aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* - Update to version 1.2.4wjv2001-08-222-2/+2
* - Update port to version 2.2gwjv2001-08-224-223/+34
* Add seqio 1.2.2, a set of C functions which can read/writewjv2001-08-2210-0/+400
* - Update to version 3.6.a2.1 - since the distribution tarball hadn't beenwjv2001-08-225-43/+30
* - Move the (very) long list of manpages from the port Makefile to a separatewjv2001-08-202-123/+240
* Update to 0.95.trevor2001-08-204-27/+30
* Remove a patch turd from the pkg-plistkris2001-08-201-1/+0
* Add treeviewx 0.1.1, a phylogenetic tree viewer.wjv2001-08-179-0/+82
* Add p5-bioperl-devel 0.9.0,wjv2001-08-148-0/+566
* Update to version 1.75wjv2001-08-134-14/+27
* - Properly list run-time dependencies in RUN_DEPENDS in Makefile.wjv2001-08-133-40/+46
* upgrade to 0.26ijliao2001-08-105-32/+30
* Add lamarc 2001.08.06,wjv2001-08-075-0/+42
* Add recombine 1.40, a program to fit population models across sites.wjv2001-08-067-0/+166
* Add fluctuate 1.30, a program to fit population models.wjv2001-08-067-0/+89
* Add coalesce 1.50, a program to fit population models.wjv2001-08-067-0/+73
* Correct my email address.wjv2001-08-061-1/+1
* Add migrate 1.2,wjv2001-08-066-0/+63
* Update maintainer's email address.wjv2001-08-061-1/+1
* - Update port to version 2.0.1wjv2001-08-035-24/+110
* add USE_XLIBlioux2001-07-311-0/+2
* This port require bison to build so add USE_BISON.steve2001-07-261-0/+1
* Remove obsolete pointer to online documentation.wjv2001-07-111-4/+2
* Update package's URL; my email address.wjv2001-07-112-3/+3
* Update Tony Maher's email address.fenner2001-07-111-1/+1
* ${PREFIX}/share/${PORTNAME} --> ${DATADIR}sobomax2001-07-101-2/+2
* Update to version 1.00.a2wjv2001-07-096-8/+46
* Add NOPORTDOCS support to pkg-plistijliao2001-07-0911-1381/+1380
* Update to version 1.3.0wjv2001-07-062-3/+3
* - General clean-up of port.wjv2001-07-055-38/+252
* - Update to version 0.7.1wjv2001-07-044-3/+24
* - Add %%PORTDOCS%% support to pkg-plist.wjv2001-07-042-3/+3
* Add grappa 1.0.2, Genome Rearrangements Analysis and Phylogenywjv2001-07-047-0/+64
* Add %%PORTDOCS%% support to pkg-plist, and tweak Makefile slightly to supportwjv2001-07-042-107/+107
* Add %%PORTDOCS%% suppor to pkg-plist.wjv2001-07-032-12/+12
* Add support for %%PORTDOCS%%.wjv2001-07-031-42/+42
* Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.wjv2001-07-032-2/+2
* Update to version 3.04wjv2001-07-033-5/+5
* Update to version 1.82wjv2001-07-032-3/+2
* Use $FILESDIR rather than hard-coded path.wjv2001-06-291-1/+1
* Updating my email address in my remaining ports.wjv2001-06-273-3/+3
* Embarrassingly long overdue update to 0.7.0, including optional support forwjv2001-06-263-66/+300
* Update to version 2001.04.03; add installation of some documentation.wjv2001-06-205-30/+86
* Update to 1.00.a1; change MAINTAINER to my new address.wjv2001-06-156-124/+691
* Update to 1.13.3; remove bogus file.wjv2001-06-154-71/+9
* - Update to version 1.2.6akevlo2001-06-124-8/+9
* Distfile was moved and renamed.markp2001-06-112-3/+3
* Use proper POSIX syntax for `chown'.obrien2001-06-011-1/+1
* Update to version 1.13.1kevlo2001-05-305-42/+240
* math/numpy was renamed to math/py-numeric.sobomax2001-05-291-1/+1
* upgrade to 4.3.2ijliao2001-05-2714-458/+389
* Update the EMBOSS suite (biology/emboss) to version 1.12.0jeh2001-05-073-138/+25
* Updata biology/fasta3 to version 33.t08.d4jeh2001-05-073-8/+8
* Update distfile checksum (PORTREVISION bumped)olgeni2001-04-205-37/+14
* activate IGNOREFILES.sf2001-04-141-0/+3
* Ignore checksum. The distfile changes day by day.sf2001-04-131-1/+1
* This port require X libraries to build/run.steve2001-04-111-0/+1
* Overhaul QT/KDE support:will2001-04-031-2/+1
* update to 3.03mharo2001-04-024-27/+5
* updated port biology/phylip from vers 3.5 to 3.6mharo2001-04-025-94/+110
* - Update MASTER_SITES and WWW: linekevlo2001-03-314-32/+21
* Update to 33.t08.d3.sobomax2001-03-223-4/+3
* - Upgrade to version 1.70kevlo2001-03-135-18/+41
* Upgrade to 0.4.kuriyama2001-03-134-12/+12
* o update to 2.7.2.sf2001-03-132-5/+5
* pass maintainership to ports@.sf2001-03-131-1/+1
* Update to lastest versionkevlo2001-03-122-2/+3
* Update the EMBOSS suite to v1.11.0nbm2001-03-123-7/+12
* - A small bugfix lead to a rerelease without a version number change.nbm2001-03-122-1/+2
* Update to 0.85.trevor2001-03-122-2/+2
* Force -O0 on the Alpha.trevor2001-03-121-1/+7
* fix WWW:sf2001-03-091-1/+1
* update to 33.t08.d2.sf2001-03-082-2/+2
* gd.2, not gd.1ijliao2001-03-051-1/+1
* Change MASTER_SITE and FTP/WWW lines: caos.kun.nl is cmbi.kun.nl now.roam2001-03-052-3/+3
* Remove do-configure section, use PERL_CONFIGURE now.vanilla2001-03-011-1/+0
* Update to version 1.10.1kevlo2001-02-283-8/+7
* reimport biology/genpakijliao2001-02-288-0/+164
* module name conflict with print/gp, so remove it and I'll reimport it againijliao2001-02-288-163/+0
* add gpijliao2001-02-288-0/+163
* Update to version 1.10.0kevlo2001-02-205-24/+51
* The author (at my request) has gone back to a more FreeBSD-friendlytrevor2001-02-202-2/+1
* Update to 0.84.trevor2001-02-193-15/+14
* Update to version 2001-02-06jeh2001-02-192-2/+2
* Chase graphics/gd's shlib version bump.knu2001-02-121-1/+2
* - New port: biology/fasta3, which comprises the FASTA3 suite of DNA andjeh2001-02-129-0/+204
* New port: biology/fasta, the FASTA2 suite of DNA and protein sequencejeh2001-02-128-0/+151
* add gaussian98, an ab-initio molecular orbital calculation program.sf2001-02-1112-0/+822
* Update to 0.84a. Generate the plist.trevor2001-02-093-8/+10
* - Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1kevlo2001-01-2910-77/+118
* update from 3.7 to 3.8ijliao2001-01-2518-167/+706
* Upgrade to version 1.9.0kevlo2001-01-246-13/+47
* Massive style enforcement - use ^I instead of spaces for variables identation.sobomax2001-01-171-2/+2
* Clean up inefficient perl invocations; use multiple REs in the same call.will2001-01-081-2/+2
* Update to 1.2.6kevlo2000-12-234-7/+25
* Remove trailing period and package name from the pkg-comment.demon2000-12-191-1/+1
* Update to version 5.79.steve2000-12-113-26/+42
* Update distfiles' checksums after the distfiles have been rerolled yetroam2000-12-042-4/+5
* Distfile tarballs were rerolled without notice due to a minor bug.roam2000-12-011-4/+4
* - Update port biology/emboss from 1.7.0 to 1.8.0jeh2000-11-284-17/+124
* Make nolonger support :U. Fix to compensate for that.jeh2000-11-191-3/+6
* They made changes to the "blast" program.jeh2000-11-152-2/+3
* - This is a fairly extensive rework of this port.jeh2000-11-133-0/+56
* - This is a fairly extensive rework of this port.jeh2000-11-134-5/+150
* Change motif to a normal dependency. REQUIRES_MOTIF is now calledasami2000-11-081-1/+1
* Yes. They did re-roll this version, it is legit.jeh2000-11-032-2/+2
* Updated to new version. That is the pits, the day after it becomesjeh2000-11-024-4/+3
* Make portlint happy, remove a spacejeh2000-11-011-1/+1
* Update to version 1.7.0jeh2000-11-013-2/+11
* File missing in pkg-plistjeh2000-10-301-0/+1
* New Port: biology/ncbi-toolkitjeh2000-10-2911-0/+376
* Update biology/sim4 to 2000.10.19jeh2000-10-263-5/+7
* gmake is neededjeh2000-10-241-0/+1
* Update to version 0.6.2jeh2000-10-133-174/+132
* A file was added to distfile and then repackaged with the same name.jeh2000-10-133-2/+5
* Initial import of fastDNAml Version 1.2.2jeh2000-10-126-0/+93
* Missing " in post-patch targetjeh2000-10-111-1/+1
* PR 21608 was not processed as intented.jeh2000-10-112-21/+22
* Initial import of biology/biojavajeh2000-10-106-0/+661
* - Update to 1.6.0kevlo2000-10-103-363/+372
* - Update biology/p5-AcePerl from 1.62 to 1.67kevlo2000-10-106-61/+88
* Initiail version of nab (4.2)jeh2000-10-1017-0/+666
* This is nab (nucleic acid builder), a language for macromoleculesjeh2000-10-101-0/+1
* - Fix MASTER_SITES/DISTNAMEjeh2000-10-103-20/+19
* The last commit changes the ports and therefore need a PORTREVISION bumpjeh2000-10-102-0/+2
* Support PREFIX properlyjeh2000-10-102-1/+5
* - Fix MASTER_SITESjeh2000-10-104-18/+36
* Add do-install target to port's Makefile. Remove patch sectiontrevor2000-10-092-10/+5
* Change PKGDIR from pkg/ to . Also fix places where ${PKGDIR} isasami2000-10-081-1/+1
* Rename ${FILESDIR}/patch-* to ${PATCHDIR}/extra-patch-*.asami2000-10-081-2/+2
* Implement USE_GTK, part 1.reg2000-10-053-38/+26
* - Support CC/CFLAGS/PREFIX properlyjeh2000-10-036-8/+127
* Correct and sort PLISTs.reg2000-10-032-6/+6
* Change MAINTAINER for my ports.trevor2000-10-021-1/+1
* Add USE_XLIBkris2000-09-221-0/+1
* respect CXX and CXXFLAGS (Kato Tsuguru)ade2000-09-194-20/+39
* Update to 0.90.d03nbm2000-09-113-132/+152
* Fix checksumkevlo2000-09-091-18/+1
* Don't break package building on Satoshi's cluster. Explicitly dependtg2000-09-081-1/+1
* Upgrade to 1.5.0nbm2000-09-084-66/+113
* Update to emboss 1.4.0.nbm2000-09-074-52/+83
* Update to version 2000.08.24kevlo2000-09-044-7/+23
* USE_LIBTOOL implies GNU_CONFIGURE, so remove redundant GNU_CONFIGURE lines.sobomax2000-08-211-1/+0
* Update to emboss 1.1.0, fixing some style bugs too.nbm2000-08-135-6/+321
* Upgrade to 0.90.d02.will2000-08-062-3/+3
* Fix MASTER_SITESjedgar2000-08-021-1/+1
* Add emboss, the European Molecular Biology Open Software Suitenbm2000-08-016-0/+700
* Add py-biopython, is a collection of Python packages and modules creatednbm2000-07-316-0/+166
* Add BioPerl, a collection of Perl5 mods for bioinformatics/genomicsnbm2000-07-287-0/+259
* Add p5-AcePerl, a perl interface to the ACEDB genome database systemnbm2000-07-289-0/+177
* Add sim4, an implementation of the sim4 algorithm for aligning expressednbm2000-07-277-0/+48
* Add xdrawchem 0.82 - a program for drawing moleculesalex2000-07-197-0/+65
* Activating the chemeq, clustalw, paml, and phylip ports.steve2000-07-101-0/+4
* Adding phylip version 3.5.steve2000-07-105-0/+161
* Add paml version 3.01.steve2000-07-107-0/+89
* Adding clustalw version 1.81.steve2000-07-106-0/+66
* Adding chemeq version 1.10.steve2000-07-105-0/+62
* - Use GTK_CONFIG/GLIB_CONFIG instead of hardcoded gtk12-config/glib12-configsteve2000-07-082-19/+27
* Unbreak by extracting the correct distfilekris2000-07-031-8/+2
* ...local-distfiles... -> MASTER_SITE_LOCALalex2000-06-201-1/+2
* fc is ftn77 now, adjust accordingly.alex2000-06-123-5/+6
* Update to version 1.0.3alex2000-06-114-24/+23
* Clean up this port so that it installs stuff in a more proper locationwill2000-06-093-138/+138
* Update to the latest version as of 5 June.knu2000-06-084-15/+26
* Fix build for 4.0 and later. Make DESCR shorter.will2000-06-085-165/+181
* Update to 3.6.will2000-06-086-114/+145
* Convert to usable F77 binary, especially on 4.0 and newer.will2000-06-084-82/+73
* Fix MD5 checksum. Since I was unable to find an older version of thewill2000-06-051-1/+1
* Fix this port after the recent PORT{NAME,VERSION} changes. portlint(1)steve2000-05-281-2/+4
* Update to version 2000.04.26.steve2000-05-283-5/+3
* Chase the checksum (lots of code changes)kris2000-04-241-1/+1
* WRKSRC-related fixes.asami2000-04-161-0/+1
* update with the new PORTNAME/PORTVERSION variablesmharo2000-04-0915-53/+51
* Remove andy@icc.surw.chel.su as maintainer from his ports..he doesn'tkris2000-03-291-1/+1
* Add virtual category "linux" to Linux apps and support libs/utils.asami2000-02-281-1/+1
* Chase the checksum (minor source changes)kris2000-02-271-1/+1
* update URLsmharo2000-02-241-2/+2
* update WWWmharo2000-02-241-1/+1
* Forgot to remove this linecpiazza2000-02-071-1/+0
* Don't strip things we don't know how to stripcpiazza2000-01-311-1/+1
* fix some pkg/MESSAGE stuffmharo2000-01-302-2/+2
* Update to ver 1.2.2cpiazza2000-01-152-3/+3
* Bump glib12 's share library version to 3,vanilla1999-10-102-10/+2
* f77(1) on the Alpha doesn't grok '-malign-double' so only use it on thesteve1999-09-271-0/+4
* Enforce random pkg/COMMENT rules, including the one that states Emacshoek1999-09-182-2/+2
* Grammar and WWW: fix.hoek1999-09-181-7/+6
* Update to new version.steve1999-09-183-8/+5
* Compile-errortaoka1999-09-102-3/+9
* Compile errortaoka1999-09-091-1/+1
* Added gperiodic and xmolwttaoka1999-09-071-0/+2
* Displays a periodic table of the elements.taoka1999-09-075-0/+58
* This program calculate formula weight and percent of each elements.taoka1999-09-076-0/+82
* Distfile changed on the MASTER_SITE. I have no idea if thiscpiazza1999-08-312-6/+6
* Remove preceeding pkgname from some of the comments having one.hoek1999-08-301-1/+1
* grammar gnithoek1999-08-301-1/+1
* ln -> ${LN}mharo1999-08-282-2/+2
* echo -> ${ECHO} or ${ECHO_MSG} and in some cases, move echo stuffmharo1999-08-281-8/+8
* Updated to 2.7.1taoka1999-08-253-11/+24
* Change Id->FreeBSD.obrien1999-08-2514-14/+14
* Make port depend on linux_base instead of linux_lib.marcel1999-07-211-3/+3
* Fix typos and/or cleanup WWW:.hoek1999-07-174-18/+13
* BROKEN='MD5 checksum error'obrien1999-07-151-1/+3
* Fix port after distfile change.cpiazza1999-07-112-3/+2
* Remove trailing spaces, and any periods that were hidden by them.hoek1999-06-282-2/+2
* As threatened, enforce the "Capital, no period" rule. Ellipses arehoek1999-06-279-9/+9
* Install into ${PREFIX}, not /usr/local.cpiazza1999-06-263-7/+7
* Clean up warnings for -current (g77)cpiazza1999-06-251-7/+9
* Change ${INSTALL} to use -s and -c.cpiazza1999-06-241-45/+45
* Update tinker from version 3.6 to version 3.7cpiazza1999-06-237-310/+289
* Make the psi88 port install into PREFIX instead of a hardcodedcpiazza1999-06-191-4/+14
* The xforms ports is no longer an i386-only port.steve1999-06-091-4/+1
* Fill in a couple of missing WWW references...scrappy1999-06-052-0/+4
* Fix build for -current boxes with egcs' f77 compiler.steve1999-05-242-11/+29
* Allow this port to be built on -current i386 boxes that have egcs' f77steve1999-05-241-2/+11
* This port doesn't build with egcs' f77 compiler.steve1999-05-241-2/+7
* Build this port on an Alpha box instead of trying to use i386 binaries.steve1999-05-241-1/+5
* Fix build for Alpha.steve1999-05-241-1/+1
* Fix build on -current (Alpha) machines.steve1999-05-242-18/+29
* Added WWW: for www-site target in DESCRtaoka1999-05-192-2/+2
* Added deft and ortep3taoka1999-05-191-1/+3
* The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structuretaoka1999-05-197-0/+594
* Density functional molecular orbital calculation.taoka1999-05-197-0/+226
* Fix checksumflathill1999-05-091-1/+1
* Changed MASTER_SITEStaoka1999-05-081-2/+2
* Changed MASTER_SITEStaoka1999-05-081-3/+3
* Add platon and moldentaoka1999-05-071-1/+3
* display molecular orbitals and electron densities in 2D and 3Dtaoka1999-05-077-0/+201
* the one of crystallographic toolstaoka1999-05-076-0/+175
* Be able to use ${PREFIX}taoka1999-05-075-13/+67
* Fixed ${CATEGORIES} (removed misc from it)taoka1999-05-061-2/+2
* Semi-empirical (MNDO, etc.) molecular orbital calculationtaoka1999-05-0611-0/+213
* Plotting wavefunctions (molecular orbitals) in 3Dtaoka1999-05-069-0/+365
* Add mopac and psi88 (Move mopac and psi88 from misc to biology)taoka1999-05-061-1/+3
* Weasal and Wabbits and BIG FOOT.hoek1999-05-036-17/+12
* Upgrade to 2.1.1fenner1999-03-093-8/+16
* Adjust port Makefiles to new EXTRACT_* variable defaults. See log ofasami1999-02-031-1/+3
* Correct the MD5 checksum.vanilla1999-01-311-1/+1
* Added 'ONLY_FOR_ARCHS=i386' to XForms dependent ports.simokawa1999-01-071-1/+4
* Add 'ONLY_FOR_ARCHS=i386' to linux_lib dependent ports.simokawa1999-01-071-1/+3
* Change *_DEPENDS on lang/perl5 to USE_PERL5 so we won't have anyasami1999-01-021-3/+2
* Update MASTER_SITES.billf1998-12-102-4/+6
* Add a comment about setting env var 'FC' to 'g77' if EGCS is to bejkoshy1998-11-181-3/+4
* Activate tinker.jkoshy1998-11-171-1/+2
* New port of the Tinker Molecular modelling program.jkoshy1998-11-1711-0/+725
* Use bsd.port.{pre,post}.mk to move PORTOBJFORMAT to front, or changeasami1998-11-141-6/+8
* Update of MASTER_SITES.billf1998-11-131-2/+2
* Unbreak for ELFjseger1998-11-031-3/+1
* Master site changed, update MD5.jkoshy1998-10-082-3/+3
* Checksum changed again....asami1998-09-281-1/+1
* Remove empty doc dir on deinstall.steve1998-09-271-0/+1
generated by cgit (git 2.34.1) at 2024-11-16 08:46:37 +0800