.R -lib/R/library/base/R-ex/promptData.R lib/R/library/base/R-ex/prop.table.R lib/R/library/base/R-ex/pushBack.R lib/R/library/base/R-ex/putenv.R -lib/R/library/base/R-ex/qqnorm.R lib/R/library/base/R-ex/qr.R lib/R/library/base/R-ex/qraux.R lib/R/library/base/R-ex/quakes.R -lib/R/library/base/R-ex/quantile.R lib/R/library/base/R-ex/quit.R lib/R/library/base/R-ex/r2dtable.R lib/R/library/base/R-ex/randu.R lib/R/library/base/R-ex/range.R lib/R/library/base/R-ex/rank.R -lib/R/library/base/R-ex/read.ftable.R -lib/R/library/base/R-ex/read.fwf.R -lib/R/library/base/R-ex/read.socket.R lib/R/library/base/R-ex/readBin.R lib/R/library/base/R-ex/readLines.R lib/R/library/base/R-ex/readline.R -lib/R/library/base/R-ex/recover.R -lib/R/library/base/R-ex/rect.R lib/R/library/base/R-ex/reg.finalizer.R -lib/R/library/base/R-ex/relevel.R lib/R/library/base/R-ex/rep.R -lib/R/library/base/R-ex/replications.R -lib/R/library/base/R-ex/reshape.R lib/R/library/base/R-ex/rev.R -lib/R/library/base/R-ex/rgb.R lib/R/library/base/R-ex/rle.R lib/R/library/base/R-ex/rm.R lib/R/library/base/R-ex/round.POSIXt.R lib/R/library/base/R-ex/row.R lib/R/library/base/R-ex/rowsum.R -lib/R/library/base/R-ex/rug.R lib/R/library/base/R-ex/sQuote.R lib/R/library/base/R-ex/sample.R lib/R/library/base/R-ex/save.R -lib/R/library/base/R-ex/savehistory.R lib/R/library/base/R-ex/scale.R lib/R/library/base/R-ex/scan.R -lib/R/library/base/R-ex/screen.R -lib/R/library/base/R-ex/sd.R -lib/R/library/base/R-ex/se.contrast.R lib/R/library/base/R-ex/search.R -lib/R/library/base/R-ex/segments.R +lib/R/library/base/R-ex/seq.Date.R lib/R/library/base/R-ex/seq.POSIXt.R lib/R/library/base/R-ex/seq.R lib/R/library/base/R-ex/sequence.R @@ -1406,41 +1217,24 @@ lib/R/library/base/R-ex/slice.index.R lib/R/library/base/R-ex/socketSelect.R lib/R/library/base/R-ex/solve.R lib/R/library/base/R-ex/sort.R -lib/R/library/base/R-ex/splinefun.R lib/R/library/base/R-ex/split.R lib/R/library/base/R-ex/sprintf.R lib/R/library/base/R-ex/stack.R lib/R/library/base/R-ex/stackloss.R -lib/R/library/base/R-ex/stars.R -lib/R/library/base/R-ex/stat.anova.R -lib/R/library/base/R-ex/stem.R -lib/R/library/base/R-ex/step.R lib/R/library/base/R-ex/stop.R lib/R/library/base/R-ex/stopifnot.R -lib/R/library/base/R-ex/str.R -lib/R/library/base/R-ex/stripchart.R lib/R/library/base/R-ex/strptime.R lib/R/library/base/R-ex/strsplit.R lib/R/library/base/R-ex/structure.R -lib/R/library/base/R-ex/strwidth.R lib/R/library/base/R-ex/strwrap.R lib/R/library/base/R-ex/subset.R lib/R/library/base/R-ex/substitute.R lib/R/library/base/R-ex/substr.R lib/R/library/base/R-ex/summary.R -lib/R/library/base/R-ex/summary.aov.R -lib/R/library/base/R-ex/summary.glm.R -lib/R/library/base/R-ex/summary.lm.R -lib/R/library/base/R-ex/summary.manova.R -lib/R/library/base/R-ex/summaryRprof.R -lib/R/library/base/R-ex/sunflowerplot.R -lib/R/library/base/R-ex/sunspots.R lib/R/library/base/R-ex/svd.R lib/R/library/base/R-ex/sweep.R lib/R/library/base/R-ex/swiss.R lib/R/library/base/R-ex/switch.R -lib/R/library/base/R-ex/symbols.R -lib/R/library/base/R-ex/symnum.R lib/R/library/base/R-ex/sys.parent.R lib/R/library/base/R-ex/system.R lib/R/library/base/R-ex/system.file.R @@ -1453,49 +1247,31 @@ lib/R/library/base/R-ex/taskCallback.R lib/R/library/base/R-ex/taskCallbackManager.R lib/R/library/base/R-ex/taskCallbackNames.R lib/R/library/base/R-ex/tempfile.R -lib/R/library/base/R-ex/termplot.R -lib/R/library/base/R-ex/text.R lib/R/library/base/R-ex/textconnections.R -lib/R/library/base/R-ex/time.R -lib/R/library/base/R-ex/title.R lib/R/library/base/R-ex/toString.R lib/R/library/base/R-ex/trace.R lib/R/library/base/R-ex/traceback.R lib/R/library/base/R-ex/transform.R lib/R/library/base/R-ex/trees.R lib/R/library/base/R-ex/try.R -lib/R/library/base/R-ex/ts.R lib/R/library/base/R-ex/typeof.R lib/R/library/base/R-ex/unique.R -lib/R/library/base/R-ex/uniroot.R lib/R/library/base/R-ex/units.R lib/R/library/base/R-ex/unlist.R lib/R/library/base/R-ex/unname.R -lib/R/library/base/R-ex/update.R -lib/R/library/base/R-ex/update.formula.R -lib/R/library/base/R-ex/update.packages.R -lib/R/library/base/R-ex/url.show.R -lib/R/library/base/R-ex/uspop.R +lib/R/library/base/R-ex/userhooks.R lib/R/library/base/R-ex/vector.R -lib/R/library/base/R-ex/vignette.R lib/R/library/base/R-ex/volcano.R lib/R/library/base/R-ex/warning.R lib/R/library/base/R-ex/warnings.R lib/R/library/base/R-ex/warpbreaks.R lib/R/library/base/R-ex/weekday.POSIXt.R -lib/R/library/base/R-ex/weighted.mean.R -lib/R/library/base/R-ex/weighted.residuals.R lib/R/library/base/R-ex/which.R lib/R/library/base/R-ex/which.min.R -lib/R/library/base/R-ex/window.R lib/R/library/base/R-ex/with.R lib/R/library/base/R-ex/women.R lib/R/library/base/R-ex/write.R lib/R/library/base/R-ex/write.table.R -lib/R/library/base/R-ex/xtabs.R -lib/R/library/base/R-ex/xy.coords.R -lib/R/library/base/R-ex/xyz.coords.R -lib/R/library/base/R-ex/zC.R lib/R/library/base/R-ex/zMachine.R lib/R/library/base/R-ex/zScript.R lib/R/library/base/R/Rprofile @@ -1513,20 +1289,16 @@ lib/R/library/base/data/USArrests.tab lib/R/library/base/data/USJudgeRatings.R lib/R/library/base/data/USPersonalExpenditure.R lib/R/library/base/data/VADeaths.R -lib/R/library/base/data/airmiles.R lib/R/library/base/data/airquality.tab lib/R/library/base/data/anscombe.R lib/R/library/base/data/attenu.R lib/R/library/base/data/attitude.R lib/R/library/base/data/cars.R lib/R/library/base/data/chickwts.R -lib/R/library/base/data/co2.R -lib/R/library/base/data/discoveries.R lib/R/library/base/data/esoph.R lib/R/library/base/data/euro.R lib/R/library/base/data/eurodist.R lib/R/library/base/data/faithful.R -lib/R/library/base/data/freeny.R lib/R/library/base/data/infert.R lib/R/library/base/data/iris.R lib/R/library/base/data/iris3.R @@ -1534,10 +1306,8 @@ lib/R/library/base/data/islands.R lib/R/library/base/data/longley.R lib/R/library/base/data/morley.tab lib/R/library/base/data/mtcars.R -lib/R/library/base/data/nhtemp.R lib/R/library/base/data/phones.R lib/R/library/base/data/precip.R -lib/R/library/base/data/presidents.R lib/R/library/base/data/pressure.R lib/R/library/base/data/quakes.tab lib/R/library/base/data/randu.R @@ -1545,95 +1315,55 @@ lib/R/library/base/data/rivers.R lib/R/library/base/data/sleep.R lib/R/library/base/data/stackloss.R lib/R/library/base/data/state.R -lib/R/library/base/data/sunspots.R lib/R/library/base/data/swiss.tab lib/R/library/base/data/trees.R -lib/R/library/base/data/uspop.R lib/R/library/base/data/volcano.R lib/R/library/base/data/warpbreaks.R lib/R/library/base/data/women.R lib/R/library/base/demo/00Index -lib/R/library/base/demo/Hershey.R -lib/R/library/base/demo/Japanese.R -lib/R/library/base/demo/glm.vr.R -lib/R/library/base/demo/graphics.R -lib/R/library/base/demo/image.R lib/R/library/base/demo/is.things.R -lib/R/library/base/demo/lm.glm.R -lib/R/library/base/demo/nlm.R -lib/R/library/base/demo/persp.R -lib/R/library/base/demo/plotmath.R lib/R/library/base/demo/recursion.R lib/R/library/base/demo/scoping.R -lib/R/library/base/help/AIC lib/R/library/base/help/AnIndex lib/R/library/base/help/Arithmetic lib/R/library/base/help/AsIs -lib/R/library/base/help/BATCH lib/R/library/base/help/Bessel -lib/R/library/base/help/Beta -lib/R/library/base/help/Binomial -lib/R/library/base/help/COMPILE -lib/R/library/base/help/Cauchy -lib/R/library/base/help/Chisquare lib/R/library/base/help/Comparison lib/R/library/base/help/Constants lib/R/library/base/help/Control lib/R/library/base/help/DateTimeClasses +lib/R/library/base/help/Dates lib/R/library/base/help/Defunct lib/R/library/base/help/Deprecated -lib/R/library/base/help/Devices -lib/R/library/base/help/Exponential lib/R/library/base/help/Extract lib/R/library/base/help/Extract.data.frame lib/R/library/base/help/Extract.factor lib/R/library/base/help/Extremes -lib/R/library/base/help/FDist lib/R/library/base/help/Foreign lib/R/library/base/help/Formaldehyde -lib/R/library/base/help/GammaDist -lib/R/library/base/help/Geometric lib/R/library/base/help/HairEyeColor -lib/R/library/base/help/Hershey lib/R/library/base/help/Hyperbolic -lib/R/library/base/help/Hypergeometric -lib/R/library/base/help/INSTALL -lib/R/library/base/help/IQR lib/R/library/base/help/InsectSprays lib/R/library/base/help/Internal -lib/R/library/base/help/Japanese -lib/R/library/base/help/LINK lib/R/library/base/help/Last.value lib/R/library/base/help/LifeCycleSavings lib/R/library/base/help/Log lib/R/library/base/help/Logic -lib/R/library/base/help/Logistic -lib/R/library/base/help/Lognormal lib/R/library/base/help/Math lib/R/library/base/help/Memory -lib/R/library/base/help/Multinom lib/R/library/base/help/NA lib/R/library/base/help/NULL -lib/R/library/base/help/NegBinomial -lib/R/library/base/help/Normal lib/R/library/base/help/OrchardSprays lib/R/library/base/help/Paren -lib/R/library/base/help/PkgUtils lib/R/library/base/help/PlantGrowth lib/R/library/base/help/Platform -lib/R/library/base/help/Poisson lib/R/library/base/help/Primitive -lib/R/library/base/help/REMOVE -lib/R/library/base/help/RHOME lib/R/library/base/help/Random lib/R/library/base/help/Random-user lib/R/library/base/help/RdUtils lib/R/library/base/help/Recall lib/R/library/base/help/Rhome lib/R/library/base/help/Round -lib/R/library/base/help/Rprof -lib/R/library/base/help/SHLIB -lib/R/library/base/help/SignRank lib/R/library/base/help/Signals lib/R/library/base/help/Special lib/R/library/base/help/Startup @@ -1641,194 +1371,122 @@ lib/R/library/base/help/Syntax lib/R/library/base/help/Sys.info lib/R/library/base/help/Sys.sleep lib/R/library/base/help/Sys.time -lib/R/library/base/help/TDist lib/R/library/base/help/Titanic lib/R/library/base/help/ToothGrowth lib/R/library/base/help/Trig -lib/R/library/base/help/Tukey -lib/R/library/base/help/TukeyHSD lib/R/library/base/help/UCBAdmissions lib/R/library/base/help/USArrests lib/R/library/base/help/USJudgeRatings lib/R/library/base/help/USPersonalExpenditure -lib/R/library/base/help/Uniform lib/R/library/base/help/UseMethod lib/R/library/base/help/VADeaths lib/R/library/base/help/Version -lib/R/library/base/help/Weibull -lib/R/library/base/help/Wilcoxon lib/R/library/base/help/abbreviate -lib/R/library/base/help/abline -lib/R/library/base/help/add1 -lib/R/library/base/help/aggregate lib/R/library/base/help/agrep -lib/R/library/base/help/airmiles lib/R/library/base/help/airquality -lib/R/library/base/help/alias lib/R/library/base/help/all lib/R/library/base/help/all.equal lib/R/library/base/help/allnames -lib/R/library/base/help/anova -lib/R/library/base/help/anova.glm -lib/R/library/base/help/anova.lm lib/R/library/base/help/anscombe lib/R/library/base/help/any -lib/R/library/base/help/aov lib/R/library/base/help/aperm lib/R/library/base/help/append lib/R/library/base/help/apply lib/R/library/base/help/approxfun -lib/R/library/base/help/apropos lib/R/library/base/help/args lib/R/library/base/help/array -lib/R/library/base/help/arrows lib/R/library/base/help/as.POSIXlt lib/R/library/base/help/as.data.frame lib/R/library/base/help/as.environment lib/R/library/base/help/as.function lib/R/library/base/help/assign lib/R/library/base/help/assignOps -lib/R/library/base/help/assocplot lib/R/library/base/help/attach lib/R/library/base/help/attenu lib/R/library/base/help/attitude lib/R/library/base/help/attr lib/R/library/base/help/attributes lib/R/library/base/help/autoload -lib/R/library/base/help/ave -lib/R/library/base/help/axTicks -lib/R/library/base/help/axis -lib/R/library/base/help/axis.POSIXct lib/R/library/base/help/backsolve -lib/R/library/base/help/bandwidth -lib/R/library/base/help/barplot lib/R/library/base/help/basename lib/R/library/base/help/bindenv -lib/R/library/base/help/birthday lib/R/library/base/help/body -lib/R/library/base/help/box -lib/R/library/base/help/boxplot -lib/R/library/base/help/boxplot.stats lib/R/library/base/help/bquote -lib/R/library/base/help/browseEnv -lib/R/library/base/help/browseURL lib/R/library/base/help/browser -lib/R/library/base/help/bug.report lib/R/library/base/help/builtins -lib/R/library/base/help/bxp lib/R/library/base/help/by lib/R/library/base/help/c lib/R/library/base/help/call lib/R/library/base/help/capabilities -lib/R/library/base/help/capture.output lib/R/library/base/help/cars -lib/R/library/base/help/case.names 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-lib/R/library/base/help/eff.aovlist -lib/R/library/base/help/effects lib/R/library/base/help/eigen lib/R/library/base/help/environment lib/R/library/base/help/esoph lib/R/library/base/help/euro lib/R/library/base/help/eurodist lib/R/library/base/help/eval -lib/R/library/base/help/example lib/R/library/base/help/exists lib/R/library/base/help/expand.grid -lib/R/library/base/help/expand.model.frame lib/R/library/base/help/expression -lib/R/library/base/help/extractAIC lib/R/library/base/help/factor -lib/R/library/base/help/factor.scope lib/R/library/base/help/faithful -lib/R/library/base/help/family lib/R/library/base/help/fft lib/R/library/base/help/file.access lib/R/library/base/help/file.choose @@ -1836,66 +1494,36 @@ lib/R/library/base/help/file.info lib/R/library/base/help/file.path lib/R/library/base/help/file.show lib/R/library/base/help/files -lib/R/library/base/help/filled.contour lib/R/library/base/help/findInt -lib/R/library/base/help/fitted.values -lib/R/library/base/help/fivenum -lib/R/library/base/help/fix lib/R/library/base/help/force lib/R/library/base/help/formals lib/R/library/base/help/format +lib/R/library/base/help/format.Date lib/R/library/base/help/format.info lib/R/library/base/help/formatDL lib/R/library/base/help/formatc -lib/R/library/base/help/formula -lib/R/library/base/help/fourfoldplot -lib/R/library/base/help/frame -lib/R/library/base/help/freeny -lib/R/library/base/help/ftable -lib/R/library/base/help/ftable.formula lib/R/library/base/help/function lib/R/library/base/help/gc lib/R/library/base/help/gc.time lib/R/library/base/help/gctorture lib/R/library/base/help/get -lib/R/library/base/help/getAnywhere -lib/R/library/base/help/getFromNamespace lib/R/library/base/help/getNativeSymbolInfo -lib/R/library/base/help/getS3method lib/R/library/base/help/getenv lib/R/library/base/help/getpid lib/R/library/base/help/getwd lib/R/library/base/help/gl -lib/R/library/base/help/glm -lib/R/library/base/help/glm.control 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lib/R/library/base/help/is.function lib/R/library/base/help/is.language @@ -1909,47 +1537,23 @@ lib/R/library/base/help/kappa lib/R/library/base/help/kronecker lib/R/library/base/help/labels lib/R/library/base/help/lapply -lib/R/library/base/help/layout -lib/R/library/base/help/legend lib/R/library/base/help/length lib/R/library/base/help/levels lib/R/library/base/help/library lib/R/library/base/help/library.dynam lib/R/library/base/help/license -lib/R/library/base/help/lines lib/R/library/base/help/list lib/R/library/base/help/list.files -lib/R/library/base/help/lm -lib/R/library/base/help/lm.influence -lib/R/library/base/help/lm.summaries -lib/R/library/base/help/lmfit lib/R/library/base/help/load lib/R/library/base/help/localeconv lib/R/library/base/help/locales -lib/R/library/base/help/locator -lib/R/library/base/help/logLik -lib/R/library/base/help/logLik.glm -lib/R/library/base/help/logLik.lm lib/R/library/base/help/logical -lib/R/library/base/help/loglin 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lib/R/library/base/help/serialize @@ -2147,45 +1663,27 @@ lib/R/library/base/help/socketSelect lib/R/library/base/help/solve lib/R/library/base/help/sort lib/R/library/base/help/source -lib/R/library/base/help/splinefun lib/R/library/base/help/split lib/R/library/base/help/sprintf lib/R/library/base/help/stack lib/R/library/base/help/stackloss lib/R/library/base/help/standardGeneric -lib/R/library/base/help/stars -lib/R/library/base/help/start -lib/R/library/base/help/stat.anova lib/R/library/base/help/state -lib/R/library/base/help/stem -lib/R/library/base/help/step lib/R/library/base/help/stop lib/R/library/base/help/stopifnot -lib/R/library/base/help/str -lib/R/library/base/help/stripchart lib/R/library/base/help/strptime lib/R/library/base/help/strsplit lib/R/library/base/help/structure -lib/R/library/base/help/strwidth lib/R/library/base/help/strwrap lib/R/library/base/help/subset lib/R/library/base/help/substitute lib/R/library/base/help/substr lib/R/library/base/help/sum 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-7768,22 +7924,22 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/share/R @dirrm lib/R/share @dirrm lib/R/modules -@dirrm lib/R/library/ts/man -@dirrm lib/R/library/ts/libs -@dirrm lib/R/library/ts/latex -@dirrm lib/R/library/ts/html -@dirrm lib/R/library/ts/help -@dirrm lib/R/library/ts/data -@dirrm lib/R/library/ts/R-ex +@dirrm lib/R/library/utils/man +@dirrm lib/R/library/utils/latex +@dirrm lib/R/library/utils/html +@dirrm lib/R/library/utils/help +@dirrm lib/R/library/utils/Sweave +@dirrm lib/R/library/utils/R-ex +@dirrm lib/R/library/utils/R +@dirrm lib/R/library/utils/Meta +@dirrm lib/R/library/utils @dirrm lib/R/library/ts/R -@dirrm lib/R/library/ts/Meta @dirrm lib/R/library/ts @dirrm lib/R/library/tools/man @dirrm lib/R/library/tools/libs @dirrm lib/R/library/tools/latex @dirrm lib/R/library/tools/html @dirrm lib/R/library/tools/help -@dirrm lib/R/library/tools/Sweave @dirrm lib/R/library/tools/R-ex @dirrm lib/R/library/tools/R @dirrm lib/R/library/tools/Meta @@ -7809,14 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+@dirrm lib/R/library/stats @dirrm lib/R/library/splines/man @dirrm lib/R/library/splines/libs @dirrm lib/R/library/splines/latex @@ -7855,15 +8024,7 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/nnet/R @dirrm lib/R/library/nnet/Meta @dirrm lib/R/library/nnet -@dirrm lib/R/library/nls/man -@dirrm lib/R/library/nls/libs -@dirrm lib/R/library/nls/latex -@dirrm lib/R/library/nls/html -@dirrm lib/R/library/nls/help -@dirrm lib/R/library/nls/data -@dirrm lib/R/library/nls/R-ex @dirrm lib/R/library/nls/R -@dirrm lib/R/library/nls/Meta @dirrm lib/R/library/nls @dirrm lib/R/library/nlme/scripts @dirrm lib/R/library/nlme/mlbook @@ -7877,33 +8038,11 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/nlme/R @dirrm lib/R/library/nlme/Meta @dirrm lib/R/library/nlme -@dirrm lib/R/library/mva/man -@dirrm lib/R/library/mva/libs -@dirrm lib/R/library/mva/latex -@dirrm lib/R/library/mva/html -@dirrm lib/R/library/mva/help -@dirrm lib/R/library/mva/data -@dirrm lib/R/library/mva/R-ex @dirrm lib/R/library/mva/R -@dirrm lib/R/library/mva/Meta @dirrm lib/R/library/mva -@dirrm lib/R/library/modreg/man -@dirrm lib/R/library/modreg/libs -@dirrm lib/R/library/modreg/latex -@dirrm lib/R/library/modreg/html -@dirrm lib/R/library/modreg/help -@dirrm lib/R/library/modreg/data -@dirrm lib/R/library/modreg/R-ex @dirrm lib/R/library/modreg/R -@dirrm lib/R/library/modreg/Meta @dirrm lib/R/library/modreg -@dirrm lib/R/library/mle/man -@dirrm lib/R/library/mle/latex -@dirrm lib/R/library/mle/html -@dirrm lib/R/library/mle/help -@dirrm lib/R/library/mle/R-ex @dirrm lib/R/library/mle/R -@dirrm lib/R/library/mle/Meta @dirrm lib/R/library/mle @dirrm lib/R/library/mgcv/man @dirrm lib/R/library/mgcv/libs @@ -7923,14 +8062,7 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/methods/R @dirrm lib/R/library/methods/Meta @dirrm lib/R/library/methods -@dirrm lib/R/library/lqs/man -@dirrm lib/R/library/lqs/libs -@dirrm lib/R/library/lqs/latex -@dirrm lib/R/library/lqs/html -@dirrm lib/R/library/lqs/help -@dirrm lib/R/library/lqs/R-ex @dirrm lib/R/library/lqs/R -@dirrm lib/R/library/lqs/Meta @dirrm lib/R/library/lqs @dirrm lib/R/library/lattice/man @dirrm lib/R/library/lattice/libs @@ -7953,6 +8085,15 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/grid/R @dirrm lib/R/library/grid/Meta @dirrm lib/R/library/grid +@dirrm lib/R/library/graphics/man +@dirrm lib/R/library/graphics/latex +@dirrm lib/R/library/graphics/html +@dirrm lib/R/library/graphics/help +@dirrm lib/R/library/graphics/demo +@dirrm lib/R/library/graphics/R-ex +@dirrm lib/R/library/graphics/R +@dirrm lib/R/library/graphics/Meta +@dirrm lib/R/library/graphics @dirrm lib/R/library/foreign/man @dirrm lib/R/library/foreign/libs @dirrm lib/R/library/foreign/latex @@ -7962,24 +8103,9 @@ lib/R/share/texmf/upquote.sty @dirrm lib/R/library/foreign/R @dirrm lib/R/library/foreign/Meta @dirrm lib/R/library/foreign -@dirrm lib/R/library/eda/man -@dirrm lib/R/library/eda/libs -@dirrm lib/R/library/eda/latex -@dirrm lib/R/library/eda/html -@dirrm lib/R/library/eda/help -@dirrm lib/R/library/eda/demo -@dirrm lib/R/library/eda/R-ex @dirrm lib/R/library/eda/R -@dirrm lib/R/library/eda/Meta @dirrm lib/R/library/eda -@dirrm lib/R/library/ctest/man -@dirrm lib/R/library/ctest/libs -@dirrm lib/R/library/ctest/latex -@dirrm lib/R/library/ctest/html -@dirrm lib/R/library/ctest/help -@dirrm lib/R/library/ctest/R-ex @dirrm lib/R/library/ctest/R -@dirrm lib/R/library/ctest/Meta @dirrm lib/R/library/ctest @dirrm lib/R/library/cluster/man @dirrm lib/R/library/cluster/libs |