aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Collapse)AuthorAgeFilesLines
* Bump PORTEPOCH. 3.6 < 3.62arved2005-04-221-0/+1
| | | | Pointyhat to: arved
* Upgrade to 3.62arved2005-04-212-3/+3
| | | | | PR: 79234 Submitted by: David A. Bader <dbader@ece.unm.edu>
* - update grappa to 2.0leeym2005-04-164-29/+13
| | | | | | | | | - utilize PLIST_FILES - unbreak it on 4.x - update maintainer's email PR: 79241 Submitted by: David A. Bader <dbader@ece.unm.edu>
* At Kris's request, back out the MACHINE_ARCH spelling correction untilobrien2005-04-129-9/+9
| | | | after 5.4-RELEASE.
* - Change maintainer's email address.flz2005-04-121-1/+1
|
* - ARCH is defined in bsd.port.pre.mkflz2005-04-111-1/+3
|
* Assist getting more ports working on AMD64 by obeying theobrien2005-04-119-9/+9
| | | | Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.
* Upgrade to 0.5 and take maintainership.thierry2005-04-094-9/+25
| | | | | | | | Remark: still broken on FreeBSD-5.x. PR: ports/79304 Submitted by: Fernan Aguero (new maintainer) Approved by: Tony Maher (previous maintainer)
* Try to unbreak on amd64 and ia64kris2005-03-271-1/+1
| | | | Approved by: portmgr (self)
* BROKEN: Unfetchablekris2005-03-271-0/+2
| | | | Approved by: portmgr (self)
* Fix build on amd64maho2005-03-241-2/+11
| | | | | Submitted by: kris via pointy hat Approved by: portmgr (marcus)
* - Add 'java' categoryhq2005-03-201-2/+1
| | | | | | | - Remove incorrect (and unneeded) JAVA_RUN statement PR: 78761 Submitted by: me
* - Fix man page damage I did last nightpav2005-03-201-7/+9
| | | | Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
* - Update to 2.2.10 from 20041020pav2005-03-206-196/+161
| | | | | | | | | - Transfer maintainership PR: ports/67735 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Approved by: old maintainer indirectly in http://lists.freebsd.org/pipermail/freebsd-ports-bugs/2004-June/035351.html
* From the PR:danfe2005-03-182-4/+16
| | | | | | | | | | | | | | | | I've added PORTREVISION to the port and set it to the release date as in the lang/gcc* ports. Since the distinfo file is not used, this would help users know when they have to update their ports. Although newer release might be made, the idea is to bump PORTREVISION for important feature releases on when significant bugs are fixed. Other minor (cosmetic) changes also applied. PR: ports/78963 Sumbitted by: maintainer
* Bump PORTREVISION to chase the glib20 shared lib version change.marcus2005-03-124-3/+4
|
* - biology/act is redundant after biology/artemis updatesem2005-03-125-1648/+0
| | | | | | PR: ports/76217 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: maintainer timeout (2 monthes)
* - Update to version 6sem2005-03-124-1505/+1529
| | | | | | | | - Pass maintainership to submitter PR: ports/76219 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: maintainer timeout (2 monthes)
* Add finchtv 1.3.0, a chromatogram trace viewer.thierry2005-03-126-0/+209
| | | | | PR: 70271 Submitted by: Fernan Aguero <fernan (at) iib.unsam.edu.ar>
* Fix build on 4.xkrion2005-02-191-0/+4
| | | | | PR: ports/77697 Submitted by: Sam Lawrance <boris at brooknet.com.au>
* As previously announced, remove ports that have reached their expiry date,kris2005-02-197-455/+0
| | | | and the handful of ports that depended on them.
* Update to version 2.0.3krion2005-02-183-10/+13
| | | | | PR: ports/77676 Submitted by: Sam Lawrance <boris at brooknet.com.au>
* Readd mistakenly removed patch to honour CC/CFLAGS.krion2005-02-181-0/+43
|
* Update to version 1.40krion2005-02-183-47/+6
| | | | | PR: ports/77675 Submitted by: Sam Lawrance <boris at brooknet.com.au>
* Fix unfetchable tarball, it was renamed and relocated on originalkrion2005-02-182-4/+4
| | | | | | | server. PR: ports/77674 Submitted by: Sam Lawrance <boris at brooknet.com.au>
* - Add (or fix) CONFLICTS line. The ports install bin/digest.sem2005-02-121-0/+2
| | | | Approved by: portmgr (krion)
* update to 0.97maho2005-02-074-338/+380
|
* With portmgr hat on, reset maintainership of this port. All of wjv'slinimon2005-01-221-1/+1
| | | | | other ports were reset a couple of months ago; this one appears to have been missed.
* o update to 4.3maho2005-01-202-7/+4
| | | | | o unbreak o due to no fix for long period, drop maintainership to ports.
* Update to 0.6.2.knu2004-12-263-7/+26
|
* This port is scheduled to be removed on 2005-02-18 if it is stillkris2004-12-192-0/+4
| | | | broken at that time, and a fix has not been submitted to GNATS.
* Update to version 2.0.8krion2004-12-193-10/+19
| | | | | PR: ports/75106 Submitted by: Ports Fury
* - Update to 2004.12.16sem2004-12-182-3/+3
| | | | | PR: ports/75205 Submitted by: maintainer
* Clean up wording of IGNORE output.linimon2004-12-171-1/+1
|
* Unquote the IGNORE string.linimon2004-12-171-1/+1
|
* With portmgr hat on, switch from BROKEN to ignore. It does indeed build.linimon2004-12-171-1/+1
|
* - Fix OPTIONS handlingpav2004-12-121-3/+1
| | | | Pointy hat to: sem
* Not a real update with the last patch.sem2004-12-112-4/+5
| | | | The real update here.
* - This update brings seaview to the latest release (dated 09.24.04sem2004-12-111-1/+1
| | | | | | | | | | | in the FTP site). - While here add a modeline for vi, and fix a tab (cosmetic) - Make portlint happy. PR: ports/74897 Submitted by: maintainer
* - Add some sites I found with Google, as old master site don't have thispav2004-12-091-1/+4
| | | | | | version anymore Reported by: pointyhat via krion
* BROKEN: Broken distinfo filekris2004-12-041-0/+2
|
* Fix build on Python 2.4perky2004-12-021-0/+14
| | | | Spotted by: kris
* Update MASTER_SITES and WWW: linekrion2004-11-272-2/+2
| | | | | PR: ports/74421 Submitted by: Ports Fury
* [new port] biology/embassysem2004-11-275-0/+271
| | | | | PR: ports/74330 Submitted by: Fernan Aguero <fernan(at)iib.unsam.edu.ar>
* - Update to 2.9.0sem2004-11-269-1812/+1632
| | | | | | | - Pass maintainership to submitter PR: ports/74333 Submitted by: Fernan Aguero <fernan(at)iib.unsam.edu.ar>
* Add missing fileskris2004-11-261-0/+11
|
* - Update to 2.03sem2004-11-267-384/+175
| | | | | | | - Pass maintainership to submitter PR: ports/74332 Submitted by: Fernan Aguero <fernan(at)iib.unsam.edu.ar>
* - Remove a junk white space.sem2004-11-261-1/+1
|
* - Update to 2.3.2sem2004-11-265-69/+38
| | | | | | | | - Add WITH_PVM knob - Pass maintainership to submitter PR: ports/74331 Submitted by: Fernan Aguero <fernan(at)iib.unsam.edu.ar>
* Minor cleanup.linimon2004-11-231-2/+2
| | | | | PR: ports/72094 Submitted by: M. L. Dodson <bdodson at scms dot utmb dot edu> (maintainer)
* - Update biology/biojava to 1.30vs2004-11-223-613/+255
| | | | | | | | | - Install javadoc and example files - Assign maintainership to submitter PR: ports/73391 Submitted by: Cheng-Dae Choe Add. reviewing: hq@
* With portmgr hat on, reset inactive maintainer. These ports are now uplinimon2004-11-208-8/+8
| | | | for adoption.
* With portmgr hat on, reset inactive maintainer.linimon2004-11-201-1/+1
|
* - Distfiles change every few days, so drop md5 checking on thempav2004-11-182-4/+5
| | | | Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
* Add blast, a powerful software package for gene and protein identification,pav2004-11-126-0/+324
| | | | | | | | using sensitive, selective and rapid similarity searches of protein and nucleotide sequence databases. PR: ports/69636 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar>
* Bump PORTREVISIONS for all ports that depend on atk or pango to ease in themarcus2004-11-084-4/+4
| | | | big upgrade.
* - Fix build on amd64 (crude hack to pass -fPIC to c++ compiles)pav2004-11-071-0/+11
| | | | | Reported by: pointyhat via kris Tested on: arved's box
* Update to 3.14kevlo2004-11-063-5/+4
| | | | | PR: ports/72422 Submitted by: Choe, Cheng-Dae <whitekid@gmail.com>
* Correct a typo: s/linux-opera/linux-openmotif/g.mezz2004-11-021-1/+1
|
* - Update to 2004.06.16pav2004-11-024-167/+276
| | | | | Inspired by: ports/72726 Approved by: maintainer timeout (2 weeks)
* Chase the linux-openmotif shared library version and mark biology/spdbv asmezz2004-11-021-1/+4
| | | | | | | | broke, I get no respone from the maintainer since Oct 22, 2004. The www/linux-opera works fine with new linux-openmotif. Also, bump PORTREVISION. To fix or update for biology/spdbv is welcome, I shall commit them if I get patch(es) in my Inbox.
* Now installs on FreeBSD 5.x.kris2004-10-291-7/+1
|
* - Update to 1.30pav2004-10-283-128/+209
| | | | | | PR: ports/71400 Submitted by: Stefan Walter <sw@gegenunendlich.de> Approved by: maintainer timeout (2 months)
* Avoid the use of != statements in ports Makefilemaho2004-10-241-1/+5
| | | | | PR: 71095 Submitted by: eik
* - Update to 3.62pav2004-10-123-6/+16
| | | | | | | | - Install font files PR: ports/72212 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: David A. Bader <dbader@ece.unm.edu> (maintainer)
* BROKEN on 5.x: Does not compilekris2004-09-291-1/+7
| | | | Approved by: portmgr (self)
* Upgrade to latest revision to make fetchable again.thierry2004-09-252-3/+3
| | | | Approved by: portmgr (marcus)
* Update config.h and unbreak.thierry2004-09-241-2/+2
| | | | | | PR: ports/71505 Submitted by: maintainer Approved by: portmgr (marcus).
* The build should be fixed now, so remove BROKEN mark.danfe2004-09-231-7/+1
| | | | Approved by: portmgr (marcus), fjoe (mentor, implicit)
* BROKEN on 5.x: Does not compilekris2004-09-191-1/+7
| | | | Approved by: portmgr (self)
* BROKEN on 5.x: Does not installkris2004-09-191-0/+4
| | | | Approved by: portmgr (self)
* BROKEN on 5.x: Does not installkris2004-09-191-0/+4
| | | | Approved by: portmgr (self)
* Unbreak the build on 5.X and -CURRENT.danfe2004-09-181-0/+44
| | | | | Reported by: pointyhat.freebsd.org Approved by: portmgr (marcus), fjoe (mentor, implicit)
* BROKEN on 5.x: Does not compilekris2004-09-181-1/+7
| | | | Approved by: portmgr (self)
* - add missing MAN1 and MAN3leeym2004-09-042-357/+537
| | | | | | | | | - apply DATADIR, EXAMPLESDIR, and DOCSDIR in PLIST - update the usage of NOPORTDOCS PR: 71322 Submitted by: leeym Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar>
* - Unbreak by upgrading to 4.2;thierry2004-08-204-444/+387
| | | | | | | | - Use DIST_SUBDIR because tarball is not versioned; - Add sysdate to PORTVERSION to handle minor revisions; - Do some cleaning.
* biology/lsysexp is not brokenedwin2004-08-181-3/+5
| | | | | | | fix gtk build error PR: ports/70598 Submitted by: David Yeske <dyeske@yahoo.com>
* This is now buildable on 5.x, remove BROKEN.kris2004-08-171-7/+1
|
* After devel/p5-File-Temp has gained an IGNORE for PERL_LEVEL > 500800, allmat2004-08-121-1/+3
| | | | | these ports were broken because they always depended on it. I've rearranged all the dependencies to fit the new scheme.
* - Update to 5.2pav2004-07-312-3/+13
| | | | | PR: ports/69799 Submitted by: Jan Lentfer <Jan.Lentfer@web.de> (maintainer)
* Use X_IMAKE_PORT instead of dist-specific imake dependencies. While here,anholt2004-07-241-6/+3
| | | | make the BROKEN message a little more informative.
* Update to version 2.7.2.1.1krion2004-07-105-42/+35
| | | | | PR: ports/68861 Submitted by: Ports Fury
* Apply a big libtool patch to allow porters to use the libtool installed bymarcus2004-07-101-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | the libtoolX ports instead of the one included with each port. Ports that set USE_LIBTOOL_VER=X will now use the ports version of libtool instead of the included version. To restore previous behavior, use the new macro, USE_INC_LIBTOOL_VER. Both macros accept the same argument: a libtool version. For example, to use the ports version of libtool-1.5, add the following to your Makefile: USE_LIBTOOL_VER= 15 To use the included version of libtool with extra hacks provided by libtool-1.5, add the following to your Makefile: USE_INC_LIBTOOL_VER= 15 With this change, ports that had to add additional libtool hacks to prevent .la files from being installed or to fix certain threading issues can now delete those hacks (after appropriate testing, of course). PR: 63944 Based on work by:eik and marcus Approved by: ade (autotools maintainer) Tested by: kris on pointyhat Bound to be hidden problems: You bet
* Fix distsitevs2004-07-061-2/+1
| | | | | | PR: ports/67473 Submitted by: Roman Neuhauser Approved by: maintainer timeout
* BROKEN: Checksum mismatchkris2004-07-031-0/+2
|
* Update to 4.6vs2004-07-027-51/+58
| | | | | PR: ports/68561 Submitted by: maintainer
* BROKEN: Does not buildkris2004-07-021-0/+2
|
* Update to fix fetch. Rework PORTVERSION to be more like biology/fasta3linimon2004-07-014-9/+11
| | | | | | | | and pacify portlint. PR: ports/67428 Submitted by: Roman Neuhauser <neuhauser at chello dot cz> Approved by: maintainer timeout (one month)
* Chase mastersite and fix checksum to unbreak. (Changes are inclusion of alinimon2004-07-012-8/+4
| | | | | | | | | logfile, one Linux-only change, and one change in a test script). Assign submitter as new maintainer as current one has not responded to PRs for some time. PR: ports/68199 Submitted by: Fernan Aguero <fernan at iib dot unsam dot edu dot ar>
* Update to 1.7.6.1.linimon2004-06-304-11/+43
| | | | | | PR: ports/67429 Submitted by: Roman Neuhauser <neuhauser at chello dot cz> Approved by: maintainer timeout (4 weeks)
* Drop maintainershiplioux2004-06-241-1/+1
|
* Fix MASTER_SITES:vs2004-06-231-2/+2
| | | | | | | | | - add trailing slash - ftp.ebi.ac.uk only has 2.8.0 PR: ports/67427 Submitted by: Roman Neuhauser Approved by: maintainer timeout
* Add ariadne 1.3, programs to compare protein sequences andkrion2004-06-225-0/+60
| | | | | | | profiles, using the Smith-Waterman algorithm. PR: ports/67811 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar>
* Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDENkris2004-06-222-1/+5
| | | | | ports. They will be removed on or after that date if they are still broken and no fix has been submitted to GNATS.
* BROKEN: Checksum mismatchkris2004-06-201-0/+2
|
* Replace explicit imake dependency with USE_IMAKE=yesanholt2004-06-181-5/+1
|
* Update to 20040613 releaselioux2004-06-132-3/+3
|
* - Remove obsolete MASTER_SITESkrion2004-06-081-2/+1
| | | | | PR: ports/67690 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* - Update MASTER_SITESpav2004-06-021-3/+3
| | | | | PR: ports/67472 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* [PATCH] biology/mopac patchsite fixedwin2004-06-011-1/+1
| | | | | | | | | | | | this is a followup to ports/67432 I completely overlooked the fact that the port was setting PATCH_SITES, here's a fix for that maintainer cc'd PR: ports/67441 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* [PATCH] biology/mopac distsite fixedwin2004-06-011-1/+1
| | | | | | | connection refused (portsurvey reports timeouts) PR: ports/67432 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* [PATCH] biology/gff2ps distsite fixedwin2004-06-011-3/+3
| | | | | | | couple distfiles with their respective urls to reduce time and traffic PR: ports/67430 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* - Update WWWpav2004-05-301-1/+1
|
* - Fix MASTER_SITESkrion2004-05-231-4/+1
| | | | | PR: ports/67045 Submitted by: Stefan Walter <sw@gegenunendlich.de>
* - Remove long time unresponsive MASTER_SITEpav2004-05-221-1/+0
| | | | | PR: ports/67016 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* - Update MASTER_SITES and WWW: linekrion2004-05-222-2/+2
| | | | | PR: ports/67015 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* Add forgotten patches...thierry2004-05-214-2/+62
|
* BROKEN: Broken pkg-plistkris2004-05-211-0/+2
|
* unbreak, only minor changes in the distfiles (see PR)eik2004-05-182-8/+7
| | | | | | | | Since the distfile has no version number, put it in DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} PR: 66817 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer)
* Add a missing BUILD_DEPENDS.thierry2004-05-111-0/+1
| | | | Reported by: Kris.
* Upgrade to 2.0b7 and unbreak.thierry2004-05-117-113/+128
|
* Fix MASTER_SITESmarkus2004-05-091-1/+1
|
* Make portlint happy by replacing space to tabmaho2004-05-072-4/+4
| | | | | PR: 65409 Submitted by: trevor
* - update to 4.5.3petef2004-05-026-17/+235
| | | | | | | - remove version from pkg-descr PR: 65972 Submitted by: maintainer
* - Honor CFLAGSkrion2004-04-161-1/+1
| | | | | PR: ports/65599 Submitted by: michael johnson <ahze at ahze dot net>
* BROKEN: Checksum mismatchkris2004-04-121-0/+2
|
* Mark this port BROKEN with gtk+-2.4.marcus2004-04-111-0/+2
| | | | Reported by: bento via kris
* Tidy up whitespace.trevor2004-04-112-6/+6
|
* Trim whitespace.trevor2004-04-112-66/+66
|
* Add openbabel dependency (bento log forwarded by kris).trevor2004-04-091-0/+2
|
* Update to 1.7.8.trevor2004-04-083-16/+16
|
* After patching, remove the carriage-return characters from povchem.ctrevor2004-04-071-0/+2
| | | | | | because they because they choke GCC 2.95.4. noticed by: kris
* Chase home page.trevor2004-04-071-1/+1
|
* Fix build with gtk 2.4.adamw2004-04-051-1/+6
|
* Chase the glib20 update, and bump all affected ports' PORTREVISIONs.marcus2004-04-054-3/+4
|
* Remove category pkg/COMMENT files in favour of a COMMENT variable in thekris2004-04-022-1/+2
| | | | | | | category makefile. Submitted by: Matthew Seaman <m.seaman@infracaninophile.co.uk> PR: 59651
* SIZEify (maintainer timeout)trevor2004-03-3134-0/+38
|
* Add SIZE data.knu2004-03-221-0/+1
| | | | Submitted by: trevor
* Do not hardcord PICFLAGmaho2004-03-201-7/+1
| | | | Submitted by: ru
* Backout previous change of PICFLAG, sincemaho2004-03-191-0/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | behaviour of -fPIC and -fpic are different. Here is the comment form obrien: -- "-fpic" is a [minor?] optimization for machines that can handle it: -fpic Generate position-independent code (PIC) suitable for use in a shared library, if supported for the target machine. Such code accesses all constant addresses through a global offset table (GOT). The dynamic loader resolves the GOT entries when the program starts (the dynamic loader is not part of GCC; it is part of the operating system). If the GOT size for the linked executable exceeds a machine-specific maximum size, you get an error message from the linker indicating that -fpic does not work; in that case, recompile with -fPIC instead. (These maximums are 16k on the m88k, 8k on the SPARC, and 32k on the m68k and RS/6000. The 386 has no such limit.) -fPIC If supported for the target machine, emit position-independent code, suitable for dynamic linking and avoiding any limit on the size of the global offset table. This option makes a difference on the m68k, m88k, and the SPARC. Thanks to: obrien
* -fPIC is appropreate on all architectures.maho2004-03-191-6/+0
| | | | Submitted by: kris
* Add size data, approved by maintainers.trevor2004-03-191-0/+1
|
* 1) Silent version up without changing the version numbermaho2004-03-183-6/+6
| | | | | | | | very minor change in README 2) change WWW: section at pkg-descr 3) SIZEify Submitted by: kris via bento
* Add size data.trevor2004-03-181-0/+1
| | | | Approved by: maintainers
* SIZEify.trevor2004-03-182-0/+2
|
* 1) update to 0.9.3maho2004-03-175-11/+44
| | | | | | 2) honor PREFIX & LOCALBASE 3) SIZEify 4) possible fix for amd64 and ia64
* Whoa there, boy, that's a mighty big commit y'all have there...ade2004-03-141-1/+1
| | | | | | | | | | | | | | | Begin autotools sanitization sequence by requiring ports to explicitly specify which version of {libtool,autoconf,automake} they need, erasing the concept of a "system default". For ports-in-waiting: USE_LIBTOOL=YES -> USE_LIBTOOL_VER=13 USE_AUTOCONF=YES -> USE_AUTOCONF_VER=213 USE_AUTOMAKE=YES -> USE_AUTOMAKE_VER=14 Ports attempting to use the old style system after June 1st 2004 will be sorely disappointed.
* - Update to version 2003.09.21krion2004-03-124-15/+9
| | | | | PR: ports/64160 Submitted by: Liam J. Foy <liamfoy@sepulcrum.org>
* Insert "-l" into PATCH_ARGS, to cause the "patch" command to ignoretrevor2004-03-091-0/+1
| | | | | carriage-return characters in povchem.c which otherwise cause patch-ab to fail to apply.
* Add MD5 of 2004-01-06 version of povchem.c. Its contents aretrevor2004-03-091-1/+1
| | | | | identical to the 1999-08-22 version, except that the new file has a carriage return character added at the end of each line, DOS-style.
* Unmark as broken for 4.x; instead, mark as ignore for perl < 5.6.linimon2004-03-081-2/+2
|
* BROKEN on amd64 and ia64: Does not compile (missing -fPIC)kris2004-03-071-1/+7
|
* Maintainer reports being unable to look after this port any longer.linimon2004-03-071-1/+1
| | | | Thanks for your efforts in the past.
* - Update to version 0.4krion2004-02-282-3/+3
| | | | | PR: ports/63478 Submitted by: maintainer
* - Fix MASTER_SITESkrion2004-02-281-1/+1
| | | | | PR: ports/63469 Submitted by: maintainer
* Update to 20040226 releaselioux2004-02-273-3/+10
|
* BROKEN on alpha: Does not compilekris2004-02-231-1/+7
|
* BROKEN on alpha 5.x: does not compilekris2004-02-231-1/+7
|
* BROKEN: Checksum mismatchkris2004-02-221-0/+2
|
* BROKEN on 4.x: Configure failskris2004-02-221-1/+7
|
* BROKEN: Does not fetchkris2004-02-221-0/+2
|
* BROKEN: Checksum mismatchkris2004-02-221-0/+2
|
* Upgrade to 1.23.des2004-02-106-1001/+1125
| | | | Approved by: maintainer timeout
* USE_SIZEifylioux2004-02-082-0/+2
|
* Correct whitespace in COMMENTkris2004-02-071-1/+1
|
* Use PLIST_FILES (bento-tested, marcus-reviewed).trevor2004-02-0610-5/+5
|
* Use PLIST_FILES.trevor2004-02-062-1/+1
| | | | Reviewed by: marcus
* Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.marcus2004-02-0417-5/+17
| | | | (Part 2)
* - Fix build on AMD64krion2004-02-022-2/+41
| | | | - Use DOCSDIR
* - Update to 3.6.bpav2004-02-012-4/+3
| | | | | PR: ports/62142 Submitted by: David A. Bader <dbader@ece.unm.edu> (maintainer)
* - Update to version 2003.11.25krion2004-01-292-2/+2
|
* Add SIZE.trevor2004-01-289-0/+11
|
* Yet another C++ fix.naddy2004-01-261-1/+9
| | | | Reported by: kris (bento)
* Use the CPIO macro defined in bsd.port.mk.trevor2004-01-221-1/+1
|
* Major update from 0.7.2 to 1.4 by new maintainer. This is almost a completelinimon2004-01-216-405/+1689
| | | | | | | | | | | | | | | | | | | | rework of the port. See the page http://news.open-bio.org/archives/cat_bioperl.html for the changes between 1.2 and 1.4. The older changes are in the CVS tree. From the new maintainer: Note that this new port just handles the installation of bioperl and not of additional extra stuff (bioperl-gui, bioperl-corba-server, bioperl-corba-client). This is unlike the behaviour of the current port. The extra stuff, though still functional, had very little adoption among users, and does not appear to be currently supported/maintained. PR: ports/47303 (and subsequent) Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer)
* silent updates of archives:maho2003-12-283-4/+8
| | | | | | | | | a) program: Draw the hydrophobicity function F5 b) documentation: add very minor description not related FreeBSD. 1) bump portrevision 2) several clean ups for Makefile
* - Fix MASTER_SITESkrion2003-12-201-1/+1
| | | | | PR: 60417 Submitted by: maintainer
* Mark as broken on 5.x due to the usual gcc terminating-character hassles.linimon2003-12-191-1/+7
| | | | Notified mainatainer.
* - Update to last snapshotpav2003-12-072-9/+6
| | | | | PR: ports/58511 (based on) Submitted by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> (maintainer)
* - Update checksum again, seems author removes .ps version of documentationpav2003-11-224-467/+31
| | | | | | | from tarball - Unmark broken, it builds for me just fine Approved by: adamw (mentor)
* Define USE_PERL5_BUILD, not erroneous USE_PERL.trevor2003-11-202-2/+2
| | | | Submitted by: Oliver Eikemeier
* Define USE_PERL to make Perl available for (mostly deprecated)trevor2003-11-202-0/+2
| | | | "perl -pi -e" construction.
* - Unbreak on 5.xpav2003-11-203-7/+54
| | | | Approved by: adamw (mentor)
* - Update to new version 2003.11.17krion2003-11-176-66/+17
| | | | - Unbreak this port
* unPERLify by using REINPLACE_CMD and SED where appropriate.marcus2003-11-162-3/+1
| | | | | PR: 47654 Submitted by: Simon 'portlint' Schubert <corecode@corecode.ath.cx>
* Switch to wxgtk2.fjoe2003-11-141-1/+2
|
* Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.trevor2003-11-133-3/+3
|
* Remove my e-mail address from comment blocks of portstrevor2003-11-131-1/+1
| | | | I have contributed, in hopes of attracting less spam.
* wxgtk-devel -> wxgtkfjoe2003-11-101-1/+2
|
* - Switch to wxgtk2fjoe2003-11-101-7/+9
| | | | - USE_MESA -> USE_GL
* LIB_DEPENDS on libglut for libglut rather than soon-to-disappear Mesa3.anholt2003-11-081-1/+1
|
* Update to 2.0.7.adamw2003-11-083-4/+7
|
* Mark BROKEN: distfile has changed.anholt2003-11-071-0/+2
|
* ${MASTER_SITES} are slow. This patch adds a mirror site to helpjeh2003-11-061-1/+2
| | | | | | | | fetch work more frequently. This patch patches the Makefile from PORTSDIR}/biology PR: 58130 Submitted by: MAINTAINER
* Make this port use wxgtk 2.4.2.fjoe2003-11-053-7/+19
|
* Chase wxgtk library name (and version) change.fjoe2003-11-051-1/+1
|
* Pet portlint.linimon2003-11-041-1/+1
|
* Date: Tue, 04 Nov 2003 00:42:55 +0900edwin2003-11-041-1/+1
| | | | | | | | | | | | | | | | From: Motomichi Matsuzaki <mzaki@e-mail.ne.jp> Subject: Re: question about FreeBSD ports you maintain Briefly, I have no time for maintaining ports. So I wish to leave the maintainer position of these ports: biology/fastdnaml textproc/wv Thanks you for maintaining the FreeBSD system. Best regards, Motomichi Matsuzaki
* Mark BROKEN (see bento logs). These ports are scheduled for removalkris2003-11-031-1/+1
| | | | | after Feb 2 2004 if they are still broken at that time and no fixes have been submitted by PR.
* ports with possibly unreachable MAINTAINERsedwin2003-11-022-2/+2
| | | | | | | *** addresses that seem to be dead: PR: ports/58694 Submitted by: Oliver Eikemeier <eikemeier@fillmore-labs.com>
* Chased new mastersite per distfile survey. Notified maintainer.linimon2003-10-261-1/+1
|
* utilize SITE_PERLijliao2003-10-244-387/+385
| | | | | PR: 58166 Submitted by: Cheng-Lung Sung <clsung@dragon2.net>
* Respect CC and CFLAGSkris2003-10-231-5/+11
|
* Cosmetic fix: use %%DOCSDIR%% macro.osa2003-10-2231-1259/+1259
| | | | | | | No functionally changes. Submitted by: Oleg Karachevtsev <ok@etrust.ru> A part of PR: 57992
* - Update to 0.5.2krion2003-10-213-297/+298
| | | | | PR: 58304 Submitted by: Clement Laforet <sheepkiller@cultdeadsheep.org>
* Don't remove share/java/classes system directory.kris2003-10-191-1/+0
|
* Fixes the checksum problem, but doesn't fix the port; adds a BROKENlinimon2003-10-162-2/+3
| | | | | | | line about how it fails. Some other interested person will have to take it from here. PR: 56882
* Update to 0.5.3.knu2003-10-153-2/+4
|
* update biology/nab: 4.5.1 -> 4.5.2daichi2003-10-145-20/+38
| | | | | PR: 57970 Submitted by: M. L. Dodson <bdodson@scms.utmb.edu> (maintainer)
* BROKEN: Broken pkg-plistkris2003-10-131-0/+2
|
* BROKEN: Does not fetchkris2003-10-131-0/+2
|
* Port update (maintainer): biology/wiseedwin2003-09-242-2/+2
| | | | | | | | | Fenner's porsurvey show wise no longer available at original site. Original site readme shows it has moved so update the MASTER_SITES accordingly. PR: ports/57154 Submmited by: Tony Maher <tonymaher@optushome.com.au>
* Make portlint(1) happy by changing strip to ${STRIP_CMD}osa2003-09-242-2/+2
| | | | | Submitted by: Oleg Karachevtsev <ok@etrust.ru> PR: 56998
* Update port: biology/gperiodic to 2.0.6edwin2003-09-083-4/+5
| | | | | | | - Update to version 2.0.6 PR: ports/56522 Submitted by: KATO Tsuguru <tkato@prontomail.com>
* new port:biology/lsysexpedwin2003-09-035-0/+71
| | | | | | | | | | | | | | | | | | L-system Explorer is a program used for viewing and creating L-system fractals. The following features are supported: - Over 500 builtin L-systems, arranged into about 20 groups. - Ability to create and save custom L-systems and L-system groups. - Abilty to save images of L-systems (in PNG or JPEG format). - Multiple L-systems can be viewed at the same time. - Able to use custom colors and gradients. - Can also generate random gradients, or completely random colors. - Able to draw using lines, points, or a random combination of both. PR: iports/51400 Submitted by: David Yeske <dyeske@yahoo.com>
* Silent changes to the port distfile which *not* have significantmaho2003-09-021-2/+2
| | | | | | | | functional differences. just changing very minor change of documatation, adding very minor functionality and some cleanup for coding Submitted by: bento's log
* - Add an end-of-string to each line of the inputkrion2003-08-281-7/+7
| | | | | | | when parsing the input files PR: 56043 Submitted by: maintainer
* Update to 0.5.2.knu2003-08-233-2/+13
|
* Fix build on python2.3perky2003-08-201-1/+6
|
* o Main modificationnork2003-08-192-9/+7
| | | | | | | | | | | | | | | | | | graphics/gd(based on 1.8.4) -> graphics/gd1 graphics/gd2(based on 2.0.15) -> graphics/gd graphics/p5-GD(based on 1.41) -> graphics/p5-GD1 graphics/p5-GD2(based on 2.07) -> graphics/p5-GD japanese/gd -> japanese/gd1 japanese/gd2 -> japanese/gd o Include some feature WITH_XPM(w/, w/o WITHOUT_X11) o Chase this modification o Fix build error [1] PR: ports/54540 Submitted by: Ports Fury Approved by: maintainer (blanket) Reported by: bento via kris [1]
* As announced on May 6, remove the broken p5-bioperl-devel port.kris2003-08-088-686/+0
|
* BROKEN: Checksum mismatchkris2003-08-071-0/+2
|
* Fix python version detection routines to cope with python 2.3'sperky2003-08-021-1/+1
| | | | boolean representation.
* Somehow pkg-plist is removed...maho2003-08-011-0/+128
| | | | Pointy hat to: myself
* a) Update to 1.7.3maho2003-08-013-84/+18
| | | | | | | | | b) Maintainer timeout: This PR is submitted by Thu May 08 07:30:18 PDT 2003 but no reply from the maintainer. PR: 51971 Submitted by: KATO Tsuguru <tkato@prontomail.com> aka Ports Fury
* Add USE_XLIB=yes to compilemaho2003-07-311-0/+1
| | | | Submitted by: kris via bento
* Update to 0.5.1.knu2003-07-292-2/+2
|
* A new port garlic, free molecular viewer and editor, free molecularmaho2003-07-286-0/+399
| | | | | visualization program, protein structure, DNA structure, PDB, molecular rendering, biological macromolecule.
* - Update to version 2.0.5krion2003-07-285-41/+25
| | | | | | PR: 54899 Submitted by: KATO Tsuguru <tkato@prontomail.com> Approved by: fjoe (mentor) (implicit)
* Some clean-up.maho2003-07-261-17/+14
| | | | | | a) ECHO-> ECHO_CMD b) place of WITH_OPTIMIZED_FLAGS seems to be wrong. c) fix errors reported from freshports.org
* Duplicated the `pre-extract:' and `post-build:'maho2003-07-261-9/+0
| | | | | Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov> Pointy hat to: myself
* a) Some corrupts with Makefile and pkg-plist.maho2003-07-252-12/+26
| | | | | | | b) forgot to notice that drop maintainership to ports@ Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov> Pointy hat to: myself
* a) Forgot to update distinfo 52498maho2003-07-255-33/+69
| | | | | | | | | b) added LEGAL. author requests no distribution except from his FTP site c) clean-ups for compiler optimization Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov> Pointy hat to: maho; partially :)
* Update to 0.90maho2003-07-244-309/+328
|
* enhancement, build and install the opengl viewer, moldenogl.maho2003-07-194-74/+64
| | | | | | | | | | update to 3.9, not 3.8, which is newer :) Committed by maintainer timeout: > Sat Apr 5 17:46:57 EST 2003 - edwin - informed maintainer PR: 47177 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov>
* honor CFLAGS and FFLAGSmaho2003-07-192-3/+4
| | | | | PR: 54396 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov>
* Maintainer update of biology/tinker port to version 4.0.maho2003-07-195-20/+42
| | | | | PR: 52498 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov>
* Add semi-colons(;) after declare statements that go in the povray scene fileleeym2003-07-143-7/+168
| | | | | | | | | | | | | so that povchem works with povray-3.5. Maintainer prefer not to depend on ImageMagick since users can use their favorite picture viewer. display isn't the only one choice. Drop maintainership. PR: 54397 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov> Reviewed by: Chen-hsiung Chan <frankch@waru.life.nthu.edu.tw>
* o Change library name from libgd to libgd1.nork2003-07-122-3/+4
| | | | | | | | | o Do not install everything except headers and libraries (to avoid conflicting with graphics/gd2) o Fix dependency on new libgd1(for many ports). PR: ports/54100 Submitted by: Ports Fury
* s/NOPORTSDOCS/NOPORTDOCS/ [1]osa2003-07-112-6/+6
| | | | | | | Use %%PORTDOCS%%%%DOCSDIR%% in pkg-plist. PR: 53911 [1] Approved by: maintainer
* update biology/nab: 4.4 -> 4.5.1daichi2003-07-0812-403/+393
| | | | | PR: 52786 Submitted by: M. L. Dodson <bdodson@scms.utmb.EDU> (maintainer)
* Update to 0.5.0.knu2003-06-263-5/+25
|
* update ports/biology/act to latest release (v2)daichi2003-06-233-988/+1603
| | | | | PR: 49093 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar>
* - update to 1.83erwin2003-06-183-3/+4
| | | | | | | | | - give maintainership to submitter as the old maintainer's address bounces PR: 52054 Submitted by: Philip M. Gollucci <philip@p6m7g8.com> Approved by: maintainer bounces
* Move inclusion of bsd.port.pre.mk later in the file for conditional BROKENkris2003-06-051-5/+5
| | | | | | | tag. Early inclusion caused problems for some ports, so to be safe I'm updating all of them. Pointy hat to: kris
* Assign MAINTAINER to ports@FreeBSD.org.adamw2003-06-051-1/+1
| | | | | PR: ports/52534 Submitted by: Christian Brueffer <chris@unixpages.org>
* Upgrade to 2003.01.21. Appears to only add some more file export/printhoek2003-05-227-40/+49
| | | | | | options. Additional patches were necessary since the fltk port seems to have been upgraded and thus also broken this port (which would been already broken due to the checksum failure).
* Add back the WWW which was inexplicably deleted in a previoushoek2003-05-221-6/+11
| | | | | | revision. Make a few organisational improvements. However, be too lazy to move to pkg-message a note that really shouldn't be necessary for the end user at all.
* - fix build under gcc 3.3petef2003-05-191-1/+8
| | | | | | | - respect CC/CFLAGS PR: 52013 Submitted by: maintainer
* Back out previous commit, the port was fixed a few days ago.kris2003-05-191-7/+1
|
* BROKEN on 5.1: bad C++kris2003-05-182-2/+14
|
* - Update to latest release.mich2003-05-145-62/+3
| | | | | | | | | - Better autoconf/automake so patches no longer needed - Changed dependency. (now wxgtk-devel) PR: 51741 Submitted by: maintainer Approved by: roberto(mentor)
* BROKEN: Broken pkg-plistkris2003-05-071-0/+2
|
* Update to 2003.04.21arved2003-05-058-79/+59
| | | | | PR: 51709 Submitted by: Tony Maher <tonymaher@optushome.com.au>
* - unbreak on 4.x: add dependency on gdkpixbuf, fix Makefiles to compile withpetef2003-05-043-44/+30
| | | | | | | | the correct libraries - add a WITH_OPTIMIZED_CFLAGS knob PR: 51614 Submitted by: maintainer
* Updated to 0.8.6.maho2003-05-035-362/+283
| | | | | Submitted by: M. L. Dodson <bdodson@scms.utmb.EDU> Pkg-plist by: maho
* Update to 20030425 snapshotlioux2003-04-263-6/+6
|
* Remove USE_GNOMENG.marcus2003-04-183-3/+0
|
* Update the biology/tinker Makefile so it builds on -currentedwin2003-03-301-1/+6
| | | | | PR: ports/50371 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov>
* * Fix build with GCC3 (-CURRENT).naddy2003-03-255-24/+89
| | | | | | | * Honor CXX/CXXFLAGS. * Use predefined DOCSDIR and EXAMPLESDIR variables. Approved by: maintainer timeout
generated by cgit (git 2.34.1) at 2024-12-26 21:17:04 +0800