diff options
Diffstat (limited to 'science')
| -rw-r--r-- | science/Makefile | 1 | ||||
| -rw-r--r-- | science/libgeodecomp/Makefile | 43 | ||||
| -rw-r--r-- | science/libgeodecomp/distinfo | 3 | ||||
| -rw-r--r-- | science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp | 16 | ||||
| -rw-r--r-- | science/libgeodecomp/files/patch-src_CMakeLists.txt | 11 | ||||
| -rw-r--r-- | science/libgeodecomp/pkg-descr | 10 | ||||
| -rw-r--r-- | science/libgeodecomp/pkg-plist | 195 |
7 files changed, 279 insertions, 0 deletions
diff --git a/science/Makefile b/science/Makefile index 9468c16b376e..2c39cbee4948 100644 --- a/science/Makefile +++ b/science/Makefile @@ -70,6 +70,7 @@ SUBDIR += lamprop SUBDIR += libaec SUBDIR += libctl + SUBDIR += libgeodecomp SUBDIR += libghemical SUBDIR += libint SUBDIR += libkml diff --git a/science/libgeodecomp/Makefile b/science/libgeodecomp/Makefile new file mode 100644 index 000000000000..559bb8b8555e --- /dev/null +++ b/science/libgeodecomp/Makefile @@ -0,0 +1,43 @@ +# Created by: Kurt Kanzenbach <kurt@kmk-computers.de> +# $FreeBSD$ + +PORTNAME= libgeodecomp +PORTVERSION= 0.4.0 +CATEGORIES= science devel +MASTER_SITES= http://www.libgeodecomp.org/archive/ + +MAINTAINER= kurt@kmk-computers.de +COMMENT= LibGeoDecomp is an auto-parallelizing library for computer simulations + +LICENSE= BSL +LICENSE_FILE= ${WRKSRC}/LICENSE + +LIB_DEPENDS= libboost_system.so:devel/boost-libs libboost_date_time.so:devel/boost-libs \ + libboost_filesystem.so:devel/boost-libs + +USES= cmake:outsource compiler:c++11-lib +USE_GCC= yes +USE_LDCONFIG= yes + +CMAKE_ARGS= -DWITH_CUDA:BOOL=FALSE -DWITH_VISIT:BOOL=FALSE \ + -DWITH_HPX:BOOL=FALSE -DWITH_OPENCL:BOOL=FALSE \ + -DWITH_OPENCV:BOOL=FALSE -DWITH_TYPEMAPS=FALSE + +OPTIONS_DEFINE= MPI QT4 SILO SCOTCH +OPTIONS_DEFAULT= MPI QT4 SILO SCOTCH + +MPI_LIB_DEPENDS= libmpich.so:net/mpich2 +MPI_CMAKE_BOOL= WITH_MPI + +QT4_USE= QT4=corelib,gui,opengl,qmake_build,moc_build,rcc_build,uic_build +QT4_CMAKE_BOOL= WITH_QT + +SILO_DESC= Enable Silo dependend output +SILO_LIB_DEPENDS= libsiloh5.so:science/silo +SILO_CMAKE_BOOL= WITH_SILO + +SCOTCH_DESC= Enable graph partitioning based on Scotch/Scotch-PT +SCOTCH_BUILD_DEPENDS= ${LOCALBASE}/lib/libscotch.a:cad/scotch +SCOTCH_CMAKE_BOOL= WITH_SCOTCH + +.include <bsd.port.mk> diff --git a/science/libgeodecomp/distinfo b/science/libgeodecomp/distinfo new file mode 100644 index 000000000000..525892f3eea5 --- /dev/null +++ b/science/libgeodecomp/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1476973737 +SHA256 (libgeodecomp-0.4.0.tar.gz) = f1a4fbc0c04952a148cbe186f36fc9e2307f7b0ecaf6960b56f2135ca3b8fa4e +SIZE (libgeodecomp-0.4.0.tar.gz) = 1022767 diff --git a/science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp b/science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp new file mode 100644 index 000000000000..2bfd33d2287f --- /dev/null +++ b/science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp @@ -0,0 +1,16 @@ +--- lib/libflatarray/src/aligned_allocator.hpp.orig 2014-10-28 09:12:48 UTC ++++ lib/libflatarray/src/aligned_allocator.hpp +@@ -8,13 +8,7 @@ + #ifndef FLAT_ARRAY_ALIGNED_ALLOCATOR_HPP + #define FLAT_ARRAY_ALIGNED_ALLOCATOR_HPP + +-#ifdef __APPLE__ + #include <cstddef> +-#include <stdlib.h> +-#else +-#include <malloc.h> +-#endif +- + #include <memory> + + namespace LibFlatArray { diff --git a/science/libgeodecomp/files/patch-src_CMakeLists.txt b/science/libgeodecomp/files/patch-src_CMakeLists.txt new file mode 100644 index 000000000000..d6718ef83895 --- /dev/null +++ b/science/libgeodecomp/files/patch-src_CMakeLists.txt @@ -0,0 +1,11 @@ +--- src/CMakeLists.txt.orig 2016-10-17 18:06:32 UTC ++++ src/CMakeLists.txt +@@ -575,7 +575,7 @@ Version: ${PACKAGE_VERSION} + Libs: ${INSTALLER_LINK_FLAGS} + Cflags: -I${CMAKE_INSTALL_PREFIX}/include ${PKG_CONFIG_INCLUDE_FLAGS} + ") +-install(FILES "${CMAKE_BINARY_DIR}/${PACKAGE_NAME}.pc" DESTINATION "${LIB_DIR}/pkgconfig") ++install(FILES "${CMAKE_BINARY_DIR}/${PACKAGE_NAME}.pc" DESTINATION "libdata/pkgconfig") + + set(ConfigPackageLocation lib/cmake/${PACKAGE_NAME}) + diff --git a/science/libgeodecomp/pkg-descr b/science/libgeodecomp/pkg-descr new file mode 100644 index 000000000000..966abd2dabd9 --- /dev/null +++ b/science/libgeodecomp/pkg-descr @@ -0,0 +1,10 @@ +LibGeoDecomp (Library for Geometric Decomposition codes) is an +auto-parallelizing library for computer simulations. It is specifically targeted +computational science applications in the context of supercomputers and +heterogeneous systems. The library eases development of such tightly coupled +codes by essentially taking over the parallel programming: it handles both, the +parallelization itself and parameter tuning. This enables scientists to focus on +their simulation code, rather than the technical details of the parallel +computer. + +WWW: http://www.libgeodecomp.org/ diff --git a/science/libgeodecomp/pkg-plist b/science/libgeodecomp/pkg-plist new file mode 100644 index 000000000000..f1c2eedad397 --- /dev/null +++ b/science/libgeodecomp/pkg-plist @@ -0,0 +1,195 @@ +include/libflatarray/aggregated_member_size.hpp +include/libflatarray/aligned_allocator.hpp +include/libflatarray/api_traits.hpp +include/libflatarray/coord.hpp +include/libflatarray/cuda_allocator.hpp +include/libflatarray/detail/dual_callback_helper.hpp +include/libflatarray/detail/get_set_instance_functor.hpp +include/libflatarray/detail/load_save_functor.hpp +include/libflatarray/detail/macros.hpp +include/libflatarray/detail/offset.hpp +include/libflatarray/detail/set_byte_size_functor.hpp +include/libflatarray/detail/short_vec_avx_float_8.hpp +include/libflatarray/detail/short_vec_qpx_double_4.hpp +include/libflatarray/detail/short_vec_sse_double_8.hpp +include/libflatarray/detail/short_vec_sse_float_16.hpp +include/libflatarray/detail/short_vec_sse_float_8.hpp +include/libflatarray/detail/sqrt_reference.hpp +include/libflatarray/flat_array.hpp +include/libflatarray/macros.hpp +include/libflatarray/member_ptr_to_offset.hpp +include/libflatarray/number_of_members.hpp +include/libflatarray/short_vec.hpp +include/libflatarray/soa_accessor.hpp +include/libflatarray/soa_array.hpp +include/libflatarray/soa_grid.hpp +include/libflatarray/testbed/benchmark.hpp +include/libflatarray/testbed/cpu_benchmark.hpp +include/libflatarray/testbed/evaluate.hpp +include/libflatarray/testbed/gpu_benchmark.hpp +include/libgeodecomp.h +include/libgeodecomp/communication/mpilayer.h +include/libgeodecomp/communication/patchlink.h +include/libgeodecomp/communication/serialization.h +include/libgeodecomp/communication/typemaps.h +include/libgeodecomp/config.h +include/libgeodecomp/geometry/coord.h +include/libgeodecomp/geometry/coordbox.h +include/libgeodecomp/geometry/cudaregion.h +include/libgeodecomp/geometry/fixedcoord.h +include/libgeodecomp/geometry/floatcoord.h +include/libgeodecomp/geometry/partitionmanager.h +include/libgeodecomp/geometry/partitions/checkerboardingpartition.h +include/libgeodecomp/geometry/partitions/hilbertpartition.h +include/libgeodecomp/geometry/partitions/hindexingpartition.h +include/libgeodecomp/geometry/partitions/partition.h +include/libgeodecomp/geometry/partitions/ptscotchpartition.h +include/libgeodecomp/geometry/partitions/recursivebisectionpartition.h +include/libgeodecomp/geometry/partitions/scotchpartition.h +include/libgeodecomp/geometry/partitions/spacefillingcurve.h +include/libgeodecomp/geometry/partitions/stripingpartition.h +include/libgeodecomp/geometry/partitions/zcurvepartition.h +include/libgeodecomp/geometry/region.h +include/libgeodecomp/geometry/regionstreakiterator.h +include/libgeodecomp/geometry/stencils.h +include/libgeodecomp/geometry/streak.h +include/libgeodecomp/geometry/topologies.h +include/libgeodecomp/geometry/voronoimesher.h +include/libgeodecomp/io/asciiwriter.h +include/libgeodecomp/io/bovwriter.h +include/libgeodecomp/io/collectingwriter.h +include/libgeodecomp/io/hpxwritercollector.h +include/libgeodecomp/io/hpxwritersink.h +include/libgeodecomp/io/hpxwritersinkserver.h +include/libgeodecomp/io/imagepainter.h +include/libgeodecomp/io/initializer.h +include/libgeodecomp/io/ioexception.h +include/libgeodecomp/io/logger.h +include/libgeodecomp/io/memorywriter.h +include/libgeodecomp/io/mockinitializer.h +include/libgeodecomp/io/mocksteerer.h +include/libgeodecomp/io/mockwriter.h +include/libgeodecomp/io/mpiio.h +include/libgeodecomp/io/mpiioinitializer.h +include/libgeodecomp/io/mpiiowriter.h +include/libgeodecomp/io/parallelmemorywriter.h +include/libgeodecomp/io/parallelmpiiowriter.h +include/libgeodecomp/io/paralleltestwriter.h +include/libgeodecomp/io/parallelwriter.h +include/libgeodecomp/io/plotter.h +include/libgeodecomp/io/ppmwriter.h +include/libgeodecomp/io/qtwidgetwriter.h +include/libgeodecomp/io/remotesteerer.h +include/libgeodecomp/io/serialbovwriter.h +include/libgeodecomp/io/silowriter.h +include/libgeodecomp/io/simplecellplotter.h +include/libgeodecomp/io/simpleinitializer.h +include/libgeodecomp/io/steerer.h +include/libgeodecomp/io/testinitializer.h +include/libgeodecomp/io/teststeerer.h +include/libgeodecomp/io/testwriter.h +include/libgeodecomp/io/tracingwriter.h +include/libgeodecomp/io/visitwriter.h +include/libgeodecomp/io/writer.h +include/libgeodecomp/loadbalancer/biasbalancer.h +include/libgeodecomp/loadbalancer/loadbalancer.h +include/libgeodecomp/loadbalancer/mockbalancer.h +include/libgeodecomp/loadbalancer/noopbalancer.h +include/libgeodecomp/loadbalancer/oozebalancer.h +include/libgeodecomp/loadbalancer/randombalancer.h +include/libgeodecomp/loadbalancer/tracingbalancer.h +include/libgeodecomp/misc/apitraits.h +include/libgeodecomp/misc/chronometer.h +include/libgeodecomp/misc/clonable.h +include/libgeodecomp/misc/color.h +include/libgeodecomp/misc/cudautil.h +include/libgeodecomp/misc/fpscounter.h +include/libgeodecomp/misc/math.h +include/libgeodecomp/misc/mpitest.h +include/libgeodecomp/misc/nonpodtestcell.h +include/libgeodecomp/misc/optimizer.h +include/libgeodecomp/misc/palette.h +include/libgeodecomp/misc/patternoptimizer.h +include/libgeodecomp/misc/quickpalette.h +include/libgeodecomp/misc/random.h +include/libgeodecomp/misc/scopedtimer.h +include/libgeodecomp/misc/simplexoptimizer.h +include/libgeodecomp/misc/simulationfactory.h +include/libgeodecomp/misc/simulationparameters.h +include/libgeodecomp/misc/stdcontaineroverloads.h +include/libgeodecomp/misc/stringops.h +include/libgeodecomp/misc/stringvec.h +include/libgeodecomp/misc/tempfile.h +include/libgeodecomp/misc/testcell.h +include/libgeodecomp/misc/testhelper.h +include/libgeodecomp/parallelization/cacheblockingsimulator.h +include/libgeodecomp/parallelization/cudasimulator.h +include/libgeodecomp/parallelization/distributedsimulator.h +include/libgeodecomp/parallelization/hiparsimulator.h +include/libgeodecomp/parallelization/hiparsimulator/commonstepper.h +include/libgeodecomp/parallelization/hiparsimulator/cudastepper.h +include/libgeodecomp/parallelization/hiparsimulator/multicorestepper.h +include/libgeodecomp/parallelization/hiparsimulator/offsethelper.h +include/libgeodecomp/parallelization/hiparsimulator/openclstepper.h +include/libgeodecomp/parallelization/hiparsimulator/parallelwriteradapter.h +include/libgeodecomp/parallelization/hiparsimulator/steereradapter.h +include/libgeodecomp/parallelization/hiparsimulator/stepper.h +include/libgeodecomp/parallelization/hiparsimulator/updategroup.h +include/libgeodecomp/parallelization/hiparsimulator/vanillastepper.h +include/libgeodecomp/parallelization/hpxsimulator.h +include/libgeodecomp/parallelization/hpxsimulator/createupdategroups.h +include/libgeodecomp/parallelization/hpxsimulator/hpxstepper.h +include/libgeodecomp/parallelization/hpxsimulator/patchlink.h +include/libgeodecomp/parallelization/hpxsimulator/updategroup.h +include/libgeodecomp/parallelization/hpxsimulator/updategroupserver.h +include/libgeodecomp/parallelization/mocksimulator.h +include/libgeodecomp/parallelization/monolithicsimulator.h +include/libgeodecomp/parallelization/serialsimulator.h +include/libgeodecomp/parallelization/simulator.h +include/libgeodecomp/parallelization/stripingsimulator.h +include/libgeodecomp/storage/boxcell.h +include/libgeodecomp/storage/collectioninterface.h +include/libgeodecomp/storage/containercell.h +include/libgeodecomp/storage/coordmap.h +include/libgeodecomp/storage/cudaarray.h +include/libgeodecomp/storage/cudagrid.h +include/libgeodecomp/storage/dataaccessor.h +include/libgeodecomp/storage/defaultfilter.h +include/libgeodecomp/storage/displacedgrid.h +include/libgeodecomp/storage/filter.h +include/libgeodecomp/storage/filterbase.h +include/libgeodecomp/storage/fixedarray.h +include/libgeodecomp/storage/fixedneighborhood.h +include/libgeodecomp/storage/grid.h +include/libgeodecomp/storage/gridbase.h +include/libgeodecomp/storage/gridtypeselector.h +include/libgeodecomp/storage/gridvecconv.h +include/libgeodecomp/storage/image.h +include/libgeodecomp/storage/linepointerassembly.h +include/libgeodecomp/storage/linepointerneighborhood.h +include/libgeodecomp/storage/linepointerupdatefunctor.h +include/libgeodecomp/storage/meshlessadapter.h +include/libgeodecomp/storage/mockpatchaccepter.h +include/libgeodecomp/storage/multicontainercell.h +include/libgeodecomp/storage/neighborhoodadapter.h +include/libgeodecomp/storage/neighborhooditerator.h +include/libgeodecomp/storage/patchaccepter.h +include/libgeodecomp/storage/patchbuffer.h +include/libgeodecomp/storage/patchbufferfixed.h +include/libgeodecomp/storage/patchprovider.h +include/libgeodecomp/storage/pointerneighborhood.h +include/libgeodecomp/storage/selector.h +include/libgeodecomp/storage/sellcsigmasparsematrixcontainer.h +include/libgeodecomp/storage/serializationbuffer.h +include/libgeodecomp/storage/simplefilter.h +include/libgeodecomp/storage/soagrid.h +include/libgeodecomp/storage/unstructuredgrid.h +include/libgeodecomp/storage/updatefunctor.h +include/libgeodecomp/storage/updatefunctortestbase.h +include/libgeodecomp/storage/vanillaupdatefunctor.h +lib/cmake/libgeodecomp/libgeodecomp-targets-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/libgeodecomp/libgeodecomp-targets.cmake +lib/cmake/libgeodecomp/libgeodecompConfig.cmake +lib/cmake/libgeodecomp/libgeodecompConfigVersion.cmake +lib/libgeodecomp.so +libdata/pkgconfig/libgeodecomp.pc |