diff options
Diffstat (limited to 'science')
| -rw-r--r-- | science/Makefile | 1 | ||||
| -rw-r--r-- | science/hdf5-18/Makefile | 73 | ||||
| -rw-r--r-- | science/hdf5-18/distinfo | 2 | ||||
| -rw-r--r-- | science/hdf5-18/files/patch-src-H5FDdirect.c | 11 | ||||
| -rw-r--r-- | science/hdf5-18/pkg-descr | 16 | ||||
| -rw-r--r-- | science/hdf5-18/pkg-plist | 236 |
6 files changed, 0 insertions, 339 deletions
diff --git a/science/Makefile b/science/Makefile index e4e7377b126b..66b5773a0f39 100644 --- a/science/Makefile +++ b/science/Makefile @@ -70,7 +70,6 @@ SUBDIR += hdf SUBDIR += hdf-java SUBDIR += hdf5 - SUBDIR += hdf5-18 SUBDIR += hs-bio SUBDIR += isaac-cfd SUBDIR += jmol diff --git a/science/hdf5-18/Makefile b/science/hdf5-18/Makefile deleted file mode 100644 index 902a7371e03c..000000000000 --- a/science/hdf5-18/Makefile +++ /dev/null @@ -1,73 +0,0 @@ -# Created by: Wen Heping <wenheping@gmail.com> -# $FreeBSD$ - -PORTNAME= hdf5 -PORTVERSION= 1.8.10 -PORTREVISION= 2 -CATEGORIES= science archivers graphics -MASTER_SITES= http://www.hdfgroup.org/ftp/HDF5/current/src/ \ - ftp://ftp.hdfgroup.org/HDF5/current/src/ \ - http://www.hdfgroup.org/ftp/HDF5/releases/${DISTNAME}/src/ \ - ftp://ftp.hdfgroup.org/HDF5/releases/${DISTNAME}/src/ -DISTNAME= ${PORTNAME}-${PORTVERSION}-patch1 -PKGNAMESUFFIX= -18 - -MAINTAINER= sunpoet@FreeBSD.org -COMMENT= Hierarchical Data Format library (from NCSA) - -OPTIONS_DEFINE= DEBUG EXAMPLES FORTRAN SZIP - -CONFLICTS_INSTALL= hdf-4.[0-9]* hdf5-1.6.[0-9]* - -USES= libtool:keepla tar:bzip2 -USE_LDCONFIG= yes -GNU_CONFIGURE= yes -CONFIGURE_ARGS= --enable-cxx \ - --enable-instrument \ - --enable-strict-format-checks \ - --with-pthread=/usr \ - --with-zlib=/usr - -.include <bsd.port.options.mk> - -.if ${PORT_OPTIONS:MDEBUG} -CONFIGURE_ARGS+=--disable-production --enable-debug=all -.endif - -.if ${PORT_OPTIONS:MFORTRAN} -USES+= fortran -CONFIGURE_ARGS+=--enable-fortran -CONFIGURE_ENV+= F9X=${FC} -PLIST_SUB+= FORTRAN="" -.else -PLIST_SUB+= FORTRAN="@comment " -.endif - -.if ${PORT_OPTIONS:MSZIP} -LIB_DEPENDS+= libsz.so:${PORTSDIR}/science/szip -CONFIGURE_ARGS+=--with-szlib=${LOCALBASE} -.endif - -.include <bsd.port.pre.mk> - -.if ${ARCH} == "sparc64" -BROKEN= Does not compile on ${ARCH} -.endif - -post-patch: - @${REINPLACE_CMD} -e 's|-lpthread|${PTHREAD_LIBS}|g' ${WRKSRC}/configure - @${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/config/gnu-flags - @${REINPLACE_CMD} \ - -e '/LD_LIBRARY_PATH/ s|^|#|' \ - -e 's|/share/hdf5_examples|/${EXAMPLESDIR_REL}|' \ - -e 's|(INSTALL)|(INSTALL_DATA)|' \ - `${FIND} ${WRKSRC} -regex '.*/examples/Makefile.in'` - @${REINPLACE_CMD} -e 's|\[ -a|\[ -f|g' `${FIND} ${WRKSRC} -name \*.sh\*` -.if !${PORT_OPTIONS:MEXAMPLES} - @${REINPLACE_CMD} -e '/^install:/ s|install-examples||' ${WRKSRC}/Makefile.in -.endif - -regression-test test: build - cd ${WRKSRC}/ && ${SETENV} ${MAKE_ENV} ${MAKE} check - -.include <bsd.port.post.mk> diff --git a/science/hdf5-18/distinfo b/science/hdf5-18/distinfo deleted file mode 100644 index f046f98d42eb..000000000000 --- a/science/hdf5-18/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -SHA256 (hdf5-1.8.10-patch1.tar.bz2) = 292afb3615ad9e68f4d5d18ebb11e4a73f2aece39f2da3875a457ff1e109fc41 -SIZE (hdf5-1.8.10-patch1.tar.bz2) = 6010792 diff --git a/science/hdf5-18/files/patch-src-H5FDdirect.c b/science/hdf5-18/files/patch-src-H5FDdirect.c deleted file mode 100644 index 037b8f01e044..000000000000 --- a/science/hdf5-18/files/patch-src-H5FDdirect.c +++ /dev/null @@ -1,11 +0,0 @@ ---- ./src/H5FDdirect.c.orig 2011-11-07 14:11:30.000000000 -0800 -+++ ./src/H5FDdirect.c 2011-12-21 16:50:03.000000000 -0800 -@@ -29,6 +29,8 @@ - * this file. */ - /* #define _XOPEN_SOURCE 600 */ - -+#define O_DIRECT 0x00010000 -+ - #include "H5private.h" /* Generic Functions */ - #include "H5Eprivate.h" /* Error handling */ - #include "H5Fprivate.h" /* File access */ diff --git a/science/hdf5-18/pkg-descr b/science/hdf5-18/pkg-descr deleted file mode 100644 index 2e3e3061d5c7..000000000000 --- a/science/hdf5-18/pkg-descr +++ /dev/null @@ -1,16 +0,0 @@ -HDF5 is a completely new Hierarchical Data Format product consisting of a data -format specification and a supporting library implementation. HDF5 is designed -to address some of the limitations of the older HDF product and to address -current and anticipated requirements of modern systems and applications. - -HDF5 includes the following improvements: -- A new file format designed to address some of the deficiencies of HDF4.x, - particularly the need to store larger files and more objects per file. -- A simpler, more comprehensive data model that includes only two basic - structures: a multidimensional array of record structures, and a grouping - structure. -- A simpler, better-engineered library and API, with improved support for - parallel I/O, threads, and other requirements imposed by modern systems - and applications. - -WWW: http://www.hdfgroup.org/HDF5/ diff --git a/science/hdf5-18/pkg-plist b/science/hdf5-18/pkg-plist deleted file mode 100644 index 9e9237f285f0..000000000000 --- a/science/hdf5-18/pkg-plist +++ /dev/null @@ -1,236 +0,0 @@ -bin/gif2h5 -bin/h52gif -bin/h5c++ -bin/h5cc -bin/h5copy -bin/h5debug -bin/h5diff -bin/h5dump -%%FORTRAN%%bin/h5fc -bin/h5import -bin/h5jam -bin/h5ls -bin/h5mkgrp -bin/h5perf_serial -bin/h5redeploy -bin/h5repack -bin/h5repart -bin/h5stat -bin/h5unjam -include/H5ACpublic.h -include/H5AbstractDs.h -include/H5Apublic.h -include/H5ArrayType.h -include/H5AtomType.h -include/H5Attribute.h -include/H5Classes.h -include/H5CommonFG.h -include/H5CompType.h -include/H5Cpp.h -include/H5CppDoc.h -include/H5Cpublic.h -include/H5DSpublic.h -include/H5DataSet.h -include/H5DataSpace.h -include/H5DataType.h -include/H5DcreatProp.h -include/H5Dpublic.h -include/H5DxferProp.h -include/H5EnumType.h -include/H5Epubgen.h -include/H5Epublic.h -include/H5Exception.h -include/H5FDcore.h -include/H5FDdirect.h -include/H5FDfamily.h -include/H5FDlog.h -include/H5FDmpi.h -include/H5FDmpio.h -include/H5FDmpiposix.h -include/H5FDmulti.h -include/H5FDpublic.h -include/H5FDsec2.h -include/H5FDstdio.h -include/H5FaccProp.h -include/H5FcreatProp.h -include/H5File.h -include/H5FloatType.h -include/H5Fpublic.h -include/H5Gpublic.h -include/H5Group.h -include/H5IMpublic.h -include/H5IdComponent.h -include/H5Include.h -include/H5IntType.h -include/H5Ipublic.h -include/H5LTpublic.h -include/H5Library.h -include/H5Lpublic.h -include/H5MMpublic.h -include/H5Object.h -include/H5Opublic.h -include/H5PTpublic.h -include/H5PacketTable.h -include/H5Ppublic.h -include/H5PredType.h -include/H5PropList.h -include/H5Rpublic.h -include/H5Spublic.h -include/H5StrType.h -include/H5TBpublic.h -include/H5Tpublic.h -include/H5VarLenType.h -include/H5Zpublic.h -include/H5api_adpt.h -%%FORTRAN%%include/H5f90i.h -%%FORTRAN%%include/H5f90i_gen.h -include/H5overflow.h -include/H5pubconf.h -include/H5public.h -include/H5version.h -%%FORTRAN%%include/h5_dble_interface.mod -%%FORTRAN%%include/h5a.mod -%%FORTRAN%%include/h5a_provisional.mod -%%FORTRAN%%include/h5d.mod -%%FORTRAN%%include/h5d_provisional.mod -%%FORTRAN%%include/h5ds.mod -%%FORTRAN%%include/h5e.mod -%%FORTRAN%%include/h5e_provisional.mod -%%FORTRAN%%include/h5f.mod -%%FORTRAN%%include/h5fortran_types.mod -%%FORTRAN%%include/h5g.mod -%%FORTRAN%%include/h5global.mod -%%FORTRAN%%include/h5i.mod -%%FORTRAN%%include/h5im.mod -%%FORTRAN%%include/h5l.mod -%%FORTRAN%%include/h5l_provisional.mod -%%FORTRAN%%include/h5lib.mod -%%FORTRAN%%include/h5lib_provisional.mod -%%FORTRAN%%include/h5lt.mod -%%FORTRAN%%include/h5o.mod -%%FORTRAN%%include/h5o_provisional.mod -%%FORTRAN%%include/h5p.mod -%%FORTRAN%%include/h5p_provisional.mod -%%FORTRAN%%include/h5r.mod -%%FORTRAN%%include/h5r_provisional.mod -%%FORTRAN%%include/h5s.mod -%%FORTRAN%%include/h5t.mod -%%FORTRAN%%include/h5t_provisional.mod -%%FORTRAN%%include/h5tb.mod -%%FORTRAN%%include/h5z.mod -include/hdf5.h -%%FORTRAN%%include/hdf5.mod -include/hdf5_hl.h -lib/libhdf5.a -lib/libhdf5.la -lib/libhdf5.settings -lib/libhdf5.so -lib/libhdf5.so.7 -lib/libhdf5.so.7.0.4 -lib/libhdf5_cpp.a -lib/libhdf5_cpp.la -lib/libhdf5_cpp.so -lib/libhdf5_cpp.so.7 -lib/libhdf5_cpp.so.7.0.4 -%%FORTRAN%%lib/libhdf5_fortran.a -%%FORTRAN%%lib/libhdf5_fortran.la -%%FORTRAN%%lib/libhdf5_fortran.so -%%FORTRAN%%lib/libhdf5_fortran.so.7 -%%FORTRAN%%lib/libhdf5_fortran.so.7.0.4 -lib/libhdf5_hl.a -lib/libhdf5_hl.la -lib/libhdf5_hl.so -lib/libhdf5_hl.so.7 -lib/libhdf5_hl.so.7.0.4 -lib/libhdf5_hl_cpp.a -lib/libhdf5_hl_cpp.la -lib/libhdf5_hl_cpp.so -lib/libhdf5_hl_cpp.so.7 -lib/libhdf5_hl_cpp.so.7.0.4 -%%FORTRAN%%lib/libhdf5hl_fortran.a -%%FORTRAN%%lib/libhdf5hl_fortran.la -%%FORTRAN%%lib/libhdf5hl_fortran.so -%%FORTRAN%%lib/libhdf5hl_fortran.so.7 -%%FORTRAN%%lib/libhdf5hl_fortran.so.7.0.4 -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/README -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/chunks.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/compound.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/create.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/extend_ds.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5group.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/readdata.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/run-c++-ex.sh -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/writedata.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_attribute.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_chunk_read.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_compound.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_drivers.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_elink_unix2win.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_extend_write.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_extlink.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_group.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_mount.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_read.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_ref2reg.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_reference.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_select.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_shared_mesg.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_write.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ph5example.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/run-c-ex.sh -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c++/ptExampleFL.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c++/ptExampleVL.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c++/run-hlc++-ex.sh -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_ds1.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_image1.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_image2.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_lite1.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_lite2.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_lite3.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_table_01.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_table_02.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_table_03.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_table_04.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_table_05.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_table_06.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_table_07.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_table_08.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_table_09.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_table_10.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_table_11.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_table_12.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/image24pixel.txt -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/image8.txt -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/pal_rgb.h -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ptExampleFL.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ptExampleVL.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/run-hlc-ex.sh -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/ex_ds1.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/exlite.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/run-hlfortran-ex.sh -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/run-hl-ex.sh -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/run-all-ex.sh -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/hyperslab.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/compound.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/grpit.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/run-fortran-ex.sh -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/refobjexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/dsetexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/groupexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/attrexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/selectele.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/grpsexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/refregexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/mountexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/grpdsetexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/rwdsetexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/fileexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/ph5example.f90 -%%FORTRAN%%%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/hl/fortran -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/hl/c++ -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/hl/c -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/hl -%%FORTRAN%%%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/fortran -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++ -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%% |