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* Update to libmpc version 1.0.1 which brings the following fixes:gerald2013-10-261-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Switched to automake 1.11.6, see CVE-2012-3386. - #14669: Fixed extraction of CC from gmp.h. - Fixed case of intermediate zero real or imaginary part in mpc_fma, found by hydra with GMP_CHECK_RANDOMIZE=1346362345. This is on top of the following changes from version 1.0 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no invariant sections) for the documentation. - 100% of all lines are covered by tests - Renamed functions . mpc_mul_2exp to mpc_mul_2ui . mpc_div_2exp to mpc_div_2ui - 0^0, which returned (NaN,NaN) previously, now returns (1,+0). - Removed compatibility with K&R compilers, which was untestable due to lack of such compilers. - New functions . mpc_log10 . mpc_mul_2si, mpc_div_2si - Speed-ups . mpc_fma - Bug fixes . mpc_div and mpc_norm now return a value indicating the effective rounding direction, as the other functions. . mpc_mul, mpc_sqr and mpc_norm now return correct results even if there are over- or underflows during the computation. . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has infinite part and equals output variable is corrected. . mpc_fr_sub: Wrong return value for imaginary part is corrected. Convert to the new LIB_DEPENDS standard and remove hard-coded .so versions from a couple of dependent ports. Bump PORTREVISIONS of all dependent ports. PR: 183141 Approved by: portmgr (bdrewery)
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵bapt2013-09-201-0/+1
| | | | biology)
* - Update to 1.5.3wen2012-10-083-11/+37
| | | | - Trim Makefile headers
* - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} orswills2012-06-111-1/+1
| | | | | | | | RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned about for a while. PR: ports/168208 Approved by: portmgr (miwi)
* - Update to 1.5.1wen2011-08-113-12/+41
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* - Fix *_DEPENDS after the repocopy of databases/py-sqlalchemynivit2011-06-251-1/+2
| | | | | (This port doesn't yet support SQLAlchemy 0.7.X) - Bump PORTREVISION
* - Update to 1.5.0wen2010-11-103-4/+41
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* - Update to 1.4.1wen2010-06-013-4/+25
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* - Update to 1.4wen2009-12-173-30/+126
| | | | - Update my mail address to FreeBSD
* - Switch SourceForge ports to the new File Release System: categories ↵amdmi32009-08-221-1/+1
| | | | starting with B,C
* PyCogent is a software library for genomic biology. It is a fully integratedmiwi2009-06-224-0/+886
and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data. WWW: http://pycogent.sourceforge.net/ PR: ports/135863 Submitted by: Wen Heping <wenheping at gmail.com>