diff options
Diffstat (limited to 'science')
-rw-r--r-- | science/Makefile | 1 | ||||
-rw-r--r-- | science/mmtf/Makefile | 49 | ||||
-rw-r--r-- | science/mmtf/distinfo | 5 | ||||
-rw-r--r-- | science/mmtf/files/patch-tests_mmtf__tests.cpp | 11 | ||||
-rw-r--r-- | science/mmtf/pkg-descr | 6 |
5 files changed, 72 insertions, 0 deletions
diff --git a/science/Makefile b/science/Makefile index 2f713e25883b..136989c60bfb 100644 --- a/science/Makefile +++ b/science/Makefile @@ -142,6 +142,7 @@ SUBDIR += metaphysicl SUBDIR += minc2 SUBDIR += mmdb2 + SUBDIR += mmtf SUBDIR += mol2ps SUBDIR += molgif SUBDIR += mpb diff --git a/science/mmtf/Makefile b/science/mmtf/Makefile new file mode 100644 index 000000000000..6cbff1437f54 --- /dev/null +++ b/science/mmtf/Makefile @@ -0,0 +1,49 @@ +# $FreeBSD$ + +PORTNAME= mmtf +DISTVERSION= g20180730 +CATEGORIES= science biology + +MAINTAINER= yuri@FreeBSD.org +COMMENT= C++ implementation of the MMTF API, decoder and encoder + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +RUN_DEPENDS= ${LOCALBASE}/include/msgpack.hpp:devel/msgpack + +USES= cmake:outsource compiler:c++11-lang localbase:ldflags +USE_GITHUB= yes +GH_ACCOUNT= rcsb +GH_PROJECT= mmtf-cpp +GH_TAGNAME= 63e58a9 +GH_TUPLE= rcsb:mmtf:8c88834:x/mmtf_spec + +NO_BUILD= yes +NO_ARCH= yes + +PLIST_FILES= include/mmtf.hpp \ + include/mmtf/binary_decoder.hpp \ + include/mmtf/binary_encoder.hpp \ + include/mmtf/decoder.hpp \ + include/mmtf/encoder.hpp \ + include/mmtf/errors.hpp \ + include/mmtf/export_helpers.hpp \ + include/mmtf/map_decoder.hpp \ + include/mmtf/msgpack_decoder.hpp \ + include/mmtf/object_encoders.hpp \ + include/mmtf/structure_data.hpp + +post-patch: + @cd ${WRKDIR} && ${LN} -s ${WRKSRC}/mmtf_spec # needed for testing + +do-install: + cd ${WRKSRC} && ${COPYTREE_SHARE} include ${STAGEDIR}${PREFIX} + +do-test: + @cd ${BUILD_WRKSRC} && \ + ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -Dmmtf_build_local=ON -DBUILD_TESTS=ON ${CMAKE_SOURCE_PATH} && \ + ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ + ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test + +.include <bsd.port.mk> diff --git a/science/mmtf/distinfo b/science/mmtf/distinfo new file mode 100644 index 000000000000..c10212e02821 --- /dev/null +++ b/science/mmtf/distinfo @@ -0,0 +1,5 @@ +TIMESTAMP = 1539895815 +SHA256 (rcsb-mmtf-cpp-g20180730-63e58a9_GH0.tar.gz) = 4570596c98ab520514b31f88c66478170123e4aa8f724c96e69d4973be6a527e +SIZE (rcsb-mmtf-cpp-g20180730-63e58a9_GH0.tar.gz) = 58757 +SHA256 (rcsb-mmtf-8c88834_GH0.tar.gz) = 7c29eb9064e53ea447701b79764732a72ff53aa5adff25759e0e2b549c212cca +SIZE (rcsb-mmtf-8c88834_GH0.tar.gz) = 34499239 diff --git a/science/mmtf/files/patch-tests_mmtf__tests.cpp b/science/mmtf/files/patch-tests_mmtf__tests.cpp new file mode 100644 index 000000000000..e7e1d81127cc --- /dev/null +++ b/science/mmtf/files/patch-tests_mmtf__tests.cpp @@ -0,0 +1,11 @@ +--- tests/mmtf_tests.cpp.orig 2018-10-18 20:26:48 UTC ++++ tests/mmtf_tests.cpp +@@ -5,7 +5,7 @@ + #define CATCH_CONFIG_MAIN + #endif + +-#include "catch.hpp" ++#include <catch2/catch.hpp> + + #include <mmtf.hpp> + #include <mmtf/export_helpers.hpp> diff --git a/science/mmtf/pkg-descr b/science/mmtf/pkg-descr new file mode 100644 index 000000000000..d0b23bdfdd42 --- /dev/null +++ b/science/mmtf/pkg-descr @@ -0,0 +1,6 @@ +mmtf is a C++ headers-only decoder/encoder library for the MMTF format. + +The macromolecular transmission format (MMTF) is a binary encoding of chemical +and biological structures. + +WWW: https://mmtf.rcsb.org/ |