| Commit message (Collapse) | Author | Age | Files | Lines |
... | |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
classic F-1 Spirit game in that you first have to clear tracks in
a top-down view with stock cars, rally cars and so on by accumulating
points given for finishing in the first places until you actually
get to play the Formula 1 tracks.
Otherwise there are quite some enhancements, namely improved graphics,
improved music, more realistic physics, real shape shown in the
maps, camera rotation and zoom, split screen for up to four players,
(online) highscore tables and replay saving.
WWW: http://www.braingames.getput.com/f1spirit/default.asp
PR: ports/123686
Submitted by: Dmitry Marakasov <amdmi3 at amdmi3.ru>
|
|
|
|
|
| |
PR: 123746
Submitted by: Dmitry Marakasov <amdmi3@amdmi3.ru> (maintainer)
|
|
|
|
|
| |
PR: 123745
Submitted by: Dmitry Marakasov <amdmi3@amdmi3.ru> (maintainer)
|
|
|
|
|
| |
PR: 123747
Submitted by: Matthew D. Fuller <fullermd@over-yonder.net> (maintainer)
|
|
|
|
|
| |
PR: 123748
Submitted by: Matthew D. Fuller <fullermd@over-yonder.net> (maintainer)
|
|
|
|
| |
Submitted by: pavbot/erwinbot
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
three-dimensional chemical structures.
Features include reading a variety
of file types and output from quantum
chemistry programs, and animation of
multi-frame files and computed normal
modes from quantum programs.
WWW: http://sourceforge.net/projects/jmol/
PR: ports/123631
Submitted by: Wen heping <wenheping at gmail.com>
|
|
|
|
|
| |
PR: 123771
Submitted by: Janos Mohacsi <janos.mohacsi@bsd.hu> (maintainer)
|
|
|
|
|
|
|
| |
- Pass maintainership to Submitter
PR: 123766
Submitted by: Pawel Pekala <c0rn@o2.pl>
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
| |
plugin translates any @username and the sender name to the link to the
user respectively. pidgin-twitter also can play a sound when an
incoming message contains any recipient name or sender name which is
listed in the each dedicated lists.
WWW: http://www.honeyplanet.jp/download.html
PR: ports/123767
Submitted by: Junji NAKANISHI <jun-g at daemonfreaks.com>
|
|
|
|
| |
Approved by: maintainer implicit
|
| |
|
|
|
|
| |
Approved by: maintainer implicit
|
|
|
|
| |
- Take maintainership
|
|
|
|
| |
- Take maintainership
|
|
|
|
| |
- Take maintainership
|
| |
|
| |
|
| |
|
| |
|
|
|
|
|
|
|
|
|
| |
partition_codewords = partion_values
* correctly handle the nonsensical codebook.dim==0 case
* dd checks/rejection for absurdly huge codebooks
Obtained from: Xiph SVN
Security: http://www.vuxml.org/freebsd/f5a76faf-244c-11dd-b143-0211d880e350
|
| |
|
| |
|
|
|
|
|
|
|
| |
appropriate USE_AUTOTOOLS stanza.
Note that the mass-conversion from autoconf 2.61 -> 2.62 will take place
at a later date.
|
|
|
|
|
|
|
|
| |
- Update to 0.3.0.20080504
- Pass maintainership to submitter
PR: 123397
Submitted by: Ganael Laplanche <ganael.laplanche@martymac.com>
|
|
|
|
| |
Submitted by: Mark Daniel Reidel <mark@reidel.info>
|
| |
|
|
|
|
|
|
|
|
|
|
|
| |
Notes:
The slave ports multimedia/smplayer-qt4 have been removed
with the upgrade of multimedia/smplayer to 0.6.0, qt3 is
no longer supported. They are now fully integrated into
multimedia/smplayer.
Please uninstall multimedia/smplayer-qt4 port before
upgrading multimedia/smplayer to version 0.6.0 or higher.
|
|
|
|
| |
Requested by: pointhat via pav
|
|
|
|
|
|
|
|
| |
Requested by: many
PR: ports/116513 [1],
ports/123711 [2]
Submitted by: Bruce Cran <bruce@cran.org.uk> [1],
delphij [2]
|
|
|
|
|
| |
- Remove obsolete dhcp patch
- Bump PORTREVISION
|
|
|
|
| |
Submitted by: Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)
|
|
|
|
| |
Submitted by: Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)
|
|
|
|
|
|
|
| |
- Bump PORTREVISION.
Reported by: Dan Langille (FreshPorts Sanity)
Approved by: araujo (mentor)
|
|
|
|
|
| |
Include new error pages (NewEnglish); set these as the default error
pages.
|
|
|
|
|
|
| |
- Remove the old port
PR: ports/122781
|
|
|
|
|
|
|
|
|
|
| |
alias) from vpopmail database.
WWW: http://sourceforge.net/projects/vchkuser
PR: ports/119939
Submitted by: Luiz Otavio O Souza <loos.br@gmail.com>
Approved by: araujo (mentor)
|
|
|
|
|
|
| |
PR: ports/123575
Submitted by: Chuck Swiger <chuck@pkix.net> (maintainer)
Approved by: araujo (mentor), Chuck Swiger <chuck@pkix.net> (maintainer)
|
|
|
|
|
|
| |
PR: ports/122394
Submitted by: "Aleksander Fafula" <aleksander.fafula@gmail.com>
Approved by: araujo (mentor), maintainer timeout (> 2 weeks)
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
- Makefile rewrited (totally out of standard).
- Update WWW in pkg-descr.
- Move pkg-message to FILESDIR.
- Update pkg-plist.
- New RC script.
PR: ports/121824
Submitted by: Dennis Yusupoff <Denissia@yandex.ru>
Reworked by: lippe (myself)
Approved by: araujo (mentor), maintainer timeout (>2 weeks)
|
|
|
|
| |
PR: ports/122781
|
|
|
|
|
|
|
| |
- Pass maintainership to submitter.
PR: ports/123476
Submitted by: Philip M. Gollucci <pgollucci@p6m7g8.com>
|
|
|
|
| |
PR: ports/122781
|
|
|
|
| |
Spotted by: pointyhat
|
|
|
|
|
| |
PR: port/123474
Submitted by: Philip M. Gollucci <pgollucci@p6m7g8.com>
|
|
|
|
|
|
|
|
| |
- Use SAVANNAH macro.
PR: ports/123511
Submitted by: Philip M. Gollucci <pgollucci@p6m7g8.com>
Approved by: Sergey Alexanov <salexanov@gmail.com> (maintainer)
|
|
|
|
|
|
|
|
| |
- Bump PORTREVISION
PR: ports/122735
Submitted by: Skalozubov Ilia <root at skinc.su>
Approved by: maintainer timeout (1 month)
|
|
|
|
|
| |
PR: 123646 123647 123648 123650
Submitted by: Greg Larkin <glarkin@sourcehosting.net>
|
| |
|
|
|
|
| |
PR: based on 123448
|
| |
|
| |
|
|
|
|
| |
[1] http://kapranoff.ru/~kappa/files/ports.UPDATING.rss20.xml
|
| |
|
| |
|
|
|
|
|
|
| |
PR: ports/123683
Submitted by: Luiz Otavio O Souza <loos.br@gmail.com>
Approved by: thierry (mentor)
|
|
|
|
|
|
|
| |
- bump PORTREVISION
PR: by mail
Submitted by: Scott MacGregor <shadowbq_AT_gmail dot com>
|
|
|
|
| |
Approved by: maintainer implicit
|
|
|
|
| |
Approved by: maintainer implicit
|
|
|
|
| |
Approved by: maintainer implicit
|
|
|
|
| |
Reported by: pointyhat via pav
|
|
|
|
|
|
| |
8.x-systems, where it is no longer part of compiler flags.
Notified by: pav
|
|
|
|
|
|
| |
tar: lib/synfig/modules/libmod_openexr.la: Cannot stat: No such file or directory
Reported by: pointyhat
|
|
|
|
|
| |
PR: ports/123699
Submitted by: Lapo Luchini
|
|
|
|
| |
Reported by: pointyhat
|
|
|
|
|
|
|
|
|
| |
PR: ports/122548
Submitted by: Dima Panov
While here switch to .bz2 master file, and to the easier SF-notation for
MASTERSITES. GNU-make is not (any longer?) required and parallel build
is now possible.
|
|
|
|
|
|
|
| |
install bin/uniconv
PR: 123743
Submitted by: Dmitry Marakasov <amdmi3@amdmi3.ru>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
for the time being, while I investigate, why they sometimes fail with
"impossible case" and sometimes succeed. The removes the need for
MANUAL_PACKAGE_BUILD.
Use USE_TCL.
Using:
PR: ports/116550
PR: ports/122454
Submitted by: mm
|
| |
|
|
|
|
|
|
|
|
|
|
|
| |
to clear the central area from different colored bricks. Three or
more same colored bricks that touch will vanish. You can shoot
bricks into the playing field from the fringes.
WWW: http://bilious.homelinux.org/~paxed/brickshooter/
PR: ports/123540
Submitted by: Dmitry Marakasov <amdmi3 at amdmi3.ru>
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
backing as long as they apply to all. I refuse to obey a particular policy --
that of automatic bumping PORTREVISION of all ports lib-depending on mine.
It is no longer possible to leave obeying a disagreable policy to those, who
finds it acceptable, either -- portmgr gets really angry, threatening backouts
and commit-bit suspensions.
I thus have no other option but to relinquish maintainership of ports, which
install shared libraries, which any other ports depend on -- starting with
GraphicsMagick.
|
|
|
|
| |
Approved by: maintainer
|
|
|
|
|
| |
PR: 123728
Submitted by: maintainer
|
|
|
|
|
|
|
| |
- Respect NOPORTEXAMPLES
PR: 123506
Submitted by: Ports Fury
|
|
|
|
|
| |
PR: 123507
Submitted by: Ganael Laplanche <ganael.laplanche@martymac.com> (maintainer)
|
|
|
|
|
|
| |
PR: 123582
Submitted by: Wen Heping <wenheping@gmail.com>
Approved by: maintainer
|
|
|
|
|
|
| |
PR: 123142
Submitted by: Wen heping <wenheping@gmail.com>
Approved by: maintainer timeout
|
|
|
|
|
| |
PR: 123277
Submitted by: Ganael Laplanche <ganael.laplanche@martymac.com> (maintainer)
|
|
|
|
|
| |
PR: 123578
Submitted by: olli hauer <ohauer@gmx.de>
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
| |
(libmonetra [formerly libmcve]), allowing you to
work directly with MCVE/Monetra from your PHP
scripts. Monetra is Main Street Softworks' solution
to direct credit card processing for Unix.
WWW: http://pecl.php.net/package/mcve/
PR: ports/123665
Submitted by: Wen Heping <wenheping at gmail.com>
|
| |
|
|
|
|
|
|
| |
PR: 123586
Submitted by: Yoshisato YANAGISAWA <osho@pcc-software.org>
Approved by: maintainer implicit
|
| |
|
|
|
|
|
|
|
|
|
|
|
| |
jack-smf-recorder - whose purpose is to play and record MIDI streams
from/to Standard MIDI Files (i.e. the files with .mid extension)
using JACK MIDI. There is also smfsh, "SMF shell" that is kind of
interactive, command line SMF files manipulation tool which started
its life as a debugging aid. And finally libsmf, C library for
loading, writing and manipulating the contents of SMF files.
WWW: http://pin.if.uz.zgora.pl/~trasz/jack-smf-utils/
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
NBC (Next Byte Codes) is a programming language for the LEGO
MINDSTORMS NXT product. NBC's syntax is based on assembler programming
langauges, so experienced assembler programmers (or just about any
programmers) should find it very easy to get started with. Even if you
aren't an experienced programmer, NBC is relatively easy to learn.
WWW: http://bricxcc.sourceforge.net/nbc/
PR: 116274
Submitted by: Ivan "Rambius" Ivanov <rambiusparkisanius_ at __gmail.com>
|
|
|
|
|
|
|
|
|
| |
- Make fetchable again.
- Update pkg-desc.
PR: ports/123126, ports/117900
Submitted by: Martin Tournoij <carpetsmoker@xs4all.nl>, Henrik Friedrichsen <henrik@cheat-project.com>
Approved by: gabor (mentor), Martin Tournoij <carpetsmoker@xs4all.nl> (maintainer)
|
|
|
|
|
| |
PR: 123695
Submitted by: Wen heping <wenheping@gmail.com>
|
|
|
|
|
|
|
|
|
|
|
|
| |
- Move pkg-message to FILESDIR.
- Respect now NOPORTDOCS/NOPORTEXAMPLES.
[1] The distfile is obtained through a client-side script, which does not work with fetch(1).
PR: ports/121095
Submitted by: "Rashid N. Citycat Achilov" <citycat4@ngs.ru>
Reworked by: lippe (myself)
Approved by: gabor (mentor), maintainer timeout (> 2 weeks)
|
|
|
|
|
| |
PR: 123727
Submitted by: Dmitry Frolov <frolov@riss-telecom.ru> (maintainer)
|
|
|
|
|
|
| |
PR: 123698
Submitted by: Wen heping <wenheping@gmail.com>
Approved by: maintainer implicit
|
|
|
|
|
|
|
|
| |
- Bump PORTREVISION.
PR: ports/122939
Submitted by: Frank Fenor <frank@fenor.de>
Approved by: gabor (mentor), maintainer timeout (> 2 weeks)
|
|
|
|
|
| |
PR: 123545
Submitted by: Giacomo.Mariani@die191.ing.unibo.it (maintainer)
|
|
|
|
|
| |
PR: 123505
Submitted by: Ports Fury
|
|
|
|
|
| |
PR: 123504
Submitted by: Ports Fury
|
|
|
|
|
| |
PR: 123503
Submitted by: Ports Fury
|
|
|
|
|
| |
PR: 123500
Submitted by: Ports Fury
|
|
|
|
|
| |
PR: 123501
Submitted by: Ports Fury
|
|
|
|
|
| |
PR: 123499
Submitted by: Ports Fury
|
|
|
|
|
| |
PR: 123498
Submitted by: Ports Fury
|
|
|
|
|
|
|
|
| |
sgtty exclusively. We'd better port it to termios, to make it work
without the COMPAT_43TTY kernel switch.
PR: 122884
Submitted by: Ed Schouten <ed@80386.nl>
|
|
|
|
|
| |
PR: 123497
Submitted by: Ports Fury
|
|
|
|
|
|
| |
- Take maintainership
Approved by: oliver (old maintainer)
|
|
|
|
| |
Submitted by: wxs
|
|
|
|
|
|
|
|
| |
- While I'm here fix ${MACHINE_ARCH}
PR: ports/123721
Submitted by: Pedro F. Giffuni <giffunip@tutopia.com>
Approved by: tabthorpe (mentor)
|
|
|
|
|
| |
PR: 123687
Submitted by: Jim Riggs <ports@christianserving.org> (maintainer)
|
|
|
|
|
| |
PR: 123679
Submitted by: Max Brazhnikov <makc@issp.ac.ru> (maintainer)
|
|
|
|
|
| |
PR: 123678
Submitted by: Max Brazhnikov <makc@issp.ac.ru>
|
|
|
|
|
| |
PR: 123677
Submitted by: Max Brazhnikov <makc@issp.ac.ru> (maintainer)
|
|
|
|
|
| |
PR: 123676
Submitted by: Max Brazhnikov <makc@issp.ac.ru> (maintainer)
|
|
|
|
|
| |
PR: 123672
Submitted by: Marcus von Appen <mva@sysfault.org> (maintainer)
|
|
|
|
|
| |
PR: 123610
Submitted by: Dmitry Marakasov <amdmi3@amdmi3.ru> (maintainer)
|
|
|
|
|
| |
PR: 123609
Submitted by: Dmitry Marakasov <amdmi3@amdmi3.ru> (maintainer)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
installation of the cachemgr.conf.default file: instead of explicitly
installing it I thought it would be enough to change an automake
variable that served an entirely different purpose, namely
hardcoding the path to the configuration in the cachemgr.cgi
binary.
- While at it: remove a no longer needed .sh reference from
files/pkg-message.in.
- Set PORTREVISION to 1 because the hardcoded name of the default
configuration file has changed within cachemgr.cgi.
PR: 123573
Submitted by: Thomas-Martin Seck <tmseck@web.de> (maintainer)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
configuration file to be passed to the C++ preprocessor (Squid bug #2346).
Thanks to Laurent Levier for reporting this issue to the maintainer.
- Fix a mistake I (the maintainer) introduced regarding the installation
of the cachemgr.conf.default file: instead of explicitly installing it
I thought it would be enough to change an automake variable that served
an entirely different purpose. This is also a bug in www/squid which
will be addressed in a separate PR.
- Portrevision bumped because the content of the package changed
(the cachemgr.cgi binary now has the correct path to cachemgr.conf
hardcoded).
PR: 123572
Submitted by: Thomas-Martin Seck <tmseck@web.de> (maintainer)
|
|
|
|
| |
- Add an additional mirror set
|
|
|
|
|
| |
open-vm-tools-nox11 is a open source version of the
vmware-guestd and vmware-tools ports without X11 support.
|
|
|
|
| |
- Depend on gettext and libiconv
|
|
|
|
|
|
|
| |
o move all additional functionality into separate patches and make it
opt in. It has been concern of asterisks devs that the FreeBSD pacakage
adds functionalty not present in the original version, whch could be
confusing.
|
| |
|
|
|
|
|
|
|
|
|
|
| |
sources: X-ray, NMR and DICOM-compatible imaging devices that
runs on free operating systems. Its aim is a easy to use DICOM
viewer with instant rendering of images, no matter the size and
the zoom of the DICOM image. It covers the "let's see the the
X-ray image" need of the medical professional.
WWW: http://www.orcero.org/irbis/kradview/
|
| |
|
| |
|
| |
|
| |
|
|
|
|
| |
Submitted by: Guy Yur <guyyur@gmail.com>
|
|
|
|
|
|
| |
PR: ports/123715
Submitted by: Guido Falsi <mad@madpilot.net>
Approved by: mentor (implicit)
|
|
|
|
| |
- Take maintainership.
|
| |
|
| |
|
| |
|
| |
|
| |
|
|
|
|
| |
Approved by: garga (mentor)
|
|
|
|
|
| |
Submitted by: Nick Evans (via private mail)
Approved by: garga (mentor)
|
|
|
|
|
|
| |
PR: ports/123636
Submitted by: Marcus von Appen <mva@sysfault.org> (maintainer)
Approved by: garga (mentor, implicit)
|
|
|
|
| |
Submitted by: gahr@
|
| |
|
|
|
|
|
|
|
|
|
| |
CodeLite is a powerful open-source, cross platform code editor for the
C/C++ programming languages.
http://www.codelite.org
Approved by: miwi (mentor)
|
| |
|
|
|
|
|
| |
PR: 123713
Submitted by: Radim Kolar SF.NET <hsn@sendmail.cz> (maintainer)
|
|
|
|
|
| |
PR: 123702
Submitted by: Peter Thoenen <peter.thoenen@yahoo.com> (maintainer)
|
|
|
|
|
|
|
| |
512mb
PR: 123712
Submitted by: maintainer
|
| |
|
|
|
|
|
|
|
|
|
|
| |
This module is a simple utility to convert katakana, hiragana, and
romaji at ease. This module makes use of utf8 semantics. Strings in
this module must be utf8-flagged. If they are not, you can use Encode
to do so.
WWW: http://search.cpan.org/dist/Lingua-JA-Kana/
Author: Dan Kogai <dankogai@dan.co.jp>
|
|
|
|
| |
- Update rsyslog to 2.0.5
|
| |
|
|
|
|
|
|
|
| |
- Split startup rc files, start vmware-kmod.sh earlier
- Bump portrevision
Submitted by: jkim
|
| |
|
|
|
|
|
|
| |
- Add option WITH_NEWT (use devel/newt or bundled module)
- Add other main features of the program in pkg-descr
- Remove option WITH_RSSATOM
|
|
|
|
| |
Approved by: miwi (mentor)
|
| |
|
|
|
|
|
|
|
|
|
|
|
| |
jrdesktop is an open source software for viewing and/or controlling
a remote PC. Besides then screenshots, keyboard and mouse events transfer,
jrdesktop includes many additional features (file transfer, data compression,
color conversion, ...).
http://jrdesktop.sourceforge.net/
Approved by: miwi (mentor)
|
| |
|
| |
|
|
|
|
| |
Approved by: garga (mentor, implicit)
|
| |
|
| |
|
| |
|
| |
|
| |
|
|
|
|
|
|
| |
- Add a debug knob
Reported by: pointyhat via pav
|
| |
|
|
|
|
|
|
| |
PR: ports/123622
Submitted by: Alexander Logvinov <ports@logvinov.com> (maintainer)
Approved by: garga (mentor, implicit)
|
| |
|
|
|
|
|
|
| |
on itself. Extracted the patch and recommit it.
PR: ports/120370
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Implement options that will allow the user to:
- rename ftp and ftpd to kftp and kftpd
- rename telnet and telnetd to ktelnet and ktelnetd
- rename rlogin to krlogin
- rename rsh to krsh
- rename rcp to krcp
This avoids shadowing by or being shadowed by, depending on one's PATH,
system utilities of the same name.
|
|
|
|
| |
Reported by: pointyhat via pav
|
|
|
|
|
|
| |
PR: 123661
Submitted by: Robin Gruyters
Pointy hat to: miwi
|
|
|
|
|
| |
PR: ports/123671
Submitted by: Josh Paetzel <josh@tcbug.org>
|
| |
|
| |
|
| |
|
|
|
|
|
|
| |
Supports 'grid' command and new examples in the keynavrc.
Approved by: garga (mentor, implicit)
|
|
|
|
|
| |
Reported by: FreshSanity
Pointy hat to: pav
|
|
|
|
|
|
| |
'IEEE80211_TID_SIZE' undeclared here (not in a function)
Reported by: pointyhat
|
|
|
|
| |
Reported by: pointyhat
|
|
|
|
|
|
| |
types for 'fexecve'
Reported by: pointyhat
|
|
|
|
|
| |
PR: ports/121001
Submitted by: Stefan Schmidt <stefan.schmidt(at)stadtbuch.de>
|
|
|
|
| |
Reported by: pointyhat
|
|
|
|
| |
Reported by: pointyhat
|
|
|
|
|
|
| |
PR: ports/123681
Submitted by: tabthorpe
Approved by: Paul Schmehl <pauls utdallas.edu> (maintainer)
|
|
|
|
| |
care for this port.
|
|
|
|
|
|
| |
Changelog: http://www.atunes.org/wiki/index.php?title=Changelog#aTunes_1.8.3
Noticed by: Stefan Thurner <thurners (AT) nicsys.de>, portscout
|
| |
|
|
|
|
|
|
|
|
|
|
| |
timestamps found at the beginning of each line with a formated time
and date time and date.
WWW: http://ee.lbl.gov/
PR: ports/123103
Submitted by: leres at ee.lbl.gov
|
|
|
|
|
| |
Noticed by: Andrzej Tobola <ato iem.pw.edu.pl>
Approved by: portmgr (pav)
|
| |
|
| |
|
|
|
|
|
|
| |
PR: ports/123658
Submitted by: Adi Pircalabu <adi.pircalabu@symstream.com> (old maintainer)
Approved by: garga (mentor, implicit)
|
| |
|
| |
|
|
|
|
|
| |
PR: 123660
Submitted by: Robin Gruyters <r.gruyters@yirdis.nl>
|
|
|
|
|
| |
PR: ports/119449
Submitted by: bz@ (maintainer)
|
|
|
|
|
| |
PR: ports/122303
Submitted by: Mark Daniel Reidel <ports@mark.reidel.info>
|
|
|
|
|
| |
PR: ports/122302
Submitted by: Mark Daniel Reidel <ports@mark.reidel.info>
|
| |
|
|
|
|
|
|
|
|
| |
Bump PORTREVISION, accordingly.
PR: ports/123000
Reported by: Remi LAURENT cloud at madpowah.org
Reviewed by: Yoshihiko Sarumaru mistral at imasy.or.jp (maintainer)
|
| |
|
| |
|
|
|
|
|
| |
PR: ports/123580
Submitted by: Oleg Gawriloff <barzog@telecom.by>
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP
package). NJplot is especially convenient for rooting the unrooted trees
obtained from parsimony, distance or maximum likelihood tree-building methods.
The package contains the following programs:
njplot - draw phylogenetic trees and interactively modify them
newicktops - non-interactive version rendering into a PostScript file
newicktotxt - non-interactive version rendering into a text file
unrooted - draw unrooted circular trees
If you use NJplot in a published work, please cite the following reference:
Perriere, G. and Gouy, M. (1996) WWW-Query: An on-line retrieval system for
biological sequence banks. Biochimie, 78, 364-369.
WWW: http://pbil.univ-lyon1.fr/software/njplot.html
PR: ports/118438
Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
|
|
|
|
|
|
| |
PR: ports/123668
Submitted by: Frank Altpeter <frank@altpeter.de> (maintainer)
Approved by: mentor (implicit)
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
The name stands for multiple sequence comparison by log-expectation.
A range of options is provided that give you the choice of optimizing
accuracy, speed, or some compromise between the two. Default parameters are
those that give the best average accuracy in the published tests. MUSCLE
can achieve both better average accuracy and better speed than CLUSTALW or
T-Coffee, depending on the chosen options.
Citation:
Edgar, R. C. (2004) MUSCLE: multiple sequence alignment with high accuracy
and high throughput. Nucleic Acids Research 32(5): 1792-1797.
Edgar, R. C. (2004) MUSCLE: a multiple sequence alignment method with
reduced time and space complexity. BMC Bioinformatics 5(1): 113.
The NAR paper gives only a brief overview of the algorithm and
implementation details. For a full discussion of the method and many of
the non-default options that it offers, please see the BMC paper.
WWW: http://www.drive5.com/muscle/
PR: ports/118460
Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
|
|
|
|
|
| |
PR: ports/123601
Submitted by: Gea-Suan Lin <gslin@gslin.org> (maintainer)
|
|
|
|
|
|
| |
PR: ports/121968
Submitted by: Boris S. <bst2006@dva.dyndns.org>
Approved by: maintainer timeout (laszlof; 1 month)
|
|
|
|
|
|
| |
PR: ports/119380
Submitted by: User1001 <supraexpress@globaleyes.net>
Approved by: maintainer timeout (laszlof; 4 months)
|
|
|
|
|
|
| |
PR: ports/122852
Submitted by: Lawrence Stewart <lstewart@FreeBSD.org>
Approved by: maintainer timeout (laszlof; 27 days)
|
|
|
|
|
| |
PR: ports/122488
Submitted by: Bjoern Koenig <bkoenig@cs.tu-berlin.de> (maintainer)
|
|
|
|
| |
Reported by: W.C.A. Wijngaards <wouter at nlnetlabs.nl>
|
|
|
|
|
|
|
| |
This fix the XSS vulnerability
Security: http://www.vuxml.org/freebsd/f49ba347-2190-11dd-907c-001c2514716c.html
Notified by: delphij
|
|
|
|
|
|
|
| |
This fix the XSS vulnerability
Security: http://www.vuxml.org/freebsd/f49ba347-2190-11dd-907c-001c2514716c.html
Notified by: delphij
|
| |
|
|
|
|
|
|
| |
The xorp port will now log to /var/log/xorp_rtrmgr.log by default, and
the xorp_rtrmgr process will be run under daemon(8) to detach it from
the controlling terminal.
|
| |
|
|
|
|
|
|
| |
retrieve CPU stats). Use the newer BSD sysctl code already available in
the 5.4.x instead of re-enabling the obsolete code from the previous
release.
|
|
|
|
|
| |
PR: ports/123638
Submitted by: Vivek Khera <vivek@khera.org>
|
| |
|
| |
|
| |
|
|
|
|
| |
ChangeLog: http://invisible-island.net/xterm/xterm.log.html#xterm_235
|
|
|
|
|
| |
PR: ports/123585
Submitted by: leeym
|
|
|
|
|
| |
PR: ports/123628
Submitted by: Lapo Luchini <lapo@lapo.it> (maintainer)
|
|
|
|
|
| |
Puzzled by: ports/123639
Submitted by: Harald Schmalzbauer <harry@omnisec.de>
|
|
|
|
|
| |
issue of -lpthread being needed when linking against libstdc++ on 7.x
and -CURRENT.
|
| |
|
| |
|
| |
|
|
|
|
| |
Submitted by: tabthorpe
|
| |
|
|
|
|
|
|
|
|
|
| |
addresses with hostnames.
WWW: http://ee.lbl.gov/
PR: ports/123102
Submitted by: leres at ee.lbl.gov
|
| |
|
|
|
|
|
|
|
|
|
| |
addresses with hostnames.
WWW: http://ee.lbl.gov/
PR: ports/123102
Submitted by: leres at ee.lbl.gov
|
|
|
|
|
|
|
|
|
|
| |
kqemu only accellerates qemu-system-x86_64 on amd64 that were missing
in qemu's pkg-message [1]
- Update the note about kqemu on amd64 SMP, and add a reminder to keep
kqemu in sync with the kernel while I'm at it
- Bump PORTREVISION
Noticed by: bakul [1]
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Updated for a FreeBSD 7.0 and above byte level locking
change. The problem was reported by Conrad J. Sabatier
<conrads@cox.net>, who helped test the update. Wesley
Shields <wxs@FreeBSD.org> provided an 8.0-CURRENT test
system.
Propagated the FreeBSD 7.0 and above locking changes to
FreeBSD 6.x, based on a report from Edwin Groothuis
<edwin@FreeBSD.org>.
(as a note about the above, if the port still fails for you, you should upgrade
your system either to the latest HEAD or the latest 7-STALBE there's a 2 weeks
window of breakage or so).
Added warnings for unsupported dialects or versions.
Added a missing quote to the Configure script's
FreeBSD stanza.
PR: ports/123615
Submitted by: maintainer
Supplimentary tindy testing by: miwi@
|
| |
|
|
|
|
|
|
|
|
| |
fixes package building in specific ocaml configurations (the list
of installed files varies).
- Bump PORTREVISION.
Discussed with: miwi
|
|
|
|
|
| |
Broken by: gabor
Reported by: erwin
|
|
|
|
|
|
| |
version and the port version has now been updates.
Reported by: Christopher Key <cjk32 at cam dot ac dot uk>
|
|
|
|
|
| |
PR: ports/123571
Submitted by: leeym
|
|
|
|
| |
Approved by: mentor (implicit)
|
|
|
|
|
| |
PR: 123208
Submitted by: Robin Gruyters <r.gruyters@yirdis.nl> (maintainer)
|
|
|
|
|
| |
PR: 123486
Submitted by: Robin Gruyters <r.gruyters@yirdis.nl> (maintainer)
|
|
|
|
|
| |
PR: 123205
Submitted by: Robin Gruyters <r.gruyters@yirdis.nl> (maintainer)
|