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* Multiple ports:jwb2018-01-311-1/+1
| | | | | | | | Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org Remove Created by comments for same user Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D14128
* Try to bring some consistency to ports that have x86-specific pieces.linimon2017-12-211-7/+7
| | | | | | | | | | | | | | - in general, if we think that the code is not architecture-specific, and instead just enables x86 assembler by default, those should use BROKEN rather than IGNORE. This will allow them to be attempted with TRYBROKEN. - spell i386 as x86. - spell asm as assembler. - pet portlint. These changes should have no effect on tier-1 builds. Approved by: portmgr (tier-2 blanket)
* For ports that are marked BROKEN on armv6, and also fail to build onlinimon2017-11-301-0/+1
| | | | | | | | | | armv7, mark them so. This is part two of a multipart commit to bring armv7 ports to parity with armv6. Approved by: portmgr (tier-2 blanket) Obtained from: lonesome.com -exp run
* Mark some ports failing on power64. In cases where the error messagelinimon2017-05-131-1/+1
| | | | | | | | was a stub, provide a real one. While here, pet portlint. Approved by: portmgr (tier-2 blanket)
* Mark various ports as broken on armv6: invokes x86 asm.linimon2017-02-261-0/+1
| | | | Approved by: portmgr (tier-2 blanket)
* The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.linimon2016-11-091-1/+1
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* Mark broken on all tier-2 archs.linimon2016-11-081-0/+3
| | | | Approved by: portmgr (tier-2 blanket)
* mark some of the ports that don't build on powerpc64 for meswills2015-12-141-0/+2
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* - Update maintainer mail addressmiwi2015-12-111-1/+1
| | | | | | | | | - Update/Remove MASTER_SITE PR: 204755 Submitted by: jwbacon@tds.net (maintainer) Approved by: mat (mentor) Differential Revision: D4493
* - Update to 2015.09.21madpilot2015-10-285-25/+60
| | | | | | | | | | | | - Add License - Add SIMD option disabled by default to avoid creating official packags with CPU specific optimizations - Add pkg-message explaining how to get an optimized binary - Assign maintainership to submitter PR: 203334 Submitted by: jwbacon at tds.net Approved by: Maintainer timeout
* Fix MASTER_SITESantoine2014-09-051-1/+1
| | | | Submitted by: tijl@
* Support stagebapt2013-12-111-3/+3
| | | | | | Convert USE_GMAKE to USES=gmake Add dependency on perl which the port need and was getting by chance bump portrevision, dependencies has changed
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵bapt2013-09-201-5/+2
| | | | biology)
* - fix fetch: wget is not required for fetchingpgollucci2010-12-122-6/+0
| | | | Reported by: QAT
* Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.rafan2008-08-211-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Specifically, newer autoconf (> 2.13) has different semantic of the configure target. In short, one should use --build=CONFIGURE_TARGET instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning and the old semantic may be removed in later autoconf releases. To workaround this issue, many ports hack the CONFIGURE_TARGET variable so that it contains the ``--build='' prefix. To solve this issue, under the fact that some ports still have configure script generated by the old autoconf, we use runtime detection in the do-configure target so that the proper argument can be used. Changes to Mk/*: - Add runtime detection magic in bsd.port.mk - Remove CONFIGURE_TARGET hack in various bsd.*.mk - USE_GNOME=gnometarget is now an no-op Changes to individual ports, other than removing the CONFIGURE_TARGET hack: = pkg-plist changed (due to the ugly CONFIGURE_TARGET prefix in * executables) - comms/gnuradio - science/abinit - science/elmer-fem - science/elmer-matc - science/elmer-meshgen2d - science/elmerfront - science/elmerpost = use x86_64 as ARCH - devel/g-wrap = other changes - print/magicfilter GNU_CONFIGURE -> HAS_CONFIGURE since it's not generated by autoconf Total # of ports modified: 1,027 Total # of ports affected: ~7,000 (set GNU_CONFIGURE to yes) PR: 126524 (obsoletes 52917) Submitted by: rafan Tested on: two pointyhat 7-amd64 exp runs (by pav) Approved by: portmgr (pav)
* [patch] cleanup non-supported FreeBSD versionsedwin2007-04-173-41/+1
| | | | | | PR: ports/111727 Submitted by: Edwin Groothuis <edwin@mavetju.org> Approved by: Bob Zimmermann <rpz@cse.wustl.edu>
* Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNAclsung2006-09-297-0/+104
and EST Sequences. PR: ports/103651 Submitted by: Bob Zimmermann <rpz at cse.wustl.edu>