aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Collapse)AuthorAgeFilesLines
* - Chase database/sqlite3 slib bumpmiwi2014-06-281-0/+1
| | | | Approved by: portmgr (myself)
* Fix compilation on 10+ (clang)miwi2014-06-272-2/+10
| | | | | | Fix format of WWW entry in pkg-descr PR: 190798
* - Mark BROKENwen2014-06-261-0/+2
| | | | Approved by: portmgr@(implicit)
* Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mkantoine2014-06-251-1/+2
|
* Use MAKE_CMD instead of GMAKEbapt2014-06-251-2/+2
| | | | With hat: portmgr
* Mark as broken: no distinfo providedbapt2014-06-231-2/+1
|
* Mark as broken: no distinfo providedbapt2014-06-231-3/+1
| | | | With hat: portmgr
* Fix shebang line in Perl and Python scripts.rakuco2014-06-201-13/+6
| | | | | PR: 191146 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
* Mark BROKEN: Fails to configureantoine2014-06-201-0/+2
| | | | | | | | | ===> Configuring for p5-bioperl-run-1.6.1_4 Invalid prerequisite condition '0/processing XML data/Bio::Tools::Run::EMBOSSacd' for XML::Twig at /usr/local/lib/perl5/site_perl/5.16/Module/Build/Base.pm line 1702. *** [do-configure] Error code 25 Reported by: pkg-fallout With hat: portmgr
* biology/blast: Deprecate for removal after 4 September 2014marino2014-06-191-0/+3
| | | | | | | | This unstaged port will be removed for legal reasons. PR: 190626 Submitted by: Muhammad Rahman Approved by: portmgr (implicit)
* Update to 1.2.10.rakuco2014-06-183-35/+23
| | | | | PR: 191129 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
* Update to 3.8.31.rakuco2014-06-185-89/+37
| | | | | PR: 191130 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
* Reset the 99 ports still listed under sylvio@marino2014-06-121-1/+1
| | | | | | | | | | | Sylvio's last commit was 17 months ago, a full 5 months after all of his ports could have been reset per policy. Given the push to complete staging (48 ports are still unstaged, something like 70+ have already been staged by other committers) and given that PRs are automatically assigned but never addressed, it's better just to reset all the ports and PRs so that it's clear to others that these ports are free to maintain. Approved by: portmgr (implicit)
* Remove all the bootstrap files (.bs) from the plists.mat2014-06-102-3/+0
| | | | | | | | | | Starting with perl 5.20, they're not installed any more if empty, and on FreeBSD, they're (always ?) empty. PR: 190681 Submitted by: mat Exp-Run by: antoine Sponsored by: Absolight
* Remove indefinite articles and trailing periods from COMMENT, plusolgeni2014-06-096-6/+6
| | | | | | | minor COMMENT typos and surrounding whitespace fixes. Categories A-C. CR: D196 Approved by: portmgr (bapt)
* Remove all space characters from Makefile assignments.olgeni2014-06-091-1/+1
| | | | | | | No functional changes included. CR: D193 (except math/sedumi) Approved by: portmgr (bapt)
* Stagify, remove BROKEN.vanilla2014-06-072-112/+107
|
* - Update to 6.6.0miwi2014-06-055-834/+1183
| | | | | | | - Stage support PR: 190508 Submitted by: Muhammad Moinur Rahman
* Unbreakantoine2014-06-051-1/+1
|
* - Update to 4.5.2miwi2014-06-042-5/+5
| | | | | | - Pass maintainership to submitter PR: 190564
* Update to 0.5.1 snapshot 20100824bapt2014-06-034-8/+49
| | | | | | | For the story when moved to google code the project released a version 0.5 which was newer than the 0.5.1 from earlier hosting To be consistent named it 0.5.1s20100824 (following what debian did) Switch treeviewx to use unicode version of wx Add a patch from Ubuntu to fix loading trees.
* - add stage supportohauer2014-06-011-5/+1
| | | | - adjust BSDn license
* - add stage supportohauer2014-06-011-12/+6
|
* - add stage supportohauer2014-06-011-22/+16
| | | | | - add OPTION for X11 - bump PORTREVISION
* - add stage supportohauer2014-06-011-6/+3
|
* - add stage supportohauer2014-06-011-16/+4
|
* - add stage supportohauer2014-06-011-21/+8
|
* - I forgot to svn add a new patchdanilo2014-06-011-0/+10
|
* - Update from 1.13.5 to 1.13.7danilo2014-06-013-9/+9
| | | | | - Add libtool to USES - Take maintainership
* Add DOCS and EXAMPLE options to biology/mafftmilki2014-05-311-0/+2
| | | | | | PR: ports/190161 Submitted by: "Reed A. Cartwright" <cartwright@asu.edu> (maintainer) Approved by: swills (maintainer)
* - Update to 1.6.923wen2014-05-305-1532/+1440
| | | | | | | - Add STAGE support PR: 190342 Submitted by: Muhammad Moinur Rahman <5u623l20@gmail.com>
* biology/embassy: specify post-extraction with ${TAR}marino2014-05-291-1/+1
| | | | | | | | | | | | It's possible that EXTRACT_CMD won't be predefined in the near future in order to support distfiles in multiple formats. We know the post- extraction tool needs to be tar, so let's specify it directly. This port needs staging. It doesn't like like a quick job so I'm leaving that to the listed maintainer. Approved by: infrastructure improvements blanket Approved by: portmgr (implicit) (to skip stage check)
* Convert to USES=dos2unixbapt2014-05-261-2/+2
| | | | With hat: portmgr
* Multiple ports: reset maintainerseadler2014-05-262-2/+2
| | | | | | | | | | | | | | Maintainers for these ports have been notified on 5 separate occasions over the course of several months about pending actions required. We really appreciate the time and effort you put in to maintain these ports. If you are still interested in helping to maintain these ports just reply to me or file a PR and I will happily assign the port to you again. Approved by: portmgr (implicit)
* - Update to 4.5.1miwi2014-05-213-8/+13
| | | | | PR: 187975 Submitted by: Ports Fury
* - Update to 7.149amdmi32014-05-213-32/+35
| | | | | | | | - Clarify LICENSE - Stagify PR: 189746 Submitted by: "Reed A. Cartwright" <cartwright@asu.edu> (maintainer)
* Quote ${CC} and similar variables in MAKE_ARGS.tijl2014-05-211-1/+1
| | | | Reported by: Dominic Fandrey <kamikaze@bsdforen.de>
* - update to 1.31jadawin2014-05-162-3/+3
|
* - Update to 5.10.0wen2014-05-133-6/+39
|
* - Update to 5.9.0 [1]wen2014-05-133-40/+263
| | | | | | | | | - Stage support [1] - Add LICENSE [1] - Reset maintainer to port@ PR: 188554 [1] Submitted by: Muhammad Moinur Rahman <5u623l20@gmail.com> [1]
* Replace maintainer's email address with one that seems to workantoine2014-05-114-4/+4
| | | | With hat: portmgr
* Catch a couple of missing convertsion to :tu/:tlbapt2014-05-051-1/+1
| | | | | Submitted by: ak With hat: portmgr
* Support stagebapt2014-05-051-20/+9
|
* Convert all :U to :tu and :L to :tlbapt2014-05-051-3/+3
| | | | | | | | | | | | | | Since FreeBSD 8.4 and FreeBSD 9.1 make(1) do support :tu and :tl as a replacement for :U and :L (which has been marked as deprecated) bmake which is the default on FreeBSD 10+ only support by default :tu/:tl a hack has been added at the time to support :U and :L to ease migration. This hack is now not necessary anymore Note that this makes the ports tree incompatible with make(1) from FreeBSD 8.3 or earlier With hat: portmgr
* biology/seqtools: 4.25 -> 4.26, fix broken distinfo by upgradingpi2014-05-032-4/+5
| | | | | Submitted by: pi (myself) Approved by: jadawin (mentor)
* - Stage support [1]wen2014-05-023-1064/+5
| | | | | | | | | - Pet portlint [1] - Add LICENSE - Convert to PYDISTUTILS_AUTOPLIST PR: 188819 [1] Submitted by: Bartek Rutkowski <ports@robakdesign.com> [1]
* biology/seqtools: 4.24 -> 4.25pi2014-05-022-5/+4
| | | | | | PR: ports/186299 Submitted by: pi (myself) Approved by: jadawin (mentor)
* - Stageswills2014-04-272-1138/+2
| | | | | | | | | | - Drop easy_install - Use auto pkg-plist - Delete pkg-plist PR: ports/188818 Submitted by: Bartek Rutkowski <ports@robakdesign.com> Approved by: portmgr@ (blanket)
* - Update to version 1.13.5miwi2014-04-264-43/+52
| | | | | PR: 188863 Submitted by: ports fury
* - Un-break fetch stage: the name scheme of the source tarballs has changedriggs2014-04-235-12/+34
| | | | | | | | | | | | | - Add LICENSE* - Remove conflict with hunspell: - Rename the 'analyze' binary to 'analyze_t' - put a note in pkg-message.in - Pet portlint PR: ports/187569 Submitted by: Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp> Approved by: thierry (mentor) MFH: 2014Q2
* Remove expired ports:rene2014-04-1812-635/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 2014-04-16 ports-mgmt/pkgsearch: Upstream disappeared 2014-04-17 science/flounder: Unmaintained since 2002 2014-04-17 security/nbaudit: Unmaintained since 2002 2014-04-17 security/saint: Unmaintained since 2002 2014-04-17 graphics/gozer: Unmaintained since 2002 2014-04-17 misc/pdfmap: Unmaintained since 2002 2014-04-17 devel/showgrammar: Unmaintained since 2002 2014-04-17 biology/libgenome: Unmaintained since 2002 2014-04-17 deskutils/narval: Unmaintained since 2002 2014-04-17 devel/fampp: Unmaintained since 2002 2014-04-17 net-p2p/py-fngrab: Unmaintained since 2002 2014-04-17 misc/wmfirew: Unmaintained since 2002 2014-04-17 x11-wm/e16utils: Unmaintained since 2002 2014-04-17 misc/salias: Unmaintained since 2002 2014-04-17 print/latex2slides: Unmaintained since 2002 2014-04-17 lang/sxm: Unmaintained since 2002 2014-04-17 textproc/pybook: Unmaintained since 2002 2014-04-17 mail/mailcrypt: Unmaintained since 2002 2014-04-17 japanese/elvis: Unmaintained since 2002 2014-04-17 devel/prototype: Unmaintained since 2002 2014-04-17 print/wprint: Unmaintained since 2002 2014-04-17 science/euler: Unmaintained since 2002 2014-04-17 multimedia/gopchop: Unmaintained since 2002 2014-04-17 science/gdis: Unmaintained since 2002 2014-04-17 net/googolplex: Unmaintained since 2002 2014-04-17 lang/logo: Unmaintained since 2002 2014-04-17 textproc/roap: Unmaintained since 2002 2014-04-17 x11-wm/afterstep-i18n: Unmaintained since 2002 2014-04-17 games/yamsweeper: Unmaintained since 2002 2014-04-17 net-mgmt/echolot: Unmaintained since 2002 2014-04-17 security/pam_smb: Unmaintained since 2002 2014-04-18 devel/lua-redis-parser: Broken for more than 6 months 2014-04-18 biology/finchtv: Broken for more than 6 months 2014-04-18 net-im/ari-yahoo: Broken for more than 1 year (http://www.icculus.org/ari-yahoo/)
* The FreeBSD x11@ and graphics team proudly presentszeising2014-04-174-3/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | a zeising, kwm production, with help from dumbbell, bdrewery: NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE This update switches over to use the new xorg stack by default on FreeBSD 9 and 10 stable, on osversions where vt(9) is available. It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in /etc/make.conf . FreeBSD 8-STABLE and released versions of FreeBSD still use the old version. A package repository with binary packages for new xorg will be available soon. This patch also contains updates of libxcb and related ports, pixman, as well as some drivers and utilities. Bump portrevisions for xf86-* ports, as well as virtualbox-ose-additions due to xserver version change. Apart from these updates, the way shared libraries are handled has been changed for all xorg ports, as well as libxml2 and freetype, which means ltverhack is gone and as a consequence shared libraries have been bumped. The plan is that this change will make library bumps less likely in the future. All affected ports have had their portrevisions bumped as a consequence of this. Fix some issues where WITH_NEW_XORG weren't detected properly on CURRENT. Update instructions, hardware support, and more notes can be found on https://wiki.freebsd.org/Graphics Thanks to: all testers, bdrewery and the FreeBSD x11@ team exp-run by: bdrewery [1] PR: ports/187602 [1] Approved by: portmgr (bdrewery), core (jhb)
* Remove expired ports:rene2014-04-1313-304/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 2014-04-12 net/pvm++: Unmaintained since 2001 2014-04-12 devel/ixlib: Unmaintained since 2001 2014-04-12 mail/althea: Unmaintained since 2001 2014-04-12 graphics/claraocr: Unmaintained since 2001 2014-04-12 graphics/qvplay: Unmaintained since 2001 2014-04-12 print/guitartex: Unmaintained since 2001 2014-04-12 print/pnm2ppa: Unmaintained since 2001 2014-04-12 graphics/opendis: Unmaintained since 2001 2014-04-12 net/gnome-mud: Unmaintained since 2001 2014-04-12 graphics/maverik: Unmaintained since 2001 2014-04-12 biology/rasmol: Unmaintained since 2001 2014-04-12 mail/mail2procmailrc: Unmaintained since 2001 2014-04-12 science/felt: Unmaintained since 2001 2014-04-12 textproc/pardiff: Unmaintained since 2001 2014-04-12 lang/klone: Unmaintained since 2001 2014-04-12 net/rmsg: Unmaintained since 2001 2014-04-12 net/sharity-light: Unmaintained since 2001 2014-04-12 biology/genpak: Unmaintained since 2001 2014-04-12 net/forg: Unmaintained since 2001 2014-04-12 misc/txt2regex: Unmaintained since 2001 2014-04-12 textproc/ipdf: Unmaintained since 2001 2014-04-12 graphics/plotmtv: Unmaintained since 2001 2014-04-12 devel/happydoc: Unmaintained since 2001 2014-04-12 print/cpp2latex: Unmaintained since 2001 2014-04-12 graphics/svg2swf: Unmaintained since 2001 2014-04-12 devel/flick: Unmaintained since 2001 2014-04-12 mail/smail: Unmaintained since 2001 2014-04-12 net/net-http: Unmaintained since 2001 2014-04-12 security/cfv: Unmaintained since 2001 2014-04-12 graphics/camediaplay: Unmaintained since 2001 2014-04-12 math/umatrix: Unmaintained since 2001
* - Back to the heap, I don't use this port anymoreculot2014-04-121-1/+1
|
* Mark as broken unstaged perl portsbapt2014-04-092-0/+2
| | | | With hat: portmgr
* Support stagebapt2014-04-072-32/+16
|
* - Update to 0.5.2wen2014-04-062-4/+5
| | | | - Add LICENSE
* - Update to 2.3.6wen2014-04-062-4/+5
| | | | - Reset maintainer to ports@
* - Update to 4.8wen2014-04-053-8/+8
| | | | - Reset maintainer to ports@
* Unbreakantoine2014-03-281-1/+1
| | | | Reported by: pkg-fallout
* - Fix PLISTsunpoet2014-03-262-0/+3
| | | | | | - Bump PORTREVISION for package change Reported by: swills
* - Update to 2.0sunpoet2014-03-262-3/+3
| | | | Changes: http://search.cpan.org/dist/Bio-GFF3/Changes
* Does not build with wx 3.0bapt2014-03-241-3/+3
| | | | | Remove the contrib component which is not required Note that is does not build with the unicode version of wx 2.8 as well
* Add staging supportpawel2014-03-241-12/+5
|
* - Add staging supportpawel2014-03-241-19/+9
| | | | - Unmute install commands
* - Add staging supportpawel2014-03-242-31/+31
| | | | - Switch to PORTDOCS
* - Add staging supportpawel2014-03-241-17/+13
| | | | - Strip libraries
* Add staging supportpawel2014-03-242-34/+60
|
* - Add staging supportpawel2014-03-241-10/+8
| | | | - Strip library
* Add staging supportpawel2014-03-241-15/+8
|
* Add staging supportpawel2014-03-241-8/+5
|
* Deprecate: Broken for more than 6 monthsantoine2014-03-191-0/+2
|
* Support stagingehaupt2014-03-141-9/+3
|
* Support stagingehaupt2014-03-141-2/+2
|
* - Convert USE_GMAKE to USESmiwi2014-03-1310-11/+10
|
* Deprecate a few old unmaintained portsantoine2014-03-121-0/+2
|
* Update the default version of GCC used in the Ports Collection fromgerald2014-03-1112-10/+12
| | | | | | | | | | | GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk. Part II, Bump PORTREVISIONs. PR: 182136 Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports) Tested by: bdrewery (two -exp runs)
* biology/ssaha: undeprecate, this port fetches and builds fine.rene2014-03-091-3/+0
| | | | Submitted by: Kurt Jaeger via private mail.
* Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained ↵antoine2014-03-092-0/+4
| | | | since more than 12 years)
* Unbreakantoine2014-03-091-1/+0
|
* Convert b* to USES=zipbapt2014-03-075-10/+5
|
* Convert to dos2unixbapt2014-03-071-1/+1
|
* Update to version 1.13.1.danfe2014-03-073-4/+4
|
* biology/fasta3: Checked new distfile and regenerated distinfo to unbreakmarino2014-03-022-3/+8
| | | | | | | | | | | Fasta3 distfile was significantly changed. This should have been released as a new version (e.g. 36.3.6e), so it's not clear why the distfile was rerolled. There are significant changes to makefiles, conf files and even a few .c and .h files. They all look like legitimate updates to me though. Set DIST_SUBDIR since this port is now known for rerolling, then regenerate distinfo. Also add Fasta license and bump revision.
* - Update to 35miwi2014-02-274-27/+50
| | | | PR: 184245
* - Update to 5.0.7miwi2014-02-272-24/+21
| | | | | PR: 185942 Submitted by: ports fury
* - Stage supportmiwi2014-02-272-21/+18
| | | | | | | - Update to version 4.4.3 PR: 187041 Submitted by: ports fury
* - Repocopy print/py-reportlab to print/py-reportlab1tota2014-02-251-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to preserve version 1.x and to update to 3.0 print/py-reportlab: - Update print/py-reportlab to 3.0 based on print/py-reportlab2 - Support STAGEDIR - Use PYDISTUTILS_AUTOPLIST * Remove pkg-plist, accordingly - Set CONFLICTS - Add PORTSCOUT - Replace tab with a single space after WWW: in pkg-descr print/py-reportlab1: - Support STAGEDIR - Add PKGNAMESUFFIX not to duplicate ports with the same name - Set CONFLICTS - Use PYDISTUTILS_AUTOPLIST * Remove pkg-plist, accordingly - Make use of PORTDOCS - Set OPTIONS_DEFINE explicitly - Fix include statement - Make docs unconditional to stage - Replace tab with a single space after WWW: in pkg-descr print/py-reportlab2: - Update CONFLICTS - Set PORTSCOUT dependent ports: - Switch dependency from print/py-reportlab to print/py-reportlab1 * biology/py-biopython * deskutils/gourmet * deskutils/griffith * games/pythonsudoku * misc/pdfmap * print/py-trml2pdf * www/py-satchmo PR: ports/186970 Submitted by: tota (myself) Approved by: Muhammad Moinur Rahman (maintainer)
* Remove trailing whitespaces from category biologyehaupt2014-02-2110-10/+10
|
* Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most casestijl2014-02-173-15/+13
| | | | | | | | | | | USE_GCC=yes has been omitted though. Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk. Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,... Exp-run: bdrewery Approved by: portmgr (bdrewery)
* Support stagingehaupt2014-02-161-2/+1
|
* Support stagingehaupt2014-02-161-14/+7
|
* - Support stagingehaupt2014-02-161-9/+7
| | | | - Use shebangfix
* Support stagingehaupt2014-02-161-8/+3
|
* Support stagingehaupt2014-02-161-10/+6
|
* Fix old makeplist bug.mat2014-02-122-1/+2
| | | | | Pointy hat to: people who blindly use makeplist Sponsored by: Absolight
* According to the Porter's Handbook (5.12.2.3.) default options must be added toehaupt2014-02-1010-0/+20
| | | | | | | | | | | OPTIONS_DEFINE. This policy has been implemented only recently that's why we have many ports violating this policy. This patch adds the default options specified in the Porter's Handbook to OPTIONS_DEFINE where they are being used. Ports maintained by gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded. Approved by: portmgr (bapt)
* - Stage supportmiwi2014-02-102-22/+36
|
* Update WWWehaupt2014-02-091-1/+1
|
* Deprecate ports unmaintained for which distillator is not able to find ↵bapt2014-02-081-0/+3
| | | | | | public distfiles Reported by: distilator
* biology/libgenome: Fix build on dragonflymarino2014-02-061-0/+10
|
* biology/tRNAscan-SE: Fix hardcoded perl pathmarino2014-02-061-0/+11
|
* biology/wise: Add dragonfly supportmarino2014-02-061-0/+13
|
* Drop maintainership on those.mat2014-02-061-1/+1
| | | | Sponsored by: Absolight
* Drop maintainership BOINC ports, old machine running them gave up.rene2014-02-051-1/+1
|
* - Stage supportmiwi2014-01-312-33/+31
|
* - Stage supportmiwi2014-01-311-1/+0
|
* - Stage supportmiwi2014-01-311-1/+0
|
* - Convert to PYDISTUTILS_AUTOPLISTmiwi2014-01-312-25/+3
| | | | | - Stage support - Bump PORTREV
* - Convert to PYDISTUTILS_AUTOPLISTmiwi2014-01-312-11/+3
| | | | | - Stage support - Bump PORTREV
* Unbreak the fetch: one of the documentation PDF files was rerolled.danfe2014-01-302-4/+2
|
* - Mark BROKEN because it does not fetchdecke2014-01-301-0/+2
|
* - fix pkg-plistaz2014-01-302-4/+3
| | | | - add LICENSE
* - Stagify; cleanup Makefile and reorder the knobs a bitdanfe2014-01-291-28/+21
| | | | - Drop the case for long unsupported alpha architecture
* - Fix build on -currentmiwi2014-01-266-26/+60
| | | | | | | | | | - Update MASTER_SITES and WWW: line - Support CXX/CXXFLAGS properly - Support PLIST_FILES - Stage support PR: 184852 Submitted by: Ports Fury
* - Update to 1.9sunpoet2014-01-233-8/+7
| | | | | | - Sort PLIST Changes: http://search.cpan.org/dist/Bio-GFF3/Changes
* Fix properties on pkg-plistbapt2014-01-224-4/+0
|
* Support stagebapt2014-01-211-5/+4
|
* Support stagebapt2014-01-211-6/+5
|
* Support stagebapt2014-01-212-3/+1
|
* Support stagebapt2014-01-212-13/+26
| | | | Conver USE_GMAKE
* Stage supportantoine2014-01-181-15/+7
|
* - Update to version 1.13.0 and improve FreeBSD support; it also buildsdanfe2014-01-179-140/+378
| | | | | | | | | | pretty cleanly with GCC v4.2, v4.6, and Clang (modulo a few warnings) - Sadly, do not use PORTDOCS: since DOCSDIR is set to be inside DATADIR, and will get appended to PLIST after @dirrm %%DATADIR%%, which upsets sanity checking tools; instead, list the docs explicitly in DISTFILES and add them to pkg-plist (guarded by %%PORTDOCS%%) Tested on: i386 (only)
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
|
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
|
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
|
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-7/+3
|
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
|
* Support stagebapt2014-01-161-19/+10
| | | | | Reduce over inclusions of bsd.port.mk Use BROKEN_${ARCH}
* Python cleanup:rene2014-01-143-3/+3
| | | | | | | - USE_PYTHON* = 2.X -> USE_PYTHON* = 2 - USE_PYTHON* = 2.X+ -> USE_PYTHON* = yes Reviewed by: python (mva, rm) Approved by: portmgr-lurkers (mat)
* - Fix build with clangriggs2014-01-132-13/+8
| | | | | | | | - Stage support PR: ports/185655 Submitted by: Tassilo Philipp <tphilipp@potion-studios.com> (maintainer) Approved by: thierry (mentor)
* - add stage supportaz2014-01-062-6/+4
| | | | Approved by: portmgr (blanket infrastructure)
* - add stage supportaz2014-01-063-4/+2
| | | | Approved by: portmgr (blanket infrastructure)
* - support stageaz2014-01-056-135/+143
|
* Mark as broken: Invalid checksum, seems like the software was rerolledbapt2014-01-041-0/+2
|
* Convert biology to MDOCS and MEXAMPLESadamw2014-01-0314-20/+46
|
* - rename AL2 to APACHE20 in Mk/bsd.licenses.db.mkohauer2013-12-311-1/+1
| | | | | | | | | | | | | | - svn move Templates/Licenses/AL2 Templates/Licenses/APACHE20 - add APACHE10 and APACHE11 to Mk/bsd.licenses.db.mk - add entry in UPDATING - bulk change all ports AL2 => APACHE20 - math/openfst/pkg-plist: remove share/licenses/openfst-1.3.4 PR: ports/184785 Submitted by: ohauer Reviewed by: tabthorpe Approved by: portmgr (tabthorpe@)
* Stage supportantoine2013-12-311-3/+2
|
* Stage supportantoine2013-12-311-13/+4
|
* - USES=fortran gmake.tijl2013-12-292-16/+15
| | | | | | | - Add dependency on xproto. - Fix build with new CFLAGS. - Staging. - New WWW.
* The hmmer binary was renamed upstream to indicate that it is now anrene2013-12-292-6/+6
| | | | archive file, adjust the port so that fetch and extract work again.
* biology/seqtools: update to 4.24wg2013-12-252-3/+3
| | | | | PR: ports/185162 Submitted by: maintainer
* Several fixes:rene2013-12-242-10/+14
| | | | | | | | | | | | | - install files as the BOINC user/group, this ensures that work units can be downloaded and sent - try to remove ~boinc/projects if empty - do not specify -o and -g parameters to ${INSTALL}, this ensures the package can be built as user - only extract the hmmer binary from the hmmer distribution file, this ensures correct permissions when modifying app_info.xml as user - Bump PORTREVISION Reviewed by: bapt
* - Fix build with clang/libc++.wen2013-12-202-3/+12
| | | | | | | - Support staging. PR: 184974 Submitted by: tijl@
* - Respect CC/CFLAGSpawel2013-12-202-6/+43
| | | | | PR: ports/184857 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* - biology/tinker: USES=fortran, staging.tijl2013-12-192-22/+20
| | | | | - Add CONFLICTS_INSTALL between hunspell and tinker. Both install bin/analyze.
* USES=fortran, staging.tijl2013-12-191-9/+5
|
* USES=fortran, staging, miscellaneous cleanups.tijl2013-12-192-119/+26
|
* Version 2013.12.12, USES=fortran, staging.tijl2013-12-181-30/+17
|
* USES=fortran, fix LDFLAGS, staging.tijl2013-12-181-11/+10
|
* Fix the build with more standards-compliant compilers such as GCC 4.7. [1]gerald2013-12-134-1/+63
| | | | | | | | On the way replace USE_GMAKE by USES=gmake. PR: 184566 [1], 182136 Submitted by: Christoph Moench-Tegeder <cmt@burggraben.net> [1] Approved by: maintainer (Jason Bacon <jwbacon@tds.net>) [1]
* In preparation for making libtool generate libraries with a sane name, fix allbapt2013-12-1112-19/+19
| | | | LIB_DEPENDS in biology
* Support stagebapt2013-12-111-8/+5
| | | | | USE_GMAKE -> USES=gmake use USES=readline:port
* Support stagebapt2013-12-111-8/+5
| | | | | USE_GMAKE -> USES=gmake Respect CC
* Support stagebapt2013-12-111-3/+3
| | | | | | Convert USE_GMAKE to USES=gmake Add dependency on perl which the port need and was getting by chance bump portrevision, dependencies has changed
* Respect PORT_OPTIONS:MDOCSadamw2013-12-092-8/+8
| | | | | Clean up COMMENT USES=gmake
* - Fix build on headwen2013-12-011-0/+1
|
* - Update to 1.28jadawin2013-11-283-62/+60
| | | | Sponsored by: OBS
* - Fix build with clangjadawin2013-11-285-34/+44
| | | | | | | - Support STAGEDIR PR: ports/184242 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* - Fix buildjadawin2013-11-272-10/+42
| | | | | | | - Support STAGEDIR PR: ports/184238 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* biology/lamarc: fix build on currentwg2013-11-262-4/+10
| | | | | PR: ports/184219 Submitted by: KATO Tsuguru <tkato432 yahoo.com>
* Convert to USES=dos2unixbapt2013-11-181-6/+5
| | | | | | While here stagify some of the ports Modernize LIB_DEPENDS Extract zip with bsdtar when possible
* biology/seqtools: update to 4.23wg2013-11-152-4/+4
| | | | | PR: ports/183960 Submitted by: maintainer
* Add stage supportbapt2013-11-131-18/+8
| | | | | Use bsdtar to extract the distfile Rip out USE_GMAKE
* Stage supportbapt2013-11-131-11/+6
| | | | drop USE_GMAKE
* biology/seqtools: Tools for visualising sequence alignmentswg2013-11-108-60/+61
| | | | | | | | | | | | | | | | Blixem is an interactive browser of pairwise alignments that have been stacked up in a "master-slave" multiple alignment; it is not a 'true' multiple alignment but a 'one-to-many' alignment. Belvu is a multiple sequence alignment viewer and phylogenetic tool. Dotter is a graphical dot-matrix program for detailed comparison of two sequences. WWW: http://www.sanger.ac.uk/resources/software/seqtools/ PR: ports/183801 Submitted by: Kurt Jaeger <fbsd-ports opsec.eu>
* . give maintainership to the submitter;bsam2013-11-071-3/+3
| | | | | | | | | . add one month to DEPRACATION_DATE; while here: strip the indefinite article from COMMENT. PR: ports/183742 Submitted by: Kurt Jaeger <fbsd-ports@opsec.eu> (assigned maintainer)
* - Update to 1.8sunpoet2013-11-032-3/+3
| | | | Changes: http://search.cpan.org/dist/Bio-GFF3/Changes
* - Install official UGENE documentation (PDF)danfe2013-11-013-3/+21
| | | | - Utilize DIST_SUBDIR as now it's more than one distfile
* - Update to version 1.12.3danfe2013-10-318-79/+325
| | | | | | | | | - Conditionalize dependency on `devel/libexecinfo' - Try to detect SSE2 support - Convert to USES=qmake and stafigy - Improve grammar in port description while here Approved by: maintainer (implicit)
* Update to version 36.3.6dpawel2013-10-305-93/+114
| | | | | PR: ports/181883 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* Update to libmpc version 1.0.1 which brings the following fixes:gerald2013-10-2612-5/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Switched to automake 1.11.6, see CVE-2012-3386. - #14669: Fixed extraction of CC from gmp.h. - Fixed case of intermediate zero real or imaginary part in mpc_fma, found by hydra with GMP_CHECK_RANDOMIZE=1346362345. This is on top of the following changes from version 1.0 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no invariant sections) for the documentation. - 100% of all lines are covered by tests - Renamed functions . mpc_mul_2exp to mpc_mul_2ui . mpc_div_2exp to mpc_div_2ui - 0^0, which returned (NaN,NaN) previously, now returns (1,+0). - Removed compatibility with K&R compilers, which was untestable due to lack of such compilers. - New functions . mpc_log10 . mpc_mul_2si, mpc_div_2si - Speed-ups . mpc_fma - Bug fixes . mpc_div and mpc_norm now return a value indicating the effective rounding direction, as the other functions. . mpc_mul, mpc_sqr and mpc_norm now return correct results even if there are over- or underflows during the computation. . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has infinite part and equals output variable is corrected. . mpc_fr_sub: Wrong return value for imaginary part is corrected. Convert to the new LIB_DEPENDS standard and remove hard-coded .so versions from a couple of dependent ports. Bump PORTREVISIONS of all dependent ports. PR: 183141 Approved by: portmgr (bdrewery)
* - Remove manual creation and removal of share/applications, as it's now in ↵amdmi32013-10-223-4/+0
| | | | | | the mtree (categories starting with [bce]) Approved by: portmgr (bdrewery)
* Deprecated some ports broken for more than 6 monthbapt2013-10-181-0/+3
|
* - Switch to build with lang/ruby19tabthorpe2013-10-111-1/+1
| | | | | | - No PORTREVISION bump, option is off by default With hat: portmgr
* Update BioCocoa to the latest release.theraven2013-10-093-75/+68
| | | | Approved by: bapt (mentor)
* - Update to 0.5.1wen2013-10-043-4/+4
|
* - Update to 1.7sunpoet2013-10-043-12/+12
| | | | | | - Support STAGEDIR Changes: http://search.cpan.org/dist/Bio-GFF3/Changes
* biology/avida: add <unistd.h>, <typoinfo> for modern compilersmarino2013-10-022-0/+20
|
* - Remove NO_STAGE as these have been tested to be safebdrewery2013-09-252-2/+0
| | | | With hat: portmgr
* Use value of BOINC_CLIENT_HOME in pkg-messagerene2013-09-242-2/+3
|
* - Add stagedir supportrene2013-09-241-12/+17
| | | | - Rewrap lines
* Respect 'make check-sanity' for this port too.rene2013-09-241-2/+1
|
* Fix NO_STAGE attributionbapt2013-09-231-1/+1
|
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵bapt2013-09-2094-114/+117
| | | | biology)
* Mark BROKEN, fails checksumbdrewery2013-09-181-0/+2
| | | | With hat: portmgr
* Add an explicit dependency on pkgconfantoine2013-09-081-1/+1
| | | | Approved by: portmgr (bapt)
* - Use single space after WWW:sunpoet2013-09-081-1/+1
|
* - convert to the new perl5 frameworkaz2013-09-074-4/+7
| | | | Approved by: portmgr (bapt@, blanket)
* - Make ports use the libc provided iconv implementation on 10-CURRENTmadpilot2013-09-053-3/+5
| | | | | | | | | | after r254273 - Fix a bunch of ports to properly work after this - Mark converters/libiconv as IGNORE for systems with iconv in libc Reviewed by: bapt Approved by: portmgr (bapt) Discussed with: bapt, bsam (who both contributed ideas and code)
* - Add WWWsunpoet2013-08-301-2/+1
| | | | | - Use single space after WWW: - Remove Author line
* - Disconnect ports removed in r325546bdrewery2013-08-291-1/+0
|
* Update to latest GNUstep core libraries.theraven2013-08-298-412/+85
| | | | | | | | | | | Update dependent packages with more recent releases. Remove old and bit-rotted ones. Switch to using clang 3.3 and libobjc2 1.7 by default, so modern Objective-C features work out of the box and remove a lot of configurable options for sub-optimal (and, often, unsupported / deprecated upstream) configurations. Take maintainership of GNUstep-related ports. Several of the ports left in have scary warnings which mean that they are likely broken in lots of cases. Future commits will fix them. Approved by: bapt
* Make sure to respect CC and CXX, this fixes the build on head without gccbapt2013-08-281-2/+2
|
* Update math/gsl to 1.16 and adjust some dependent portsbf2013-08-271-2/+2
|
* - Update to 2.3.5wen2013-08-204-442/+9
| | | | | | - Add LICENSE - Remove pkg-message since license changed upstream - Do not install test files as example
* biology/tinker: Regenerate distinfo to unbreak fetchmarino2013-08-182-2/+3
| | | | | | | | | Apparently the distfile was rerolled. The sizes of the file are only a few bytes apart. Since the master site never changed, it's reasonable just to regenerate the distinfo and bump the PORTREVISION. PR: 180664 Approved by: bapt/culot (mentors, implicit)
* Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.gerald2013-08-181-1/+1
| | | | | | | | | | | | | | Right now this is a noop in the former case and a noop in the latter case unless lang/gcc44 has been installed explicitly. This puts a bit more emphasis on standardizing on a canonical version "current" GCC and makes it easier to update that canonical version by changing the default in Mk/bsd.gcc.mk and updating the lang/gcc port. That is, USE_GCC=yes means "use a decent/modern version of GCC" without having to worry about details. Approved by: portmgr (bdrewery)
* - Remove MAKE_JOBS_SAFE variableak2013-08-1510-10/+0
| | | | Approved by: portmgr (bdrewery)
* biology/libgenome: Mark jobs unsafemarino2013-08-141-0/+2
| | | | Approved by: bapt/culot (mentors, implicit)
* - update libdg to 2.1.0dinoex2013-08-092-5/+5
|
* - Pet portlint: remove blank line among *_DEPENDSsunpoet2013-08-061-1/+0
|
* - Convert to new perl frameworkaz2013-08-062-2/+4
| | | | | | - Trim Makefile header Approved by: wen@ (maintainer)
* - Convert to new perl frameworkmat2013-08-032-2/+2
| | | | - Remove MAKE_JOBS_SAFE=yes, it's the default.
* - Convert to new perl frameworkaz2013-08-032-2/+2
| | | | - Trim Makefile header
* - Convert to new perl frameworkmat2013-08-038-24/+19
| | | | | - Trim Makefile header - Remove MAKE_JOBS_SAFE=yes, it's the default.
* - Update to 1.6jadawin2013-08-012-4/+5
| | | | | - Convert to new perl5 framework - Changelog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.6/Changes
* KDE3 and QT3 expired on 2013-07-01, remove these ports.rene2013-07-276-187/+0
| | | | | | | | | | | | | | | | Unfortunately, this also affects some ports using QT3 as a GUI toolkit. Changes to infrastructure files: - bsd.kde.mk : obsolete, remove - bsd.qt.mk : note that a CONFLICTS_BUILD line can probably go after a while - CHANGES : document the removals from bsd.port.mk - KNOBS : remove KDE and QT (KDE4 and QT4 should be used instead) - MOVED : add the removed ports PR: ports/180745 Submitted by: rene Approved by: portmgr (bapt) Exp-run by: bapt
* - Update to 3.0wen2013-07-203-32/+46
| | | | | - Convert to optionsNG - Drop maintainership
* - Update to 0.56wen2013-07-203-3/+13
|
* - Update to 2.37wen2013-07-203-3/+7
| | | | Changes: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.37/Changes
* - Update to 36.3.6wen2013-07-195-23/+30
| | | | - Drop maintainership
* - Update to 6.2.06miwi2013-07-154-13/+23
| | | | | PR: 180518 Submitted by: Ports Fury
* - Update to 4.4.2miwi2013-07-152-3/+3
| | | | | PR: 180515 Submitted by: Ports Fury
* - Update to 7.31.0sunpoet2013-07-121-0/+1
| | | | | | | | | | | | | | | | | | | | | | | - Bump PORTREVISION for ftp/curl shlib change - Add TEST_DEPENDS - Convert to new options framework - Adjust options: - Add COOKIES - Add CYASSL, NSS, POLARSSL, THREADED_RESOLVER, TLS_SRP [1] - Add GSSAPI and SPNEGO [2] - Remove KERBEROS4 - Rename LIBIDN to IDN - Remove TRACKMEMORY [1] - Sort option handler - Add SLAVEDIRS: ftp/curl-hiphop - Cosmetic change - Cleanup Makefile header - While I'm here, fix typo (PORTREVSION) in x11-wm/ede/Makefile Changes: http://curl.haxx.se/changes.html PR: ports/172325 (-exp run), ports/177369 (based on) [1] Submitted by: Hirohisa Yamaguchi <umq@ueo.co.jp> [1], hrs (via email) [2] Exp run by: miwi
* Convert from USE_MOTIF to USES=motifbapt2013-07-101-6/+2
|
* Convert from USE_MOTIF to USES=motifbapt2013-07-103-7/+4
| | | | | | | While here: - trim headers - Remove indefinite article from comment - convert USE_GMAKE to USES=gmake
* Fix some PORT_OPTIONS conversionsantoine2013-07-011-1/+1
|
* Convert to USES=imakebapt2013-06-291-10/+4
| | | | Trim headers
* Fix some screw ups introduced in r319847.rakuco2013-06-252-4/+4
| | | | | | | | | | I'm not sure if the submitter of ports/179224 didn't even test his patch or if the distfile was re-rolled in a bizarre way. Anyway, fix distfile and also cd into the correct directories to actually build the port. PR: ports/179790
* Remove stale (since r321246) pkg-plist file.bsam2013-06-201-39/+0
|
* . introdice optionsNG to the port;bsam2013-06-202-98/+26
| | | | | | | | | | | . remove shlib ABI version from LIB_DEPENDS; . introduce EXAMPLE option (do not install examples to DOCSDIR); . bump PORTREVISION; . get use of PLIST_FILES, PORTDOCS and PORTEXAMPLES at Makefile; . get rid of pkg-plist; . trim Makefile heades; . remove acticle from COMMENT; . simplify install commands.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-18/+14
| | | | | | | | . introduce EXAMPLES option (do not install examples to DOCSDIR); . bump PORTREVISION; . make use of PLIST_FILES, PORTDOCS and PORTEXAMPLES at Makefile; . get rid of pkg-plist; . simpify install commands.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-42/+17
| | | | | | | | | | | . mute mdir commands and unmute install commands; . do not use mkdir for parent directories (mkdir implies "-p"); . introduce EXAMPLE option (do not install examples to DOCSDIR); . bump PORTREVISION; . make use of PLIST_FILES, PORTDOCS and PORTEXAMPLES at Makefile; . get rid of pkg-plist; . use standard DOCSDIR and EXAMPLESDIR (instead of a PREFIX/foo/bar path); . trim Makefile headers.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-34/+11
| | | | | | | | . pet portlint: use {} instaed of () at variable; . use PLIST_FILES, PORTDATA and PORTDOCS at Makefile; . get rid of pkg-plist; . remove article from COMMENT; . trim Makefile headers.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-203-13/+12
| | | | | | | | | . mute mkdir; . use PLIST_FILES and PORTDOCS at Makefile; . remove pkg-plist; . trim Makefile headers; . remove article from COMMENT; . pet portlint -- use opne space after WWW: at pkg-descr.
* Use optionsNG for DOCS.bsam2013-06-201-2/+2
|
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-12/+9
| | | | | | . use PORTDOCS at Makefile (thus simplify pkg-plist); . use plain install instead of a .for loop; . trim Makefile headers.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-13/+11
| | | | | | . use PLIST_FILES, PORTDATA and PORTDOCS; . use standard DATADIR and DOCSDIR (rather PREFIX/foo/bar); . remove pkg-plist.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-201-10/+11
| | | | . trim Makefile headers.
* . add license (GPLv2);bsam2013-06-201-8/+9
| | | | | | . bump PORTREVISION; . NOPORTDOCS -> PORT_OPTIONS:MDOCS; . trim Makefile headers.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-12/+12
| | | | | | | | . use f instead of file for a variable (portlint warns against file); . do not mute install commands; . remove article from COMMENT; . trim Makefile headers; . pet portlint: use one space after WWW: at pkg-descr.
* . remove pkg-plist (along with the previous commit).bsam2013-06-201-17/+0
|
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-201-4/+14
| | | | | | | . use PORTDOCS and PORTDATA at makefile; . mute mkdirs; . add padding to PKGMESSAGE; . remove article from COMMENT.
* . NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;bsam2013-06-202-20/+8
| | | | | . use PORTEXAMPLES at Makefile; . trim Makefile headers.
* . add license (GPLv2);bsam2013-06-201-6/+5
| | | | | | . bump PORTREVISION; . trim article from COMMENT; . trim Makefile headers.
* . pet portlint: add USE_LDCONFIG;bsam2013-06-191-0/+2
| | | | . bump PORTREVISION.
* . trim Makefile headers;bsam2013-06-191-6/+2
| | | | . remove the indefinite article from COMMENT.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-192-5/+8
| | | | | . use PLIST_FILES and PORTDOCS; . remove pkg-plist (4 lines).
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-192-11/+8
| | | | | . remove LICENSE_FILE for a standard license (GPLv2); . trim Makefile headers.
* Index: Makefilebsam2013-06-191-27/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | =================================================================== --- Makefile (revision 321238) +++ Makefile (working copy) @@ -1,9 +1,5 @@ -# New ports collection makefile for: seqio -# Date created: 17 August 2001 -# Whom: Tony Maher -# +# Created by: Tony Maher # $FreeBSD$ -# PORTNAME= seqio PORTVERSION= 1.2.2 @@ -13,38 +9,32 @@ DISTNAME= ${PORTNAME} MAINTAINER= ports@FreeBSD.org -COMMENT= A set of C functions which can read/write biological sequence files +COMMENT= Set of C functions which can read/write biological sequence files WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} EXAMPLES= example1.c example2.c example3.c example4.c seqio.c \ seqio.h Makefile PROGRAMS= fmtseq grepseq idxseq typeseq wcseq +PLIST_FILES+= ${PROGRAMS:S,^,bin/,} +PORTEXAMPLES= * +PORTDOCS= * +OPTIONS_DEFINE= DOCS EXAMPLES + +.include <bsd.port.options.mk> + do-install: - cd ${WRKSRC}; \ - for file in ${PROGRAMS}; do \ - ${INSTALL_PROGRAM} $$file ${PREFIX}/bin; \ - done -.if !defined(NOPORTEXAMPLES) - ${MKDIR} ${EXAMPLESDIR} - cd ${WRKSRC}; \ - for file in ${EXAMPLES}; do \ - ${INSTALL_DATA} $$file ${EXAMPLESDIR}; \ - done + ${INSTALL_PROGRAM} ${PROGRAMS:S,^,${WRKSRC}/,} ${PREFIX}/bin +.if ${PORT_OPTIONS:MEXAMPLES} + @${MKDIR} ${EXAMPLESDIR} + ${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/,} ${EXAMPLESDIR} .endif -.if !defined(NOPORTDOCS) - ${MKDIR} ${DOCSDIR} - ${MKDIR} ${DOCSDIR}/html +.if ${PORT_OPTIONS:MDOCS} + @${MKDIR} ${DOCSDIR}/html ${INSTALL_DATA} ${WRKSRC}/bioseq.txt ${DOCSDIR} - cd ${WRKSRC}/doc; \ - for file in *.doc; do \ - ${INSTALL_DATA} $$file ${DOCSDIR}; \ - done - cd ${WRKSRC}/html; \ - for file in *.html; do \ - ${INSTALL_DATA} $$file ${DOCSDIR}/html; \ - done + ${INSTALL_DATA} ${WRKSRC}/doc/*.doc ${DOCSDIR} + ${INSTALL_DATA} ${WRKSRC}/html/*.html ${DOCSDIR}/html .endif .include <bsd.port.mk>
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-193-12/+11
| | | | | | | | . use PLIST_FILES and PORTDOCS; . get rid of pkg-plist; . pet portlint: use one space after WWW: at pkg-descr; . trim Makefile headers; . remove the indefinite article from COMMENT.
* - Avoid of using SITE_PERLaz2013-06-071-2/+1
| | | | | | | | - Remove depend on DB_File.pm since it part of perl distribution PR: ports/178877 Submitted by: az Approved by: matainer (timeout)
* - Update to 3.6.9.5miwi2013-06-043-19/+33
| | | | | PR: 179224 Submitted by: Ports Fury
* - Fix build with clangmiwi2013-06-041-0/+10
| | | | | PR: 179215 Submitted by: Ports Fury
* - Trim Makefile headerswen2013-06-013-15/+3
|
* - Update to 6.2.05miwi2013-05-292-5/+4
| | | | | PR: 179061 Submitted by: Ports Fury
* - Update to 3.5.1wen2013-05-265-105/+22
| | | | | | - Trim Makefile headers - Convert to optionsNG - Update WWW, MASTER_SITES and COMMENT
* - Update to 6.2.04miwi2013-05-212-3/+3
| | | | | PR: 178590 Submitted by: Ports Fury
* Convert USE_NCURSES by USES=ncursesbapt2013-05-061-2/+1
| | | | Convert USE_READLINE by USES=readline