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* Update to 1.31.0jhale2018-09-031-19/+12
| | | | | PR: 229463 Approved by: Hannes Hauswedell <h2+fbsdports@fsfe.org> (maintainer)
* Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mktcberner2018-06-291-2/+2
| | | | | | | | | | | | | | | From now on, ports that depend on Qt4 will have to set USES= qt:4 USE_QT= foo bar ports depending on Qt5 will use USES= qt:5 USE_QT= foo bar PR: 229225 Exp-run by: antoine Reviewed by: mat Approved by: portmgr (antoine) Differential Revision: →https://reviews.freebsd.org/D15540
* Add upstream patch to fix the build with Qt 5.10.rakuco2018-05-161-1/+1
| | | | | | | | _tmp/ui/ui_Bowtie2Settings.h:189:35: error: no viable conversion from 'QLatin1String' to 'const QKeySequence' gbarCheckBox->setShortcut(QLatin1String("")); ^~~~~~~~~~~~~~~~~ PR: 228213
* Remove USES=execinfo.mat2017-09-221-1/+1
| | | | | | | PR: 220271 Submitted by: mat (review), Yasuhiro KIMURA (PR) Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D11488
* Revision bump of all ports with USE_GL after consolidation of mesa-libsrezny2017-05-231-1/+1
| | | | | Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D10845
* - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOLamdmi32017-01-091-5/+3
| | | | Approved by: portmgr blanket
* The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.linimon2016-11-091-1/+1
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* Mark as broken on arm64.linimon2016-11-081-0/+2
| | | | Approved by: portmgr (tier-2 blanket)
* During the exp-run in bug 208158, it was found that biology/ugene givesdim2016-05-081-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | errors with libc++ 3.8.0: In file included from src/QScoreAdapter.cpp:1: In file included from src/QScoreAdapter.h:4: In file included from ../../include/U2Core/MAlignment.h:1: In file included from ../../include/U2Core/../../corelibs/U2Core/src/datatype/MAlignment.h:25: In file included from ../../include/U2Core/../../corelibs/U2Core/src/datatype/MAlignmentInfo.h:25: In file included from /usr/local/include/qt5/QtCore/QString:1: In file included from /usr/local/include/qt5/QtCore/qstring.h:41: In file included from /usr/local/include/qt5/QtCore/qchar.h:37: In file included from /usr/local/include/qt5/QtCore/qglobal.h:39: /usr/include/c++/v1/cstddef:43:15: fatal error: 'stddef.h' file not found #include_next <stddef.h> ^ This is because the port tries to add /usr/include as a system include directory, using -isystem, and this screws up the order of include directories. Fix it by patching up a number of .pri files to avoid using the -isystem flag. Approved by: h2+fbsdports@fsfe.org (maintainer) PR: 209366 MFH: 2016Q2
* Update to version 1.22.0, which now unfortunately requires Qt 5.x. Alsodanfe2016-04-141-13/+12
| | | | | | | since around v1.18.0, UGENE is using Google's Breakpad library for crash reporting, which is very system-specific and does not support FreeBSD at the moment. Due to lack of resources and interest in porting it, simply disable crash reporting code for the time being.
* Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.mat2016-04-011-1/+1
| | | | | With hat: portmgr Sponsored by: Absolight
* biology/ugene: qt4-linguist -> qt4-linguisttoolspgollucci2015-08-191-2/+3
| | | | | | | | - add USES=desktop-file-utils PR: 202138 Submitted by: s3erios@gmail.com Approved by: h2+fbsdports@fsfe.org
* - Update Unipro UGENE to version 1.17.0 (documentation was also rerolled)danfe2015-07-151-8/+3
| | | | - Remove no longer required local source code tweaks (picked up upstream)
* Update Unipro UGENE to version 1.16.2.danfe2015-05-281-1/+1
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* - Update to version 1.16.1danfe2015-03-231-6/+5
| | | | | | | - Explicitly list all required Qt components in USE_QT4 instead of relying on them being silently picked up through `www/webkit-qt4' dependency - Group *_build components together while here - Remove one REINPLACE_CMD call that is no longer needed
* Update Unipro UGENE to version 1.16.0 (documentation was also rerolled).danfe2015-02-241-1/+3
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* Update to version 1.15.1.danfe2015-01-061-1/+1
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* Update to version 1.15.0.danfe2014-12-031-6/+4
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* Update to version 1.14.2.danfe2014-10-131-2/+6
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* Update the default version of GCC in the Ports Collection from GCC 4.7.4gerald2014-09-111-0/+1
| | | | | | | | | | to GCC 4.8.3. Part II, Bump PORTREVISIONs. PR: 192025 Tested by: antoine (-exp runs) Approved by: portmgr (implicit)
* - Update Unipro UGENE and documentation to version 1.14.0danfe2014-09-011-43/+20
| | | | | | | - Remove patches integrated upstream (it's nice to have direct contact) - Sort USES and pkg-plist, cleanup Makefile a bit while here Approved by: maintainer (implicit)
* USES=execinfobapt2014-08-051-4/+1
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* Update to version 1.13.1.danfe2014-03-071-1/+1
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* Unbreak the fetch: one of the documentation PDF files was rerolled.danfe2014-01-301-2/+0
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* - Mark BROKEN because it does not fetchdecke2014-01-301-0/+2
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* - Update to version 1.13.0 and improve FreeBSD support; it also buildsdanfe2014-01-171-9/+36
| | | | | | | | | | pretty cleanly with GCC v4.2, v4.6, and Clang (modulo a few warnings) - Sadly, do not use PORTDOCS: since DOCSDIR is set to be inside DATADIR, and will get appended to PLIST after @dirrm %%DATADIR%%, which upsets sanity checking tools; instead, list the docs explicitly in DISTFILES and add them to pkg-plist (guarded by %%PORTDOCS%%) Tested on: i386 (only)
* - Install official UGENE documentation (PDF)danfe2013-11-011-0/+13
| | | | - Utilize DIST_SUBDIR as now it's more than one distfile
* - Update to version 1.12.3danfe2013-10-311-14/+27
| | | | | | | | | - Conditionalize dependency on `devel/libexecinfo' - Try to detect SSE2 support - Convert to USES=qmake and stafigy - Improve grammar in port description while here Approved by: maintainer (implicit)
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵bapt2013-09-201-0/+1
| | | | biology)
* - Remove MAKE_JOBS_SAFE variableak2013-08-151-1/+0
| | | | Approved by: portmgr (bdrewery)
* Unbreak on 7.X and i386 systems.danfe2013-02-251-0/+3
| | | | Reported by: QAT
* Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.danfe2013-02-231-0/+48
PR: ports/173387 Submitted by: Hannes Hauswedell
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