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* Added WWW: for www-site target in DESCRtaoka1999-05-192-2/+2
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* Added deft and ortep3taoka1999-05-191-1/+3
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* The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structuretaoka1999-05-197-0/+594
| | | | | PR: 11649 Submitted by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
* Density functional molecular orbital calculation.taoka1999-05-197-0/+226
| | | | | PR: 11647 Submitted by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
* Fix checksumflathill1999-05-091-1/+1
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* Changed MASTER_SITEStaoka1999-05-081-2/+2
| | | | | PR: 11572 Submitted by: maintainer
* Changed MASTER_SITEStaoka1999-05-081-3/+3
| | | | | PR: 11571 Submitted by: maintainer
* Add platon and moldentaoka1999-05-071-1/+3
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* display molecular orbitals and electron densities in 2D and 3Dtaoka1999-05-077-0/+201
| | | | Submitted by: rmiya@cc.hirosaki-u.ac.jp (Ryo MIYAMOTO)
* the one of crystallographic toolstaoka1999-05-076-0/+175
| | | | Submitted by: rmiya@cc.hirosaki-u.ac.jp (Ryo MIYAMOTO)
* Be able to use ${PREFIX}taoka1999-05-075-13/+67
| | | | Submitted by: maintainer
* Fixed ${CATEGORIES} (removed misc from it)taoka1999-05-061-2/+2
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* Semi-empirical (MNDO, etc.) molecular orbital calculationtaoka1999-05-0611-0/+213
| | | | | PR: ports/8863 Submitted by: Ryo MIYAMOTO rmiya@cc.hirosaki-u.ac.jp
* Plotting wavefunctions (molecular orbitals) in 3Dtaoka1999-05-069-0/+365
| | | | | PR: ports/8696 Submitted by: Ryo MIYAMOTO rmiya@cc.hirosaki-u.ac.jp
* Add mopac and psi88 (Move mopac and psi88 from misc to biology)taoka1999-05-061-1/+3
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* Weasal and Wabbits and BIG FOOT.hoek1999-05-036-17/+12
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* Upgrade to 2.1.1fenner1999-03-093-8/+16
| | | | | PR: ports/10228 Submitted by: Michael Haro mharo@area51.fremont.ca.us
* Adjust port Makefiles to new EXTRACT_* variable defaults. See log ofasami1999-02-031-1/+3
| | | | | | | | | | | | | | | | | | | bsd.port.mk rev. 1.304 for details on the change. The fix here is one of the following. (1) Define USE_BZIP2 instead of BUILD_DEPENDS on bzip2 and redefining EXTRACT_* commands. (2) Change ${EXTRACT_CMD} to ${TAR} when the command is obviously calling the "tar" command (i.e., arguments like "-xzf" are spelled out). (3) If ${EXTRACT_CMD} is called directly with ${EXTRACT_BEFORE_ARGS}, add ${EXTRACT_AFTER_ARGS} to the command line as well. (4) If any of EXTRACT_CMD, EXTRACT_BEFORE_ARGS or EXTRACT_AFTER_ARGS is set, define the other two too.
* Correct the MD5 checksum.vanilla1999-01-311-1/+1
| | | | Submitted by: maintainer
* Added 'ONLY_FOR_ARCHS=i386' to XForms dependent ports.simokawa1999-01-071-1/+4
| | | | XForms has not been available for FreeBSD/alpha yet.
* Add 'ONLY_FOR_ARCHS=i386' to linux_lib dependent ports.simokawa1999-01-071-1/+3
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* Change *_DEPENDS on lang/perl5 to USE_PERL5 so we won't have anyasami1999-01-021-3/+2
| | | | | | | dependencies to perl5 in -current. This might cause some unwanted perl5 installations on -stable (if it was originally RUN_DEPENDS, perl5 will now be installed during build too, etc.), but its lifetime is limited anyway.
* Update MASTER_SITES.billf1998-12-102-4/+6
| | | | Thanks To: Fenner's portsurvey and ftpsearch.lycos.com
* Add a comment about setting env var 'FC' to 'g77' if EGCS is to bejkoshy1998-11-181-3/+4
| | | | used for building.
* Activate tinker.jkoshy1998-11-171-1/+2
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* New port of the Tinker Molecular modelling program.jkoshy1998-11-1711-0/+725
| | | | | | PR: 8690 Reviewed by: jkoshy Submitted by: Glenn Johnson <gljohns@bellsouth.net>
* Use bsd.port.{pre,post}.mk to move PORTOBJFORMAT to front, or changeasami1998-11-141-6/+8
| | | | | shell loops to make loops. Use EXTRA_PKG_FLAGS to add install scripts instead of adding it to PKG_FLAGS after bsd.port.mk.
* Update of MASTER_SITES.billf1998-11-131-2/+2
| | | | | PR: ports/8600 Submitted by: frankch@waru.life.nthu.edu.tw
* Unbreak for ELFjseger1998-11-031-3/+1
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* Master site changed, update MD5.jkoshy1998-10-082-3/+3
| | | | | PR: 8200 Submitted by: frankch@waru.life.nthu.edu.tw (maintainer)
* Checksum changed again....asami1998-09-281-1/+1
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* Remove empty doc dir on deinstall.steve1998-09-271-0/+1
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* Don't strip the binary when building ELF.steve1998-09-271-1/+5
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* Checksum of seaview.tar changed.steve1998-09-271-1/+1
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* Mark broken for ELF because of xforms port.steve1998-09-271-2/+4
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* Take the manpages out of pkg/PLIST and put them in MAN1.steve1998-09-162-2/+3
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* Unbreak by making a new checksum and fixing the makefile to find a new sourcejseger1998-08-213-6/+4
| | | | file.
* BROKEN:jseger1998-08-211-1/+3
| | | | | # make checksum >> Checksum mismatch for seaview.tar.
* Remove manpages from pkg/PLISTobrien1998-08-141-8/+0
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* Fix up dependencies for ports that moved into the x11-toolkits category.asami1998-08-081-2/+2
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* Rename all USE_X11 to USE_X_PREFIX. Requires 1.279 (3.0-current) orasami1998-08-051-2/+2
| | | | | 1.227.2.41 (2.2-stable) of bsd.port.mk for this to be interpreted correctly.
* Making x11 category more useful project part 1: take out "x11" ofasami1998-07-282-4/+4
| | | | | | ports that are mere users of X. Partial list submitted by: Josh Gilliam <josh@quick.net>
* Another batch of "Add homepage." for benchmarks through converters.hoek1998-07-251-0/+2
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* Turn on hmmer.steve1998-07-131-1/+2
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* Initial import of hmmer version 2.0.steve1998-07-136-0/+86
| | | | | | | Profile hidden Markov models for biological sequence analysis. PR: 7120 Submitted by: Matthew Jason Euclid Barnhart <barnhart@sequencer.wustl.edu>
* Update to 2.6b2.1.steve1998-05-243-7/+7
| | | | | PR: 6673 Submitted by: maintainer
* mkdir -> ${MKDIR}. This also has the side-effect of making thisasami1998-03-311-2/+2
| | | | port reinstall-friendly.
* Add DIST_SUBDIR, the name "periodic.tab" is kinda generic. Speaking of which,asami1998-03-172-7/+8
| | | | its checksum was different so fix it too.
* Add linux_lib DEPEND lines.jseger1998-03-171-1/+4
| | | | | PR: 5816 Submitted by: frankch@waru.life.nthu.edu.tw
* Activate povchem.vanilla1998-03-161-1/+2
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* Povchem is a tool to generate POV file from a PDB(Proteinvanilla1998-03-167-0/+78
| | | | | | | DataBank) entry. One can adjust many parameters for a high quality molecular graphic. PR: ports/6008 Submitted by: Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw>
* Activate kinemagejseger1998-01-301-1/+2
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* Import of ports/biology/kinemage 4.2jseger1998-01-305-0/+37
| | | | | | | | Kinemage is a molecular visualization program. It is very suitable for educational usage. PR: ports/5217 Submitted by: frankch@waru.life.nthu.edu.tw
* Typo (LIB_DEPEND -> LIB_DEPENDS).asami1997-12-261-2/+2
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* Move pkg/INSTALL to pkg/MESSAGE, add another patch from maintainer.vanilla1997-12-243-6/+14
| | | | | | PR: ports/5361 Reviewed by: asami Submitted by: maintainer
* Activate seaview.vanilla1997-12-221-1/+2
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* Seaview is a multiple DNA sequence alignment editor.vanilla1997-12-226-0/+72
| | | | | | | It is capable of align DNA sequences from various organisms and assign their position in the phylogenic tree. PR: ports/5229 Submitted by: Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw>
* Activate babel.vanilla1997-12-221-1/+2
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* This is a port of a molecular file format converter, babel.vanilla1997-12-227-0/+95
| | | | | | | Babel is developed by Dolata Group, Department of Chemistry, University of Arizona and Ohio State University. PR: ports/5215 Submitted by: Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw>
* Activate rasmol.vanilla1997-12-161-2/+2
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* rasmol is a biological molecule visualization program.vanilla1997-12-166-0/+46
| | | | | PR: ports/5214 Submitted by: frankch@waru.life.nthu.edu.tw
* The new ports category "biology" starts here today. No Darwinasami1997-12-132-0/+7
jokes please!
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