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they now redirect to anyway. All new urls checked to return 200,
I've fixed a couple of them in the process.
Approved by: portmgr blanket, mat
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Also silenced STRIP_CMD.
Reported by: portscout
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Changelog:
https://github.com/pysam-developers/pysam/releases/tag/v0.14
Reported by: portscout
Approved by: tcberner (mentor, implicit)
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Ports using USE_PYTHON=distutils are now flavored. They will
automatically get flavors (py27, py34, py35, py36) depending on what
versions they support.
There is also a USE_PYTHON=flavors for ports that do not use distutils
but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if
using distutils but flavors are not wanted.
A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
added to cope with Python ports that did not have the Python
PKGNAMEPREFIX but are flavored.
USES=python now also exports a PY_FLAVOR variable that contains the
current python flavor. It can be used in dependency lines when the
port itself is not python flavored. For example, deskutils/calibre.
By default, all the flavors are generated. To only generate flavors
for the versions in PYTHON2_DEFAULT and PYTHON3_DEFAULT, define
BUILD_DEFAULT_PYTHON_FLAVORS in your make.conf.
In all the ports with Python dependencies, the *_DEPENDS entries MUST
end with the flavor so that the framework knows which to build/use.
This is done by appending '@${PY_FLAVOR}' after the origin (or
@${FLAVOR} if in a Python module with Python flavors, as the content
will be the same). For example:
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}
PR: 223071
Reviewed by: portmgr, python
Sponsored by: Absolight
Differential Revision: https://reviews.freebsd.org/D12464
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Approved by: tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D12967
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PR: 223254
Submitted by: Yuri Victorovich <yuri@rawbw.com> (maintainer)
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PR: 219892
Submitted by: yuri@rawbw.com(maintainer)
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PR: 219396
Submitted by: Yuri Victorovich (Maintainer) <yuri@rawbw.com>
Approved by: rene (mentor)
Differential Revision: https://reviews.freebsd.org/D10856
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PR: 219122
Submitted by: maintainer
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read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access
to the command line functionality of the samtools and bcftools packages. The
module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using
cython and a high-level API for convenient access to the data within standard
genomic file formats.
WWW: https://pypi.python.org/pypi/pysam
PR: 218745
Submitted by: Yuri Victorovich <yuri@rawbw.com>
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