diff options
Diffstat (limited to 'science/py-DendroPy')
| -rw-r--r-- | science/py-DendroPy/Makefile | 20 | ||||
| -rw-r--r-- | science/py-DendroPy/distinfo | 3 | ||||
| -rw-r--r-- | science/py-DendroPy/files/patch-setup.py | 15 | ||||
| -rw-r--r-- | science/py-DendroPy/pkg-descr | 4 | ||||
| -rw-r--r-- | science/py-DendroPy/pkg-plist | 317 |
5 files changed, 359 insertions, 0 deletions
diff --git a/science/py-DendroPy/Makefile b/science/py-DendroPy/Makefile new file mode 100644 index 000000000000..1e135426a9f1 --- /dev/null +++ b/science/py-DendroPy/Makefile @@ -0,0 +1,20 @@ +# New ports collection makefile for: py-DendroPy +# Date created: 09 Jan, 2010 +# Whom: Wen Heping <wenheping@gmail.com> +# +# $FreeBSD$ +# + +PORTNAME= DendroPy +PORTVERSION= 3.0.2 +CATEGORIES= science python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= wen@FreeBSD.org +COMMENT= Phylogenetic computing library + +USE_PYTHON= yes +USE_PYDISTUTILS= easy_install + +.include <bsd.port.mk> diff --git a/science/py-DendroPy/distinfo b/science/py-DendroPy/distinfo new file mode 100644 index 000000000000..18f87fab87eb --- /dev/null +++ b/science/py-DendroPy/distinfo @@ -0,0 +1,3 @@ +MD5 (DendroPy-3.0.2.tar.gz) = d1e44937e5171fe864864f6cb8e629c1 +SHA256 (DendroPy-3.0.2.tar.gz) = 99304b4611f38da96370ca6470847e20a0ff01f78320438a872fdcebdb41f621 +SIZE (DendroPy-3.0.2.tar.gz) = 2233110 diff --git a/science/py-DendroPy/files/patch-setup.py b/science/py-DendroPy/files/patch-setup.py new file mode 100644 index 000000000000..455b04d52f80 --- /dev/null +++ b/science/py-DendroPy/files/patch-setup.py @@ -0,0 +1,15 @@ +--- setup.py.orig 2010-01-09 13:22:53.000000000 +0800 ++++ setup.py 2010-01-09 13:23:15.000000000 +0800 +@@ -28,9 +28,9 @@ + import os + + try: +- import ez_setup +- sys.stderr.write("using ez_setup ('%s')\n" % os.path.abspath(ez_setup.__file__)) +- ez_setup.use_setuptools() ++# import ez_setup ++# sys.stderr.write("using ez_setup ('%s')\n" % os.path.abspath(ez_setup.__file__)) ++# ez_setup.use_setuptools() + import setuptools + sys.stderr.write("using setuptools ('%s')\n" % os.path.abspath(setuptools.__file__)) + from setuptools import setup, find_packages diff --git a/science/py-DendroPy/pkg-descr b/science/py-DendroPy/pkg-descr new file mode 100644 index 000000000000..5abea6fe958c --- /dev/null +++ b/science/py-DendroPy/pkg-descr @@ -0,0 +1,4 @@ +py-DendroPy is a python library for phylogenetic scripting, +simulation, data processing and manipulation. + +WWW: http://packages.python.org/DendroPy/ diff --git a/science/py-DendroPy/pkg-plist b/science/py-DendroPy/pkg-plist new file mode 100644 index 000000000000..d36cf1d5b021 --- /dev/null +++ b/science/py-DendroPy/pkg-plist @@ -0,0 +1,317 @@ +bin/cattrees.py +bin/long_branch_symmdiff.py +bin/strict_consensus_merge.py +bin/sumtrees.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/PKG-INFO +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/SOURCES.txt +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/dependency_links.txt +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/not-zip-safe +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/requires.txt +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/scripts/cattrees.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/scripts/long_branch_symmdiff.py 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