aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* Use X_IMAKE_PORT instead of dist-specific imake dependencies. While here,anholt2004-07-241-6/+3
* Update to version 2.7.2.1.1krion2004-07-105-42/+35
* Apply a big libtool patch to allow porters to use the libtool installed bymarcus2004-07-101-1/+1
* Fix distsitevs2004-07-061-2/+1
* BROKEN: Checksum mismatchkris2004-07-031-0/+2
* Update to 4.6vs2004-07-027-51/+58
* BROKEN: Does not buildkris2004-07-021-0/+2
* Update to fix fetch. Rework PORTVERSION to be more like biology/fasta3linimon2004-07-014-9/+11
* Chase mastersite and fix checksum to unbreak. (Changes are inclusion of alinimon2004-07-012-8/+4
* Update to 1.7.6.1.linimon2004-06-304-11/+43
* Drop maintainershiplioux2004-06-241-1/+1
* Fix MASTER_SITES:vs2004-06-231-2/+2
* Add ariadne 1.3, programs to compare protein sequences andkrion2004-06-225-0/+60
* Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDENkris2004-06-222-1/+5
* BROKEN: Checksum mismatchkris2004-06-201-0/+2
* Replace explicit imake dependency with USE_IMAKE=yesanholt2004-06-181-5/+1
* Update to 20040613 releaselioux2004-06-132-3/+3
* - Remove obsolete MASTER_SITESkrion2004-06-081-2/+1
* - Update MASTER_SITESpav2004-06-021-3/+3
* [PATCH] biology/mopac patchsite fixedwin2004-06-011-1/+1
* [PATCH] biology/mopac distsite fixedwin2004-06-011-1/+1
* [PATCH] biology/gff2ps distsite fixedwin2004-06-011-3/+3
* - Update WWWpav2004-05-301-1/+1
* - Fix MASTER_SITESkrion2004-05-231-4/+1
* - Remove long time unresponsive MASTER_SITEpav2004-05-221-1/+0
* - Update MASTER_SITES and WWW: linekrion2004-05-222-2/+2
* Add forgotten patches...thierry2004-05-214-2/+62
* BROKEN: Broken pkg-plistkris2004-05-211-0/+2
* unbreak, only minor changes in the distfiles (see PR)eik2004-05-182-8/+7
* Add a missing BUILD_DEPENDS.thierry2004-05-111-0/+1
* Upgrade to 2.0b7 and unbreak.thierry2004-05-117-113/+128
* Fix MASTER_SITESmarkus2004-05-091-1/+1
* Make portlint happy by replacing space to tabmaho2004-05-072-4/+4
* - update to 4.5.3petef2004-05-026-17/+235
* - Honor CFLAGSkrion2004-04-161-1/+1
* BROKEN: Checksum mismatchkris2004-04-121-0/+2
* Mark this port BROKEN with gtk+-2.4.marcus2004-04-111-0/+2
* Tidy up whitespace.trevor2004-04-112-6/+6
* Trim whitespace.trevor2004-04-112-66/+66
* Add openbabel dependency (bento log forwarded by kris).trevor2004-04-091-0/+2
* Update to 1.7.8.trevor2004-04-083-16/+16
* After patching, remove the carriage-return characters from povchem.ctrevor2004-04-071-0/+2
* Chase home page.trevor2004-04-071-1/+1
* Fix build with gtk 2.4.adamw2004-04-051-1/+6
* Chase the glib20 update, and bump all affected ports' PORTREVISIONs.marcus2004-04-054-3/+4
* Remove category pkg/COMMENT files in favour of a COMMENT variable in thekris2004-04-022-1/+2
* SIZEify (maintainer timeout)trevor2004-03-3134-0/+38
* Add SIZE data.knu2004-03-221-0/+1
* Do not hardcord PICFLAGmaho2004-03-201-7/+1
* Backout previous change of PICFLAG, sincemaho2004-03-191-0/+6
* -fPIC is appropreate on all architectures.maho2004-03-191-6/+0
* Add size data, approved by maintainers.trevor2004-03-191-0/+1
* 1) Silent version up without changing the version numbermaho2004-03-183-6/+6
* Add size data.trevor2004-03-181-0/+1
* SIZEify.trevor2004-03-182-0/+2
* 1) update to 0.9.3maho2004-03-175-11/+44
* Whoa there, boy, that's a mighty big commit y'all have there...ade2004-03-141-1/+1
* - Update to version 2003.09.21krion2004-03-124-15/+9
* Insert "-l" into PATCH_ARGS, to cause the "patch" command to ignoretrevor2004-03-091-0/+1
* Add MD5 of 2004-01-06 version of povchem.c. Its contents aretrevor2004-03-091-1/+1
* Unmark as broken for 4.x; instead, mark as ignore for perl < 5.6.linimon2004-03-081-2/+2
* BROKEN on amd64 and ia64: Does not compile (missing -fPIC)kris2004-03-071-1/+7
* Maintainer reports being unable to look after this port any longer.linimon2004-03-071-1/+1
* - Update to version 0.4krion2004-02-282-3/+3
* - Fix MASTER_SITESkrion2004-02-281-1/+1
* Update to 20040226 releaselioux2004-02-273-3/+10
* BROKEN on alpha: Does not compilekris2004-02-231-1/+7
* BROKEN on alpha 5.x: does not compilekris2004-02-231-1/+7
* BROKEN: Checksum mismatchkris2004-02-221-0/+2
* BROKEN on 4.x: Configure failskris2004-02-221-1/+7
* BROKEN: Does not fetchkris2004-02-221-0/+2
* BROKEN: Checksum mismatchkris2004-02-221-0/+2
* Upgrade to 1.23.des2004-02-106-1001/+1125
* USE_SIZEifylioux2004-02-082-0/+2
* Correct whitespace in COMMENTkris2004-02-071-1/+1
* Use PLIST_FILES (bento-tested, marcus-reviewed).trevor2004-02-0610-5/+5
* Use PLIST_FILES.trevor2004-02-062-1/+1
* Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.marcus2004-02-0417-5/+17
* - Fix build on AMD64krion2004-02-022-2/+41
* - Update to 3.6.bpav2004-02-012-4/+3
* - Update to version 2003.11.25krion2004-01-292-2/+2
* Add SIZE.trevor2004-01-289-0/+11
* Yet another C++ fix.naddy2004-01-261-1/+9
* Use the CPIO macro defined in bsd.port.mk.trevor2004-01-221-1/+1
* Major update from 0.7.2 to 1.4 by new maintainer. This is almost a completelinimon2004-01-216-405/+1689
* silent updates of archives:maho2003-12-283-4/+8
* - Fix MASTER_SITESkrion2003-12-201-1/+1
* Mark as broken on 5.x due to the usual gcc terminating-character hassles.linimon2003-12-191-1/+7
* - Update to last snapshotpav2003-12-072-9/+6
* - Update checksum again, seems author removes .ps version of documentationpav2003-11-224-467/+31
* Define USE_PERL5_BUILD, not erroneous USE_PERL.trevor2003-11-202-2/+2
* Define USE_PERL to make Perl available for (mostly deprecated)trevor2003-11-202-0/+2
* - Unbreak on 5.xpav2003-11-203-7/+54
* - Update to new version 2003.11.17krion2003-11-176-66/+17
* unPERLify by using REINPLACE_CMD and SED where appropriate.marcus2003-11-162-3/+1
* Switch to wxgtk2.fjoe2003-11-141-1/+2
* Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.trevor2003-11-133-3/+3
* Remove my e-mail address from comment blocks of portstrevor2003-11-131-1/+1
* wxgtk-devel -> wxgtkfjoe2003-11-101-1/+2
* - Switch to wxgtk2fjoe2003-11-101-7/+9
* LIB_DEPENDS on libglut for libglut rather than soon-to-disappear Mesa3.anholt2003-11-081-1/+1
* Update to 2.0.7.adamw2003-11-083-4/+7
* Mark BROKEN: distfile has changed.anholt2003-11-071-0/+2
* ${MASTER_SITES} are slow. This patch adds a mirror site to helpjeh2003-11-061-1/+2
* Make this port use wxgtk 2.4.2.fjoe2003-11-053-7/+19
* Chase wxgtk library name (and version) change.fjoe2003-11-051-1/+1
* Pet portlint.linimon2003-11-041-1/+1
* Date: Tue, 04 Nov 2003 00:42:55 +0900edwin2003-11-041-1/+1
* Mark BROKEN (see bento logs). These ports are scheduled for removalkris2003-11-031-1/+1
* ports with possibly unreachable MAINTAINERsedwin2003-11-022-2/+2
* Chased new mastersite per distfile survey. Notified maintainer.linimon2003-10-261-1/+1
* utilize SITE_PERLijliao2003-10-244-387/+385
* Respect CC and CFLAGSkris2003-10-231-5/+11
* Cosmetic fix: use %%DOCSDIR%% macro.osa2003-10-2231-1259/+1259
* - Update to 0.5.2krion2003-10-213-297/+298
* Don't remove share/java/classes system directory.kris2003-10-191-1/+0
* Fixes the checksum problem, but doesn't fix the port; adds a BROKENlinimon2003-10-162-2/+3
* Update to 0.5.3.knu2003-10-153-2/+4
* update biology/nab: 4.5.1 -> 4.5.2daichi2003-10-145-20/+38
* BROKEN: Broken pkg-plistkris2003-10-131-0/+2
* BROKEN: Does not fetchkris2003-10-131-0/+2
* Port update (maintainer): biology/wiseedwin2003-09-242-2/+2
* Make portlint(1) happy by changing strip to ${STRIP_CMD}osa2003-09-242-2/+2
* Update port: biology/gperiodic to 2.0.6edwin2003-09-083-4/+5
* new port:biology/lsysexpedwin2003-09-035-0/+71
* Silent changes to the port distfile which *not* have significantmaho2003-09-021-2/+2
* - Add an end-of-string to each line of the inputkrion2003-08-281-7/+7
* Update to 0.5.2.knu2003-08-233-2/+13
* Fix build on python2.3perky2003-08-201-1/+6
* o Main modificationnork2003-08-192-9/+7
* As announced on May 6, remove the broken p5-bioperl-devel port.kris2003-08-088-686/+0
* BROKEN: Checksum mismatchkris2003-08-071-0/+2
* Fix python version detection routines to cope with python 2.3'sperky2003-08-021-1/+1
* Somehow pkg-plist is removed...maho2003-08-011-0/+128
* a) Update to 1.7.3maho2003-08-013-84/+18
* Add USE_XLIB=yes to compilemaho2003-07-311-0/+1
* Update to 0.5.1.knu2003-07-292-2/+2
* A new port garlic, free molecular viewer and editor, free molecularmaho2003-07-286-0/+399
* - Update to version 2.0.5krion2003-07-285-41/+25
* Some clean-up.maho2003-07-261-17/+14
* Duplicated the `pre-extract:' and `post-build:'maho2003-07-261-9/+0
* a) Some corrupts with Makefile and pkg-plist.maho2003-07-252-12/+26
* a) Forgot to update distinfo 52498maho2003-07-255-33/+69
* Update to 0.90maho2003-07-244-309/+328
* enhancement, build and install the opengl viewer, moldenogl.maho2003-07-194-74/+64
* honor CFLAGS and FFLAGSmaho2003-07-192-3/+4
* Maintainer update of biology/tinker port to version 4.0.maho2003-07-195-20/+42
* Add semi-colons(;) after declare statements that go in the povray scene fileleeym2003-07-143-7/+168
* o Change library name from libgd to libgd1.nork2003-07-122-3/+4
* s/NOPORTSDOCS/NOPORTDOCS/ [1]osa2003-07-112-6/+6
* update biology/nab: 4.4 -> 4.5.1daichi2003-07-0812-403/+393
* Update to 0.5.0.knu2003-06-263-5/+25
* update ports/biology/act to latest release (v2)daichi2003-06-233-988/+1603
* - update to 1.83erwin2003-06-183-3/+4
* Move inclusion of bsd.port.pre.mk later in the file for conditional BROKENkris2003-06-051-5/+5
* Assign MAINTAINER to ports@FreeBSD.org.adamw2003-06-051-1/+1
* Upgrade to 2003.01.21. Appears to only add some more file export/printhoek2003-05-227-40/+49
* Add back the WWW which was inexplicably deleted in a previoushoek2003-05-221-6/+11
* - fix build under gcc 3.3petef2003-05-191-1/+8
* Back out previous commit, the port was fixed a few days ago.kris2003-05-191-7/+1
* BROKEN on 5.1: bad C++kris2003-05-182-2/+14
* - Update to latest release.mich2003-05-145-62/+3
* BROKEN: Broken pkg-plistkris2003-05-071-0/+2
* Update to 2003.04.21arved2003-05-058-79/+59
* - unbreak on 4.x: add dependency on gdkpixbuf, fix Makefiles to compile withpetef2003-05-043-44/+30
* Updated to 0.8.6.maho2003-05-035-362/+283
* Update to 20030425 snapshotlioux2003-04-263-6/+6
* Remove USE_GNOMENG.marcus2003-04-183-3/+0
* Update the biology/tinker Makefile so it builds on -currentedwin2003-03-301-1/+6
* * Fix build with GCC3 (-CURRENT).naddy2003-03-255-24/+89
* Clear moonlight beckons.ade2003-03-0728-14/+14
* Retire comment file.trevor2003-03-012-1/+1
* Update to 20030227 snapshotlioux2003-02-282-2/+2
* De-pkg-commentlioux2003-02-242-1/+1
* De-pkg-comment.knu2003-02-2172-36/+36
* De-pkg-comment.knu2003-02-218-4/+4
* Fix install and packaging list.naddy2003-02-183-59/+67
* De-pkg-comment.knu2003-02-182-1/+1
* Update to 1.83.naddy2003-02-1613-182/+179
* * Update to 3.13.naddy2003-02-155-20/+7
* Add dependency on security/p5-Digest-MD5edwin2003-02-131-0/+3
* Update to version 0.5.1.naddy2003-02-128-68/+4
* Remove gaussian98kris2003-02-051-1/+0
* Delete biology/gaussian98. Maintain is too hard andmaho2003-02-0111-820/+0
* Update to 0.4.0.knu2003-01-293-14/+26
* add '-f' argument to rm so that the script always work even if alioux2003-01-241-1/+1
* New Port: biology/actedwin2003-01-166-0/+1031
* Add missing filekris2003-01-141-0/+1
* Add some missing fileskris2003-01-141-0/+4
* Update to 3.8arved2003-01-083-22/+6
* update biology/babel to properly output mm3 files.edwin2003-01-032-1/+93
* upgrade to 3.7ijliao2003-01-025-193/+255
* add missing includeijliao2002-12-291-0/+10
* fix build on -currentijliao2002-12-225-0/+53
* Fix typo: distribfold.org -> distributedfolding.orglioux2002-12-202-2/+2
* o Update to 20021105 snapshotlioux2002-12-192-4/+9
* Mark BROKEN due to "Unknown problem"lioux2002-11-251-0/+2
* unbroke by upgrade to 20021018ijliao2002-11-208-30/+72
* add treepuzzle 5.1ijliao2002-11-206-0/+41
* 1. add a missing dependency on png and unbreak.maho2002-11-201-2/+3
* o Rollback PORTCOMMENT modifications while this feature's implementationlioux2002-11-116-6/+3
* Update WWWarved2002-11-081-1/+1
* Updated to fix problems as stated in PR ports/42915edwin2002-11-073-2/+42
* Fix PORTCOMMENTs that were killing INDEX builds.adamw2002-11-072-2/+1
* Use PORTCOMMENT in the Makefile, and whack the pkg-comment.adamw2002-11-078-4/+8
* Modify replace RE to match syntax of sed now ("\)" -> ")"edwin2002-11-051-8/+8
* PERL -> REINPLACEedwin2002-11-044-10/+15
* PERL -> REINPLACEedwin2002-11-041-1/+2
* PERL -> REINPLACEedwin2002-11-042-2/+4
* Port needs perl to build.edwin2002-11-041-0/+2
* Make biology/avida building on -current againedwin2002-11-042-3/+2
* Add another entry for MASTER_SITES and unbreak with latest version of bisonpat2002-10-303-1/+25
* Update CATEGORIES as per ports/44331.tom2002-10-211-2/+2
* o Update to snapshot 20021015lioux2002-10-202-4/+17
* Fix dependency on wxgtkkris2002-10-191-1/+1
* CC, CXX, CFLAGS, PTHREAD_CFLAGS and PTHREAD_LIBS may contain `/' inknu2002-10-101-1/+1
* Connect distribfold to build after moving it from misc categorylioux2002-10-071-0/+1
* o New port distribfold version 0.1: distribfold.org distributed proteinlioux2002-10-0711-0/+374
* Use RUBY_MOD*.knu2002-10-072-31/+31
* - Unbreak fetching of distfiles. (Needs update as soon as freeze is over.)wjv2002-09-272-9/+7
* add forgotten "USE_REINPLACE=yes"ijliao2002-09-211-0/+1
* upgrade to 20020426ijliao2002-09-216-22/+16
* BROKEN: Does not fetchkris2002-09-211-0/+2
* BROKEN: Does not buildkris2002-09-191-0/+2
* add primer3 0.9ijliao2002-09-176-0/+437
* Flip is used to find/translate orfs.dinoex2002-09-106-0/+33
* "Wise2 is package that is focused on comparing DNA sequences atdinoex2002-09-107-0/+185
* Chase new name of wxgtk shared library.sobomax2002-09-091-1/+1
* Remove USE_NEWGCC, which is no longer supported or required.kris2002-08-311-1/+0
* Deploy USE_GNOMENG infrastructurelioux2002-08-302-2/+4
* o Fix examples directory path which is changed in last revision.perky2002-08-261-1/+5
* o Fix RUN_DEPENDS path (PMW -> Pmw)perky2002-08-252-4/+33
* Prefer <limits.h> over <values.h> as the latter has been removed fromkris2002-08-234-0/+44
* o Remove redundant dependency on py-tkinter.perky2002-08-221-1/+1
* Add a dependecy to x11-toolkits/pmwperky2002-08-221-1/+2
* New port L-Breeder version 1.0: Allows you to display and breedlioux2002-08-219-0/+96
* - Support CXXFLAGS properly.naddy2002-08-183-7/+22
* Update to version 3.6.a3.naddy2002-08-143-22/+7
* Add pymol 0.82, Free and Open-Source molecular modeling system.perky2002-08-138-0/+715
* Update to 0.3.9.knu2002-08-033-2/+3
* add libgenome 0.5.0ijliao2002-07-306-0/+381
* upgrade to 4.4ijliao2002-07-168-16/+97
* Use $PYNUMERIC in the dependencies.tg2002-07-151-2/+2
* - Add patch that will, for -CURRENT only, change: -pthread -> -lc_rwjv2002-07-112-0/+23
* Update to 0.3.8.knu2002-07-083-6/+29
* - Update to version 2.4.1wjv2002-07-054-111/+183
* Bump XForms lib. version.mikeh2002-07-041-1/+1
* Unbreak this port:glewis2002-06-162-586/+585
* Correct MASTER_SITES.petef2002-06-081-1/+1
* Note distribution term.sada2002-05-271-8/+6
generated by cgit (git 2.34.1) at 2024-12-05 09:29:32 +0800