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* Port update (maintainer): biology/wiseedwin2003-09-242-2/+2
* Make portlint(1) happy by changing strip to ${STRIP_CMD}osa2003-09-242-2/+2
* Update port: biology/gperiodic to 2.0.6edwin2003-09-083-4/+5
* new port:biology/lsysexpedwin2003-09-035-0/+71
* Silent changes to the port distfile which *not* have significantmaho2003-09-021-2/+2
* - Add an end-of-string to each line of the inputkrion2003-08-281-7/+7
* Update to 0.5.2.knu2003-08-233-2/+13
* Fix build on python2.3perky2003-08-201-1/+6
* o Main modificationnork2003-08-192-9/+7
* As announced on May 6, remove the broken p5-bioperl-devel port.kris2003-08-088-686/+0
* BROKEN: Checksum mismatchkris2003-08-071-0/+2
* Fix python version detection routines to cope with python 2.3'sperky2003-08-021-1/+1
* Somehow pkg-plist is removed...maho2003-08-011-0/+128
* a) Update to 1.7.3maho2003-08-013-84/+18
* Add USE_XLIB=yes to compilemaho2003-07-311-0/+1
* Update to 0.5.1.knu2003-07-292-2/+2
* A new port garlic, free molecular viewer and editor, free molecularmaho2003-07-286-0/+399
* - Update to version 2.0.5krion2003-07-285-41/+25
* Some clean-up.maho2003-07-261-17/+14
* Duplicated the `pre-extract:' and `post-build:'maho2003-07-261-9/+0
* a) Some corrupts with Makefile and pkg-plist.maho2003-07-252-12/+26
* a) Forgot to update distinfo 52498maho2003-07-255-33/+69
* Update to 0.90maho2003-07-244-309/+328
* enhancement, build and install the opengl viewer, moldenogl.maho2003-07-194-74/+64
* honor CFLAGS and FFLAGSmaho2003-07-192-3/+4
* Maintainer update of biology/tinker port to version 4.0.maho2003-07-195-20/+42
* Add semi-colons(;) after declare statements that go in the povray scene fileleeym2003-07-143-7/+168
* o Change library name from libgd to libgd1.nork2003-07-122-3/+4
* s/NOPORTSDOCS/NOPORTDOCS/ [1]osa2003-07-112-6/+6
* update biology/nab: 4.4 -> 4.5.1daichi2003-07-0812-403/+393
* Update to 0.5.0.knu2003-06-263-5/+25
* update ports/biology/act to latest release (v2)daichi2003-06-233-988/+1603
* - update to 1.83erwin2003-06-183-3/+4
* Move inclusion of bsd.port.pre.mk later in the file for conditional BROKENkris2003-06-051-5/+5
* Assign MAINTAINER to ports@FreeBSD.org.adamw2003-06-051-1/+1
* Upgrade to 2003.01.21. Appears to only add some more file export/printhoek2003-05-227-40/+49
* Add back the WWW which was inexplicably deleted in a previoushoek2003-05-221-6/+11
* - fix build under gcc 3.3petef2003-05-191-1/+8
* Back out previous commit, the port was fixed a few days ago.kris2003-05-191-7/+1
* BROKEN on 5.1: bad C++kris2003-05-182-2/+14
* - Update to latest release.mich2003-05-145-62/+3
* BROKEN: Broken pkg-plistkris2003-05-071-0/+2
* Update to 2003.04.21arved2003-05-058-79/+59
* - unbreak on 4.x: add dependency on gdkpixbuf, fix Makefiles to compile withpetef2003-05-043-44/+30
* Updated to 0.8.6.maho2003-05-035-362/+283
* Update to 20030425 snapshotlioux2003-04-263-6/+6
* Remove USE_GNOMENG.marcus2003-04-183-3/+0
* Update the biology/tinker Makefile so it builds on -currentedwin2003-03-301-1/+6
* * Fix build with GCC3 (-CURRENT).naddy2003-03-255-24/+89
* Clear moonlight beckons.ade2003-03-0728-14/+14
* Retire comment file.trevor2003-03-012-1/+1
* Update to 20030227 snapshotlioux2003-02-282-2/+2
* De-pkg-commentlioux2003-02-242-1/+1
* De-pkg-comment.knu2003-02-2172-36/+36
* De-pkg-comment.knu2003-02-218-4/+4
* Fix install and packaging list.naddy2003-02-183-59/+67
* De-pkg-comment.knu2003-02-182-1/+1
* Update to 1.83.naddy2003-02-1613-182/+179
* * Update to 3.13.naddy2003-02-155-20/+7
* Add dependency on security/p5-Digest-MD5edwin2003-02-131-0/+3
* Update to version 0.5.1.naddy2003-02-128-68/+4
* Remove gaussian98kris2003-02-051-1/+0
* Delete biology/gaussian98. Maintain is too hard andmaho2003-02-0111-820/+0
* Update to 0.4.0.knu2003-01-293-14/+26
* add '-f' argument to rm so that the script always work even if alioux2003-01-241-1/+1
* New Port: biology/actedwin2003-01-166-0/+1031
* Add missing filekris2003-01-141-0/+1
* Add some missing fileskris2003-01-141-0/+4
* Update to 3.8arved2003-01-083-22/+6
* update biology/babel to properly output mm3 files.edwin2003-01-032-1/+93
* upgrade to 3.7ijliao2003-01-025-193/+255
* add missing includeijliao2002-12-291-0/+10
* fix build on -currentijliao2002-12-225-0/+53
* Fix typo: distribfold.org -> distributedfolding.orglioux2002-12-202-2/+2
* o Update to 20021105 snapshotlioux2002-12-192-4/+9
* Mark BROKEN due to "Unknown problem"lioux2002-11-251-0/+2
* unbroke by upgrade to 20021018ijliao2002-11-208-30/+72
* add treepuzzle 5.1ijliao2002-11-206-0/+41
* 1. add a missing dependency on png and unbreak.maho2002-11-201-2/+3
* o Rollback PORTCOMMENT modifications while this feature's implementationlioux2002-11-116-6/+3
* Update WWWarved2002-11-081-1/+1
* Updated to fix problems as stated in PR ports/42915edwin2002-11-073-2/+42
* Fix PORTCOMMENTs that were killing INDEX builds.adamw2002-11-072-2/+1
* Use PORTCOMMENT in the Makefile, and whack the pkg-comment.adamw2002-11-078-4/+8
* Modify replace RE to match syntax of sed now ("\)" -> ")"edwin2002-11-051-8/+8
* PERL -> REINPLACEedwin2002-11-044-10/+15
* PERL -> REINPLACEedwin2002-11-041-1/+2
* PERL -> REINPLACEedwin2002-11-042-2/+4
* Port needs perl to build.edwin2002-11-041-0/+2
* Make biology/avida building on -current againedwin2002-11-042-3/+2
* Add another entry for MASTER_SITES and unbreak with latest version of bisonpat2002-10-303-1/+25
* Update CATEGORIES as per ports/44331.tom2002-10-211-2/+2
* o Update to snapshot 20021015lioux2002-10-202-4/+17
* Fix dependency on wxgtkkris2002-10-191-1/+1
* CC, CXX, CFLAGS, PTHREAD_CFLAGS and PTHREAD_LIBS may contain `/' inknu2002-10-101-1/+1
* Connect distribfold to build after moving it from misc categorylioux2002-10-071-0/+1
* o New port distribfold version 0.1: distribfold.org distributed proteinlioux2002-10-0711-0/+374
* Use RUBY_MOD*.knu2002-10-072-31/+31
* - Unbreak fetching of distfiles. (Needs update as soon as freeze is over.)wjv2002-09-272-9/+7
* add forgotten "USE_REINPLACE=yes"ijliao2002-09-211-0/+1
* upgrade to 20020426ijliao2002-09-216-22/+16
* BROKEN: Does not fetchkris2002-09-211-0/+2
* BROKEN: Does not buildkris2002-09-191-0/+2
* add primer3 0.9ijliao2002-09-176-0/+437
* Flip is used to find/translate orfs.dinoex2002-09-106-0/+33
* "Wise2 is package that is focused on comparing DNA sequences atdinoex2002-09-107-0/+185
* Chase new name of wxgtk shared library.sobomax2002-09-091-1/+1
* Remove USE_NEWGCC, which is no longer supported or required.kris2002-08-311-1/+0
* Deploy USE_GNOMENG infrastructurelioux2002-08-302-2/+4
* o Fix examples directory path which is changed in last revision.perky2002-08-261-1/+5
* o Fix RUN_DEPENDS path (PMW -> Pmw)perky2002-08-252-4/+33
* Prefer <limits.h> over <values.h> as the latter has been removed fromkris2002-08-234-0/+44
* o Remove redundant dependency on py-tkinter.perky2002-08-221-1/+1
* Add a dependecy to x11-toolkits/pmwperky2002-08-221-1/+2
* New port L-Breeder version 1.0: Allows you to display and breedlioux2002-08-219-0/+96
* - Support CXXFLAGS properly.naddy2002-08-183-7/+22
* Update to version 3.6.a3.naddy2002-08-143-22/+7
* Add pymol 0.82, Free and Open-Source molecular modeling system.perky2002-08-138-0/+715
* Update to 0.3.9.knu2002-08-033-2/+3
* add libgenome 0.5.0ijliao2002-07-306-0/+381
* upgrade to 4.4ijliao2002-07-168-16/+97
* Use $PYNUMERIC in the dependencies.tg2002-07-151-2/+2
* - Add patch that will, for -CURRENT only, change: -pthread -> -lc_rwjv2002-07-112-0/+23
* Update to 0.3.8.knu2002-07-083-6/+29
* - Update to version 2.4.1wjv2002-07-054-111/+183
* Bump XForms lib. version.mikeh2002-07-041-1/+1
* Unbreak this port:glewis2002-06-162-586/+585
* Correct MASTER_SITES.petef2002-06-081-1/+1
* Note distribution term.sada2002-05-271-8/+6
* Back my last commit out.sada2002-05-232-2/+2
* distfile has silently changed,sada2002-05-182-1/+2
* BROKEN: Checksum is incorrectkris2002-05-181-0/+2
* BROKEN: incorrect checksumskris2002-05-171-0/+2
* Update to sim4-2002.03.03 to unbreak build.kris2002-05-052-3/+3
* upgrade to V110-1ijliao2002-04-212-4/+3
* add avida 1.6.0ijliao2002-04-2011-0/+146
* Update to 0.3.6.knu2002-04-112-4/+3
* Swiss-PdbViewer is an application that provides a user friendly interfacedinoex2002-04-038-0/+388
* Remove #include <malloc.h>kris2002-03-311-0/+4
* change master siteijliao2002-03-293-10/+32
* Respect CFLAGS/CC.petef2002-03-291-0/+21
* Add crimap 2.4, a tool for the creation of multilocus linkage maps.wjv2002-03-276-0/+59
* Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.wjv2002-03-277-0/+102
* - Add a new patchwjv2002-03-272-1/+11
* Add USE_SUBMAKE, where it might be necessary.sobomax2002-03-251-0/+1
* BROKEN: Does not buildkris2002-03-251-0/+2
* - Fix certain mistakes in FreeBSD patcheswjv2002-03-228-70/+320
* Update to 0.3.5.knu2002-03-133-3/+13
* Fix WWW.dannyboy2002-03-091-1/+1
* Update to 2001.12.20pat2002-02-226-18/+88
* Pass maintainership to submitter and add a backup master site.petef2002-02-201-2/+3
* - Install documentationpat2002-02-134-6/+19
* Use ${ECHO_CMD} instead of ${ECHO} where you mean the echo command;knu2002-01-291-4/+4
* Add t_coffee 1.37, a multiple DNA or protein sequence alignment package.wjv2002-01-259-0/+438
* - Update to version of 2001-12-30wjv2002-01-252-2/+2
* - Update to version 1.82wjv2002-01-254-13/+28
* - Update to version 0.7.2, somewhat overdue. :-)wjv2002-01-252-27/+53
* o update to 3.7.sf2002-01-242-34/+7
* o update to 0.7.sf2002-01-242-2/+2
* update to 1.3.3.sf2002-01-232-2/+2
* - Update to version 1.00a4wjv2002-01-223-10/+261
* Update to 0.99.7. Use new DATADIR macro. Install documentation,trevor2002-01-204-24/+55
* Upgrade tinker to the latest revisionijliao2002-01-195-64/+101
* - Update to version 2.2.0wjv2002-01-183-15/+335
* Update to 0.2.petef2001-12-294-19/+8
* Initial import of artemis 4.0kevlo2001-12-226-0/+1529
* Update to 0.3.3.knu2001-12-223-2/+3
* Add gff2ps 0.97b, converts gff-formated genomic data-sets topetef2001-12-196-0/+42
* Add dna-qc 1993.07.26, a quality control algorithm for DNApetef2001-12-197-0/+94
* Update to version 2001.10.12.steve2001-12-172-2/+2
* fix pkg-plistijliao2001-12-091-0/+1
* * Replace pkg-message about setting BABEL_DIR with a wrapper scriptnaddy2001-12-028-26/+55
* - update to 1.3.2petef2001-11-292-7/+4
* Update to 0.3.2.knu2001-11-283-4/+21
* Style police: WWW tags should either end in a file/script or TRAILING /; Fix ...lioux2001-11-211-1/+1
* Style police: WWW tags should either end in a file/script or TRAILING /; Fix ...lioux2001-11-212-2/+2
* chase checksum for repacked distfile almost an year ago.sf2001-11-063-2/+3
* Add ruby-bio (BioRuby), an integrated environment for Bioinformaticsknu2001-10-246-0/+91
* update WWW and master siteijliao2001-10-222-2/+10
* Remove a redundant trailing space.knu2001-10-211-1/+1
* - Update the included (optional) Biopython-CORBA pacakge to version 0.3.0wjv2001-10-025-263/+210
* Add nclever 4.0, a character-based version of NCBI's Entrez program.wjv2001-09-268-0/+105
* - Add NO_LATEST_LINK, which should've been there in the first place. :-(wjv2001-09-201-0/+1
* - Add installation of include fileswjv2001-09-194-134/+445
* style fix: un"echo" commandslioux2001-09-131-40/+40
* Update to 3.9lioux2001-09-1312-116/+161
* Bump png majorache2001-09-111-1/+1
* Fix a buglet with the use of XFREE86_VERSION without includingtobez2001-09-071-1/+3
* Make biology/rasmol work at all color depths.tobez2001-09-074-8/+91
* - Update to version 1.00.a3wjv2001-09-064-105/+167
* - Update to version 3.1wjv2001-08-294-6/+18
* - Update to version 1.0.3wjv2001-08-292-3/+3
* - Update to version 1.2.4wjv2001-08-222-2/+2
* - Update port to version 2.2gwjv2001-08-224-223/+34
* Add seqio 1.2.2, a set of C functions which can read/writewjv2001-08-2210-0/+400
* - Update to version 3.6.a2.1 - since the distribution tarball hadn't beenwjv2001-08-225-43/+30
* - Move the (very) long list of manpages from the port Makefile to a separatewjv2001-08-202-123/+240
* Update to 0.95.trevor2001-08-204-27/+30
* Remove a patch turd from the pkg-plistkris2001-08-201-1/+0
* Add treeviewx 0.1.1, a phylogenetic tree viewer.wjv2001-08-179-0/+82
* Add p5-bioperl-devel 0.9.0,wjv2001-08-148-0/+566
* Update to version 1.75wjv2001-08-134-14/+27
* - Properly list run-time dependencies in RUN_DEPENDS in Makefile.wjv2001-08-133-40/+46
* upgrade to 0.26ijliao2001-08-105-32/+30
* Add lamarc 2001.08.06,wjv2001-08-075-0/+42
* Add recombine 1.40, a program to fit population models across sites.wjv2001-08-067-0/+166
* Add fluctuate 1.30, a program to fit population models.wjv2001-08-067-0/+89
* Add coalesce 1.50, a program to fit population models.wjv2001-08-067-0/+73
* Correct my email address.wjv2001-08-061-1/+1
* Add migrate 1.2,wjv2001-08-066-0/+63
* Update maintainer's email address.wjv2001-08-061-1/+1
* - Update port to version 2.0.1wjv2001-08-035-24/+110
* add USE_XLIBlioux2001-07-311-0/+2
* This port require bison to build so add USE_BISON.steve2001-07-261-0/+1
* Remove obsolete pointer to online documentation.wjv2001-07-111-4/+2
* Update package's URL; my email address.wjv2001-07-112-3/+3
* Update Tony Maher's email address.fenner2001-07-111-1/+1
* ${PREFIX}/share/${PORTNAME} --> ${DATADIR}sobomax2001-07-101-2/+2
* Update to version 1.00.a2wjv2001-07-096-8/+46
* Add NOPORTDOCS support to pkg-plistijliao2001-07-0911-1381/+1380
* Update to version 1.3.0wjv2001-07-062-3/+3
* - General clean-up of port.wjv2001-07-055-38/+252
* - Update to version 0.7.1wjv2001-07-044-3/+24
* - Add %%PORTDOCS%% support to pkg-plist.wjv2001-07-042-3/+3
* Add grappa 1.0.2, Genome Rearrangements Analysis and Phylogenywjv2001-07-047-0/+64
* Add %%PORTDOCS%% support to pkg-plist, and tweak Makefile slightly to supportwjv2001-07-042-107/+107
* Add %%PORTDOCS%% suppor to pkg-plist.wjv2001-07-032-12/+12
* Add support for %%PORTDOCS%%.wjv2001-07-031-42/+42
* Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.wjv2001-07-032-2/+2
* Update to version 3.04wjv2001-07-033-5/+5
* Update to version 1.82wjv2001-07-032-3/+2
* Use $FILESDIR rather than hard-coded path.wjv2001-06-291-1/+1
* Updating my email address in my remaining ports.wjv2001-06-273-3/+3
* Embarrassingly long overdue update to 0.7.0, including optional support forwjv2001-06-263-66/+300
* Update to version 2001.04.03; add installation of some documentation.wjv2001-06-205-30/+86
* Update to 1.00.a1; change MAINTAINER to my new address.wjv2001-06-156-124/+691
* Update to 1.13.3; remove bogus file.wjv2001-06-154-71/+9
* - Update to version 1.2.6akevlo2001-06-124-8/+9
* Distfile was moved and renamed.markp2001-06-112-3/+3
* Use proper POSIX syntax for `chown'.obrien2001-06-011-1/+1
* Update to version 1.13.1kevlo2001-05-305-42/+240
* math/numpy was renamed to math/py-numeric.sobomax2001-05-291-1/+1
* upgrade to 4.3.2ijliao2001-05-2714-458/+389
* Update the EMBOSS suite (biology/emboss) to version 1.12.0jeh2001-05-073-138/+25
* Updata biology/fasta3 to version 33.t08.d4jeh2001-05-073-8/+8
* Update distfile checksum (PORTREVISION bumped)olgeni2001-04-205-37/+14
* activate IGNOREFILES.sf2001-04-141-0/+3
* Ignore checksum. The distfile changes day by day.sf2001-04-131-1/+1
* This port require X libraries to build/run.steve2001-04-111-0/+1
* Overhaul QT/KDE support:will2001-04-031-2/+1
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