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* - Remove SITE_PERL from *_DEPENDSaz2012-06-041-1/+1
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* - Update to 0.49sunpoet2012-06-032-4/+3
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* Set maintainership back to ports@cs2012-06-032-2/+2
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* - update png to 1.5.10dinoex2012-06-0115-16/+19
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* Remove non-serving mirrorcs2012-05-201-2/+1
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* - Adjust BOINC_* variables to be consistent with new system in boinc-clientpav2012-05-162-9/+9
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* - Update to 0.48sunpoet2012-05-032-5/+5
| | | | - Add BUILD_DEPENDS
* - Update to 1.3culot2012-04-262-3/+3
| | | | Changes: http://search.cpan.org/dist/Bio-GFF3/Changes
* - Update to 2.28wen2012-04-173-3/+4
| | | | ChangeLog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.28/Changes
* - Update to 1.2culot2012-04-163-16/+18
| | | | | | | - Add LICENSE (Artistic 1 & GPL 1) - Add TEST_DEPENDS Changes: http://search.cpan.org/dist/Bio-GFF3/Changes
* - Update to 0.47wen2012-04-112-3/+3
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* - Update to 1.0wen2012-03-223-4/+7
| | | | | | - Reset maintainer to perl@ Feature safe: yes
* - Revert ports/165605 as requested by portmgr@pgollucci2012-03-141-1/+7
| | | | | | | | | Note: devel/p5-B-Size and devel/p5-Devel-Arena where intentionally not restored. PR: ports/165605 Approved by: portmgr (bapt) Feature safe: yes (I sure hope so)
* - Remove ports that only work with < perl 5.12 (devel/p5-B-Size, ↵pgollucci2012-03-091-7/+1
| | | | | | | | | | | | | | | devel/p5-Devel-Arena) - Remove conditionals for PERL_LEVEL < 501200 - Remove regression-test targets b/c this will be centralized in Mk/bsd.perl.mk - Other minor cleanups RUN_DEPENDS = ${BUILD_DEPENDS} -> RUN_DEPENDS:= ${BUILD_DEPENDS} PR: ports/165605 Submitted by: pgollucci (myself) Approved by: portmgr (linimon) Exp Run by: linimon Tested by: make index
* - Update to 1.59wen2012-03-063-1070/+1129
| | | | | | PR: ports/165582 Submitted by: wen@ (myself) Approved by: Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer, via email)
* - Update to 0.46wen2012-03-053-3/+12
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* - Update to 0.4.5wen2012-02-232-3/+3
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* - Update MASTER_SITES and WWW: linemiwi2012-02-203-20/+28
| | | | | | | | - Add LICENSE - Support PLIST_FILES PR: 164985 Submitted by: Ports Fury
* update to 1.5.0.1.maho2012-02-164-40/+76
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* - Update to 0.78sunpoet2012-02-113-44/+58
| | | | | | - Sort TEST_DEPENDS, MAN1, MAN3 and PLIST Changes: http://search.cpan.org/dist/Bio-NEXUS/doc/changes.txt
* - Update to 2.26sunpoet2012-02-113-5/+7
| | | | Changes: http://search.cpan.org/dist/Bio-Graphics/Changes
* - Update to 1.22sunpoet2012-02-092-3/+3
| | | | Changes: http://search.cpan.org/dist/Bio-MAGETAB/Changes
* - Update to 0.77wen2012-02-093-5/+8
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* - fix build with gcc46dinoex2012-02-071-7/+4
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* - Mark BROKEN on FreeBSD 9.X and up: does not compilepav2012-02-061-1/+7
| | | | | | gcc: AdFrameworkFunctions.m: Objective-C compiler not installed on this system Reported by: pointyhat
* - Respect CCmiwi2012-01-281-1/+2
| | | | | | PR: 163172 Submitted by: Jan Beich <jbeich@tormail.net> Approved by: maintainer timeout
* At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450eadler2012-01-225-5/+5
| | | | | | | | | | ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are currently broken. This is a temporary measure until we organically stop using := or someone(s) spend a lot of time changing all the ports over. Explicit duplication > := > = and this just moves ports one step to the left Approved by: portmgr
* - Update to 3.23sylvio2012-01-172-3/+3
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* Chase pdflib.so version and bump PORTREVISION accordingly.ale2012-01-101-2/+2
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* - The proper acronym for Apache Software License 2 is really AL2tabthorpe2012-01-091-1/+1
| | | | | | | | | - Thanks to crees@ for generating the initial patch PR: ports/163521 Submitted by: Pedro Giffuni <pfg apache.org> Hat: portmgr Exp run by: pav
* - Update to 0.87wen2011-12-233-4/+6
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* - Update to 1.21sunpoet2011-11-242-4/+5
| | | | | Changes: http://search.cpan.org/dist/Bio-MAGETAB/Changes Feature safe: yes
* - unbreakgahr2011-11-172-2/+29
| | | | Feature safe: yes
* Does not build on powerpc-9: error in pthreads.linimon2011-11-101-0/+4
| | | | | Hat: portmgr Feature safe: yes
* - Remove WITH_FBSD10_FIX, is no longer neededmiwi2011-11-091-1/+0
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* - Mark BROKEN: does not compile with new fltkpav2011-11-051-0/+2
| | | | Reported by: pointyhat
* - Fix fetch and update WWWpav2011-11-052-2/+2
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* - Fix build on FreeBSD 10miwi2011-10-291-0/+1
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* - Update to 0.45sunpoet2011-10-292-3/+3
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* The vast majority of pkg-descr files had the following format when theydougb2011-10-243-10/+1
| | | | | | | | | | | | | | | | had both lines: Author: ... WWW: .... So standardize on that, and move them to the end of the file when necessary. Also fix some more whitespace, and remove more "signature tags" of varying forms, like -- name, etc. s/AUTHOR/Author/ A few other various formatting issues
* - remove maintainer tags from pkg-descreadler2011-10-2311-27/+0
| | | | | Approved by: portmgr Approved by: bapt (mentor)
* - Update to 0.43sunpoet2011-10-173-3/+7
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* - Update to 0.44wen2011-10-132-4/+4
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* - ${FFLAGS} might contain commaspav2011-10-111-1/+1
| | | | Reported by: pointyhat
* - Update to 0.7wen2011-10-102-3/+3
| | | | ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.7/Changes
* - Fix LICENSE (Artistic 1 instead of Artistic 2)culot2011-10-071-1/+1
| | | | | | | - Pet portlint(1) PR: ports/161336 Submitted by: Simon Olofsson <simon@olofsson.de>
* - Update to 2.25sunpoet2011-10-033-22/+23
| | | | | | | - Sort MAN3 and PLIST - Pet portlint Changes: http://search.cpan.org/dist/Bio-Graphics/Changes
* - Add build depends to silence build warningsswills2011-09-251-1/+2
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* - Fix missing DEPENDS to silence build warningsswills2011-09-251-1/+2
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* - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)amdmi32011-09-245-10/+8
| | | | | | | | | - Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead PR: 157936 Submitted by: myself Exp-runs by: pav Approved by: pav
* - Update to 0.6wen2011-09-222-3/+3
| | | | ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.6/Changes
* Change maintainer address to my FreeBSD addresscs2011-09-152-2/+2
| | | | Approved by: wen@ (mentor)
* - Fix MASTER_SITES and WWW: linewen2011-08-262-33/+19
| | | | | | | | - Add LICENSE - Support CC/CFLAGS properly PR: ports/160083 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* - Add missing BUILD_DEPENDSswills2011-08-181-1/+2
| | | | | | PR: ports/159827 Submitted by: swills (me) Approved by: wen (maintainer)
* Remove USE_GNOME=gnometarget from ports. It has been a empty keyword sincekwm2011-08-122-2/+0
| | | | | | | mid 2008. PR: ports/159624 Submitted by: Ruslan Mahmatkhanov <cvs-src@yandex.ru>
* - Update to 1.5.1wen2011-08-113-12/+41
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* - Update to 0.40culot2011-08-102-3/+6
| | | | - Add LICENSE (Artistic 1 & GPLv1)
* Remove WWW entries from unmaintained ports that return 404 or where the domainehaupt2011-08-031-2/+0
| | | | disappeared.
* Deprecate port with no more public distfilesbapt2011-08-021-0/+3
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* Bye bye abandonwares (part 2)bapt2011-08-0130-726/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | 2011-08-01 benchmarks/rawio: Looks like an abandonware, no more public distfiles 2011-08-01 benchmarks/tmetric: Looks like abandonware, no more public distfiles 2011-08-01 biology/L-Breeder: Looks like an abandonware, no more public distfile 2011-08-01 biology/crimap: Looks like an abandonware, no more public distfile 2011-08-01 biology/distribfold: No more upstream, looks like an abandonware 2011-08-01 biology/kinemage: Looks like an abandonware, no more public distfile 2011-08-01 biology/lsysexp: Looks like an abandonware, no more public distfile 2011-08-01 chinese/chm2html: Looks like an abandonware, no more public distfile 2011-08-01 chinese/ntuttf: No more public distfiles available 2011-08-01 chinese/reciteword: Looks like an abandonware, no more public distfile 2011-08-01 chinese/tocps: No more pulic distfiles 2011-08-01 chinese/xttmgr: Looks like an abandonware, no more public distfile 2011-08-01 comms/mserver: Looks like an abandonware, no more public distfiles 2011-08-01 comms/qicosi: Looks like an abandonware, no more public distfile 2011-08-01 comms/sms_client: Looks like an abandonware, no more public distfile 2011-08-01 comms/smstools: Looks like an abandonware, no more public distfile 2011-08-01 converters/siconv: Looks like an abandonware, no more public distfiles 2011-08-01 converters/utf8conv: Looks like an abandonware, no more public distfile 2011-08-01 databases/pgcluster: Looks like an abandonware, no more public distfile 2011-08-01 databases/py-MySQL: Please use databases/py-MySQLdb instead 2011-08-01 databases/py-SQLDict: Looks like an abandonware, no more public distfile 2011-08-01 databases/py-rrdpipe: Looks like an abandonware, no more public distfile 2011-08-01 databases/sybase_ase: no more public distfiles available
* - Update to 0.39sunpoet2011-08-013-3/+34
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* Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,linimon2011-07-212-2/+2
| | | | | | | | | | | | | | | | remove support for them from bsd.java.mk. As Jikes is not available in Java 1.5 or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports which used it (only occurences were USE_JIKES=no). Support for the Blackdown VM is also removed, as it is not available in Java 1.5 and higher. Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5. While here, replace static values of JAVA_VERSION in files/*.in by %%JAVA_VERSION%% . PR: ports/158969 Submitted by: rene Tested on: pointyhat-west -exp
* - Update to 0.38sunpoet2011-07-163-50/+64
| | | | - Sort MAN3 and PLIST
* - Update to 1.20sunpoet2011-07-132-73/+71
| | | | | | - Sort RUN_DEPENDS and MAN3 Changes: http://search.cpan.org/dist/Bio-MAGETAB/Changes
* - kick MD5miwi2011-07-021-1/+0
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* - Use USERS and GROUPScrees2011-06-282-47/+3
| | | | | | | | - Use ${SH} instead of calling script directly PR: ports/157575 Submitted by: Chris Rees (utisoft@gmail.com) Approved by: tabthorpe (co-mentor)
* - Fix *_DEPENDS after the repocopy of databases/py-sqlalchemynivit2011-06-251-1/+2
| | | | | (This port doesn't yet support SQLAlchemy 0.7.X) - Bump PORTREVISION
* Switch dependency on povray to povray-meta port.makc2011-06-211-2/+2
| | | | Remove MD5 sum while I'm here.
* Another bunch of deprecation: no more public distfiles and/or abandonwarebapt2011-06-171-0/+3
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* Another bunch of deprecation: no more public distfiles and/or abandonwarebapt2011-06-163-0/+9
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* - Update to 0.5wen2011-06-102-3/+3
| | | | ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.5/Changes
* Update to 1.1.04jlaffaye2011-06-105-126/+35
| | | | | | PR: ports/157527 Submitted by: Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> Approved by: bapt (mentor)
* deprecate and set expiration date:bapt2011-06-091-0/+3
| | | | it is an abandonware and it is unmaintain for very long
* - Update to 0.4.3wen2011-06-022-3/+3
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* - update to 2.24bapt2011-06-023-3/+10
| | | | | - add licenses - changes: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.24/Changes
* - Update to 1.57wen2011-05-243-111/+18
| | | | | | PR: ports/156329 Submitted by: Wen Heping (myself) Approved by: maintainer
* Update to 1.6. Web site has been moved.maho2011-05-114-10/+11
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* Update math/gsl to 1.15, and adjust PORTREVISIONbf2011-05-101-1/+2
| | | | and LIB_DEPENDS of dependent ports
* - Update to 0.4wen2011-05-092-3/+3
| | | | http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.4/Changes
* update to 1.4.1maho2011-05-093-8/+41
| | | | Notified by: Alvin Oga
* - Update to 2.11swills2011-05-092-3/+3
| | | | Changes: http://cpansearch.perl.org/dist/Bio-Das-Lite/Changes
* Bump PORTREVISION after open-mofit updatemakc2011-05-024-2/+4
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* Fix build with open-motif-2.3.3makc2011-05-023-7/+72
| | | | | | PR: ports/154044 Submitted by: Mikhail Tsatsenko <m.tsatsenko at gmail.com> Exp-runs by: pav
* - Updated WWW: to a working linkglarkin2011-04-231-14/+17
| | | | | | | - Copied unbranded distfile (dotter.LIN) to LOCAL/glarkin for mirroring to MASTER_SITE_LOCAL and prevention of fetch checksum error. [1] Reported by: pointyhat (via miwi)
* Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.wen2011-04-225-0/+49
| | | | | | | All they do is convert back and forth between low-level Perl data structures and GFF3 text. WWW: http://search.cpan.org/dist/Bio-GFF3/
* - Update to 0.4.2wen2011-04-132-3/+3
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* Update to GNU make 3.82 after numerous -exp runs.ade2011-04-121-0/+11
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* - Update to 0.36wen2011-04-013-4/+14
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* - Get Rid MD5 supportmiwi2011-03-1983-110/+0
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* - Take maintainershipwen2011-03-141-1/+1
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* - Reassign to the heaptabthorpe2011-03-131-1/+1
| | | | PR: ports/155507 ports/155508
* - Update to 0.35wen2011-02-282-3/+4
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* - Move over to python2.5 or highermiwi2011-02-252-2/+2
| | | | - While here kick md5
* - Update to 0.8wen2011-02-152-4/+3
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* - Update to 1.12.5culot2011-02-113-4/+4
| | | | Changes: http://sourceforge.net/news/?group_id=100316&id=297223
* - Update to 5.1.09miwi2011-01-317-470/+508
| | | | | | PR: 154359 Submitted by: Ruslan Mahmatkhanov <cvs-src@yandex.ru> Feature safe: yes
* - Unbreak the port; I'm not sure how it could possibly work beforepav2011-01-282-12/+3
| | | | | Reported by: pointyhat Feature safe: yes
* - Change depobj for fasta3 to something that does not change on fasta updatespav2011-01-281-1/+1
| | | | | Reported by: pointyhat Feature safe: yes
* - Update to 36.3.2 to fix distfile fetching on pointyhatbeat2011-01-273-16/+13
| | | | | | PR: ports/154267 Submitted by: Fernan Aguero <fernan AT iib.unsam.edu.ar> (maintainer) Feature safe: yes
* - Fix fetchpav2011-01-251-1/+1
| | | | | Reported by: pointyhat Feature safe: yes
* - Fix pkg-plist, got the wrong version beforepgollucci2010-12-311-0/+9
| | | | Reported by: pointyhat via pav
* - DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed.pgollucci2010-12-301-1/+0
| | | | | | | PR: ports/153292 Submitted by: myself (pgollucci) Tested by: -exp run by pav Approved by: portmgr (pav)
* - Update to 1.4.1pgollucci2010-12-273-149/+143
| | | | | | | | | - Remove MD5 PR: ports/153394 Submitted by: myself (pgollucci) Approved by: mauricio@arareko.net (maintainer) Sponsored by: RideCharge Inc. / TaxiMagic
* - Use canonical format for FreeBSD.org MAINTAINER addressessunpoet2010-12-262-2/+1
| | | | | | | | - Remove obsolete MD5 checksum while I'm here PR: ports/152844 Submitted by: sunpoet (myself) Approved by: miwi (with portmgr hat)
* - Update to 2.18wen2010-12-232-3/+3
| | | | ChangeLog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.18/Changes
* - Update to 0.34wen2010-12-232-3/+3
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* - Fix fetchwen2010-12-212-2/+3
| | | | Reported by: QAT@
* - Update to 0.33wen2010-12-163-4/+4
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* - Update to 0.32pgollucci2010-12-133-3/+11
| | | | | With Hat: perl@ Changes: http://search.cpan.org/dist/Bio-Phylo/Changes
* - fix fetch: wget is not required for fetchingpgollucci2010-12-122-6/+0
| | | | Reported by: QAT
* Sync to new bsd.autotools.mkade2010-12-045-5/+5
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* - Update to 0.4.1wen2010-12-022-4/+3
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* Improve port description.danfe2010-11-291-7/+15
| | | | Approved by: maintainer timeout since December 2009
* - Also remove them from pkg-plist lists not from me that crept inpgollucci2010-11-241-1/+0
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* - Update to 0.31wen2010-11-223-3/+7
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* - Update to 2.1wen2010-11-222-4/+3
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* - Update to 0.30wen2010-11-172-75/+76
| | | | | PR: ports/152205 Submitted by: Gea-Suan Lin <gslin@gslin.org>
* Fix plist.skreuzer2010-11-171-1/+1
| | | | Reported by: QAT
* - Update to 2.15wen2010-11-163-196/+201
| | | | | | | Changelog: http://search.cpan.org/src/LDS/Bio-Graphics-2.15/Changes PR: ports/152189 Submitted by: Gea-Suan Lin <gslin@gslin.org>
* - Update to 1.5.0wen2010-11-103-4/+41
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* - Update to 0.28jadawin2010-11-093-7/+3
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* - Unbreak build: CPP is now part of MAKE_ENVpav2010-11-081-1/+1
| | | | Reported by: pointyhat
* - Update to 2.10wen2010-11-042-7/+6
| | | | Changelog: http://search.cpan.org/src/RPETTETT/Bio-Das-Lite-2.10/Changes
* - Unbreak by removing some old and adding some new master sitesrene2010-10-311-5/+4
| | | | | | - Bump PORTREVISION PR: ports/151733 Submitted by: Chris Petrik [c.petrik.sosa gmail.com]
* - Update to 0.4.0wen2010-10-262-4/+4
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* - Update to 0.26wen2010-10-253-5/+8
| | | | - Reset maintainer to perl@
* - Update to 0.22wen2010-10-223-20/+20
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* Update my MAINTAINER address to culot@FreeBSD.org.culot2010-10-201-1/+1
| | | | Approved by: sahil@ (mentor)
* - Update to 2.14wen2010-10-192-4/+4
| | | | ChangeLog: http://search.cpan.org/src/LDS/Bio-Graphics-2.14/Changes
* Punt autoconf267->autoconf268ade2010-10-161-1/+1
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* - Update to 4.2.0wen2010-10-083-5/+6
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* Round one migration of ports from automake{19,110} to automake111ade2010-10-062-2/+2
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* - Add an additional MASTER_SITESsunpoet2010-10-011-1/+2
| | | | | | PR: ports/151112 Submitted by: gjb (maintainer) Approved by: pgollucci (mentor)
* Mark BROKEN: does not fetch.erwin2010-09-301-0/+1
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* - Update to 2.13wen2010-09-263-4/+5
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* - Update to 0.76wen2010-09-252-4/+4
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* Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,mm2010-09-211-1/+2
| | | | | | p5-IO-Compress-Zlib and p5-IO-Compress-Bzip2 modules to p5-IO-Compress. Explicitly depend on p5-IO-Compress only if PERL_LEVEL < 500903 Bump PORTREVISION
* Also broken on sparc64 (and, by implication, ia64).linimon2010-09-171-2/+2
| | | | Hat: portmgr
* Update to 1.3r1.3913.maho2010-09-174-636/+699
| | | | | | Actually the version number is from SVN, and maho@ manually checked out from SVN. The source archive is not distributed as tar ball.
* - Update to 4.1.0wen2010-09-163-5/+28
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* Autotools update. Read ports/UPDATING 20100915 for details.ade2010-09-161-1/+2
| | | | | Approved by: portmgr (for Mk/bsd.port.mk part) Tested by: Multiple -exp runs
* - Update to 4.4cwen2010-09-082-4/+4
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* - Update to 0.75wen2010-09-073-6/+12
| | | | - Reset maintainer to perl@
* - Update to 1.13wen2010-09-072-4/+4
| | | | | PR: ports/150317 Submitted by: Frederic Culot <frederic@culot.org>
* - Update MAINTAINER to submitters new mail addressdecke2010-09-041-1/+1
| | | | | | PR: ports/150274 Submitted by: Glen Barber <glen dot j dot barber at gmail dot com> (maintainer) Approved by: beat (co-mentor, implicit)
* - Update to 2.10.0sahil2010-08-215-29/+13
| | | | | | | | | | | - Add LICENSE - Mark MAKE_JOBS_SAFE - Eliminate unnecessary patch - Note new homepage in pkg-descr - Pass maintainership to submitter PR: ports/149827 Submitted by: C-S <c-s@c-s.li>
* - Update USE_PYTHON in Makefile to reflect upstream Pythonglarkin2010-08-181-1/+1
| | | | | | | | dependency version requirement PR: ports/149251 Submitted by: glarkin Approved by: wen (via email)
* Update to 1.12:az2010-08-182-5/+5
| | | | | | | | - dependency on MooseX::FollowPBP added - dependency on Moose::Policy removed PR: ports/149612 Submitted by: Frederic Culot <frederic@culot.org>
* - Update to 2.1.5lwhsu2010-08-042-7/+12
| | | | | | | - Pass maintainership to submitter PR: ports/149247 Submitted by: C-S <c-s AT c-s.li>
* Fix typo in maintainer mail addressbapt2010-08-031-1/+1
| | | | | Submitted by: Frederic Culot <frederic _at_ culot.org> (maintainer) Approved by: jadawin@ (co-mentor)
* - Update to 1.12.4bapt2010-08-022-6/+11
| | | | | | | | | - Add libcurl as dependency - Submitter is now maintainer PR: ports/149079 Submitted by: Frederic Coulot <frederic _at_ coulot.org> (maintainer) Approved by: jadawin@ (co-mentor)
* - Update the libmap instructions for amd64/8pav2010-07-292-4/+14
| | | | Submitted by: Rick van der Zwet <info@rickvanderzwet.nl>
* - Update to 1.54wen2010-07-023-49/+146
| | | | | | | PR: ports/148274 Submitted by: Ju Pengfei <jupengfei@gmail.com> Approved by: maintainer Feature safe: yes
* - Update to 2.11wen2010-06-302-4/+4
| | | | Feature safe: yes
* - Update to 1.17wen2010-06-302-4/+4
| | | | Feature safe: yes
* - Update to 1.16wen2010-06-242-4/+4
| | | | Feature safe: yes
* - Update to 2.04wen2010-06-223-7/+6
| | | | | - Pass maintainership to perl@ Feature safe: yes
* BROKEN should not be quoted.erwin2010-06-131-1/+1
| | | | No functional change.
* - Update to 1.15wen2010-06-122-5/+4
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* Update to 1.10.tobez2010-06-112-7/+6
| | | | Changes: http://search.cpan.org/dist/Bio-MAGETAB/Changes
* - Update to 1.4.0pgollucci2010-06-083-75/+188
| | | | | - Sort pkg-plist - seperate NOPORTDOCS and NOPORTEXAMPLES
* LICENSE GPLv2dinoex2010-06-062-1/+3
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* LICENSE LGPL21dinoex2010-06-051-0/+2
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* - Update to 1.4.1wen2010-06-013-4/+25
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* Bounce PORTREVISION for gettext-related ports. Have fun, ya'll.ade2010-05-311-1/+1
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* - Update to 3.1.6sylvio2010-05-313-5/+5
| | | | | PR: ports/147194 Submitted by: Glen Barber <glen.j.barber@gmail.com> (maintainer)
* - drop USE_GNUSTEP_PREFIXdinoex2010-05-304-320/+318
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* - Update to 4.0.1wen2010-05-242-4/+4
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* - fix build for gnustep-base 1.21.0dinoex2010-05-241-2/+3
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* - Update to 1.12.2wen2010-05-213-6/+7
| | | | - Reset maintainer
* - Update to 2.09wen2010-05-182-4/+4
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* - Update to 2.0.8wen2010-05-143-5/+4
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* - Update to 2.0.7wen2010-05-102-5/+5
| | | | - Set maintainer to perl@
* - Update to 3.1.4sylvio2010-05-093-11/+18
| | | | | PR: ports/146411 Submitted by: Glen Barber <glen.j.barber@gmail.com> (maintainer)
* - Update to 1.00wen2010-05-082-5/+6
| | | | - Set maintainer to perl@
* - Removed BROKEN because file fetches and checksums correctlyglarkin2010-04-291-3/+2
| | | | | | | - Added another MASTER_SITES for redundancy PR: ports/144733 Submitted by: Fernan Aguero <fernan.aguero@gmail.com> (maintainer)
* - Update to 2.04wen2010-04-202-4/+5
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* - Update to 4.4awen2010-04-202-7/+7
| | | | - Update my mail address to FreeBSD
* - update to 0.81dinoex2010-04-143-10/+32
| | | | - fix build on amd64
* - Update to 6.2.0wen2010-04-076-75/+232
| | | | | Submitted by: Wen Heping(myself) Approved by: maintainer(via Email)
* - Update to 2.03wen2010-04-022-4/+4
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* Mark various ports as broken or ignore on powerpc.linimon2010-04-013-3/+21
| | | | While here, remove remnants of alpha.
* - Update to 2.02wen2010-03-303-5/+6
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* - Bump PORTREVISION to chase the update of math/gslwen2010-03-291-2/+2
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* - update to 1.4.1dinoex2010-03-2818-20/+22
| | | | | Reviewed by: exp8 run on pointyhat Supported by: miwi
* - Update to 3.1.3wen2010-03-242-5/+5
| | | | | | | - Pass maintainership to submitter PR: ports/144992 Submitted by: Glen Barber <glen.j.barber@gmail.com>
* - Chase x11-toolkits/fltk updategahr2010-03-242-5/+5
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* - Update to 3.22sylvio2010-03-222-4/+4
| | | | Approved by: itetcu (mentor)
* - Update to 0.3.9wen2010-03-192-4/+4
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* - Update to 2.01wen2010-03-102-4/+4
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* - Update to 0.21wen2010-03-093-47/+41
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* - Update to 0.18wen2010-03-033-35/+72
| | | | | | - Adopt Feature safe: yes
* p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XMLwen2010-03-015-0/+42
| | | | | | | | over HTTP primarily for biological-data). WWW: http://search.cpan.org/dist/Bio-Das-Lite/ Feature safe: yes
* - Update to 0.7wen2010-02-243-9/+8
| | | | Feature safe: yes
* - Reset more ports I don't use anymorepgollucci2010-02-111-1/+1
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* Update to 3.1.2edwin2010-02-102-4/+4
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* - Update to 2.00wen2010-02-103-5/+5
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* - update to jpeg-8dinoex2010-02-0518-18/+19
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* - Update to 0.99wen2010-02-032-5/+5
| | | | - Update my mail address to FreeBSD
* - Update to 3.1.1miwi2010-02-035-88/+40
| | | | | PR: 143437 Submitted by: Ports Fury
* - use $SUB_FILES to dynamically adjust pkg-messagepgollucci2010-01-311-2/+1
| | | | | | PR: ports/142408 Submitted by: Sevan Janiyan <venture37@geeklan.co.uk> Approved by: fernan@iib.unsam.edu.ar (maintainer)
* - Remove unneeded dependencies which is in perl-5.8.9 distkuriyama2010-01-294-11/+7
| | | | | | (part 19; last!). Approved by: portmgr (itetcu)
* - actually remove old patchpgollucci2010-01-171-31/+0
| | | | Reported by: QAT
* - Fix on amd64pgollucci2010-01-174-0/+60
| | | | | PR: ports/142472 Submitted by: Edmund Sumbar <esumbar@ualberta.ca>
* - Remove unneeded dependencies which is in perl-5.8.9 dist from portskuriyama2010-01-161-2/+2
| | | | | | | | maintained by (perl|ports|kuriyama)@FreeBSD.org. - Targets are: Test::Simple, Digest::MD5, Locale-Maketext, ExtUtils::MakeMaker, ExtUtils::ParseXS, File::Temp, Getopt::Long, Encode, Digest, Pod::Parser, File::Spec.
* - SUB_FILES += pkg-messagepgollucci2010-01-101-4/+1
| | | | | | PR: ports/142407 Submitted by: Sevan Janiyan <venture37@geeklan.co.uk> Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
* - Update to 1.03wen2010-01-092-5/+5
| | | | - Update my mail address to FreeBSD
* - SBU_FILES += pkg-messagepgollucci2010-01-084-56/+54
| | | | | PR: ports/142409 Submitted by: Sevan Janiyan <venture37@geeklan.co.uk>
* - Update to 1.995wen2010-01-072-4/+4
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* - Update to 1.53wen2010-01-063-99/+39
| | | | | | PR: ports/142221 Submitted by: Wen Heping (myself) Approved by: maintainer
* python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)wen2009-12-295-0/+35
| | | | | | reader for python. WWW: http://simon.net.nz/articles/python-nexus
* - Fix fetch errorwen2009-12-271-2/+2
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* - Update to 0.3.7wen2009-12-242-4/+4
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* - Update to 7.1.11miwi2009-12-224-41/+49
| | | | | PR: 141812 Submitted by: Ports Fury
* - Update to 0.3.5wen2009-12-212-4/+4
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* For ports maintained by ports@FreeBSD.org, remove names and/ordougb2009-12-2111-22/+0
| | | | | | | | e-mail addresses from the pkg-descr file that could reasonably be mistaken for maintainer contact information in order to avoid confusion on the part of users looking for support. As a pleasant side effect this also avoids confusion and/or frustration for people who are no longer maintaining those ports.
* - Update to 1.1.4wen2009-12-182-11/+11
| | | | | Submitted by: Wen Heping (myself) Approved by: maintainer (via Email)
* - Update to 1.4wen2009-12-173-30/+126
| | | | - Update my mail address to FreeBSD
* - Update to 0.3.4wen2009-12-162-4/+4
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* - Turn over a bunch of p5- ports that change infrequently to perl@pgollucci2009-12-141-1/+1
| | | | so more people can look at them.
* - Update to 1.994wen2009-12-113-4/+6
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* - Update to 0.3.3wen2009-12-063-7/+7
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* - Update to 1.993wen2009-12-042-4/+4
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* - Update to 1.6.1wen2009-12-045-912/+939
| | | | Approved by: maintainer (via Email)
* Chase math/gsl update,makc2009-12-021-2/+2
| | | | bump PORTREVISION
* - Update to 2.0.12wen2009-11-292-6/+5
| | | | - Update my mail address to FreeBSD
* - Update my mail address to FreeBSDsylvio2009-11-281-1/+1
| | | | Approved by: miwi (mentor)
* - Mark MAKE_JOBS_UNSAFEpav2009-11-212-0/+2
| | | | Reported by: pointyhat
* - Update to 1.992wen2009-11-202-5/+5
| | | | - Update my mail address to FreeBSD
* - broken checksum mismatchmiwi2009-11-191-0/+2
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* - Mark MAKE_JOBS_UNSAFEpav2009-11-191-0/+1
| | | | Reported by: pointyhat
* pyfasta is a python module for fast, memory-efficient, pythonicwen2009-11-185-0/+52
| | | | | | access to fasta sequence files. WWW: http://bitbucket.org/brentp/biostuff/src/
* - Update to 21.1.1wen2009-11-184-29/+17
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* Velvet is a de novo genomic assembler specially designed for short readamdmi32009-11-077-0/+244
| | | | | | | | | | | | | | | sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI). Citation: Velvet: algorithms for de novo short read assembly using de Bruijn graphs. D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008) WWW: http://www.ebi.ac.uk/~zerbino/velvet/ PR: 140147 Submitted by: Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
* - Annotate that 8.x no longer needs libmap hackpav2009-10-011-1/+1
| | | | Reported by: rene
* - Update to 4.0.0wen2009-09-234-13/+23
| | | | | | | | | - Update my mail address to FreeBSD PR: ports/137652 Submitted by: wenheping@gmail.com(myself) Approved by: miwi(mentor) Feature safe: yes
* Update to Crux 1.2.0.jasone2009-09-203-26/+29
| | | | Feature safe: yes
* UNBREAK: Probably was a temporary failure, checksums are ok now.garga2009-09-161-2/+0
| | | | Feature safe: yes
* -Update to 3.69miwi2009-09-162-14/+10
| | | | | | PR: 138813 Submitted by: Ports Fury Feature safe: yes
* Bump PORTREVISION for everything that sets USE_FORTRAN=yes which nowgerald2009-09-136-5/+6
| | | | | | implies lang/gcc44 up from lang/gcc43. Approved by: portmgr
* - Update to 1.14jadawin2009-09-082-4/+4
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* - Update to 138038miwi2009-09-054-444/+152
| | | | | | PR: 138038 Submitted by: Wen Heping <wenheping@gmail.com> Approved by: maintainer
* - Update to 0.982miwi2009-08-292-5/+5
| | | | | PR: 138264 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
* Bio::SCF module allows you to read and update (in a restrictedmiwi2009-08-295-0/+46
| | | | | | | | | | | way) SCF chromatographic sequence files. It is an interface to Roger Staden's io-lib. See the installation directions for further instructions. WWW: http://search.cpan.org/dist/Bio-SCF/ PR: ports/138263 Submitted by: Wen Heping <wenheping at gmail.com>
* Io_lib is a library of file reading and writing code to provide amiwi2009-08-295-0/+107
| | | | | | | | | | | | general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. WWW: http://staden.sourceforge.net/ PR: ports/138254 Submitted by: Wen Heping <wenheping at gmail.com>
* - Update to 3.21.araujo2009-08-282-5/+5
| | | | | | | - Reset maintainer to submitter. PR: ports/138192 Submitted by: Sylvio Cesar <scjamorim@bsd.com.br>
* - Update to 1.12miwi2009-08-282-5/+4
| | | | | PR: 138230 Submitted by: Wen Heping <wenheping@gmail.com>
* Update to 35.4.9makc2009-08-232-4/+4
| | | | | PR: ports/137991 Submitted by: Fernan Aguero (maintainer)
* Bio::NEXUS package provides an object-oriented, Perl-basedmiwi2009-08-235-0/+91
| | | | | | | | | | | | | | | | | | | applications programming interface (API) to the NEXUS file format of Maddison, et al., 1997 (Syst. Biol. 46:590-621). NEXUS is a powerful and extensible format designed for use in evolutionary analysis, including the analysis of molecular sequence data as well as classical morphological and life-history data. NEXUS is the input or output format for software such as PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and so on. This package also contains the demonstration applications nexplot.pl (plot character data with a tree) and nextool.pl (allowing programmatic editing, e.g., selecting particular clades or subsets of data). WWW: http://search.cpan.org/dist/Bio-NEXUS/ PR: ports/137983 Submitted by: Wen Heping <wenheping at gmail.com>
* - BROKEN checksum mismatchmiwi2009-08-221-0/+2
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