aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* - Mark MAKE_JOBS_UNSAFEpav2009-11-212-0/+2
* - Update to 1.992wen2009-11-202-5/+5
* - broken checksum mismatchmiwi2009-11-191-0/+2
* - Mark MAKE_JOBS_UNSAFEpav2009-11-191-0/+1
* pyfasta is a python module for fast, memory-efficient, pythonicwen2009-11-185-0/+52
* - Update to 21.1.1wen2009-11-184-29/+17
* Velvet is a de novo genomic assembler specially designed for short readamdmi32009-11-077-0/+244
* - Annotate that 8.x no longer needs libmap hackpav2009-10-011-1/+1
* - Update to 4.0.0wen2009-09-234-13/+23
* Update to Crux 1.2.0.jasone2009-09-203-26/+29
* UNBREAK: Probably was a temporary failure, checksums are ok now.garga2009-09-161-2/+0
* -Update to 3.69miwi2009-09-162-14/+10
* Bump PORTREVISION for everything that sets USE_FORTRAN=yes which nowgerald2009-09-136-5/+6
* - Update to 1.14jadawin2009-09-082-4/+4
* - Update to 138038miwi2009-09-054-444/+152
* - Update to 0.982miwi2009-08-292-5/+5
* Bio::SCF module allows you to read and update (in a restrictedmiwi2009-08-295-0/+46
* Io_lib is a library of file reading and writing code to provide amiwi2009-08-295-0/+107
* - Update to 3.21.araujo2009-08-282-5/+5
* - Update to 1.12miwi2009-08-282-5/+4
* Update to 35.4.9makc2009-08-232-4/+4
* Bio::NEXUS package provides an object-oriented, Perl-basedmiwi2009-08-235-0/+91
* - BROKEN checksum mismatchmiwi2009-08-221-0/+2
* - Switch SourceForge ports to the new File Release System: categories startin...amdmi32009-08-225-8/+5
* - Fix fetchmiwi2009-08-171-1/+1
* - Update MASTER_SITESmiwi2009-08-142-4/+2
* - Update to 4.3miwi2009-08-142-6/+6
* Fix PKGORIGINerwin2009-08-081-1/+1
* - Relax check on bioperl version; people keep forgetting to update this checkpav2009-08-031-1/+1
* - Unbreak fetchpav2009-08-031-1/+1
* -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.mezz2009-08-032-2/+2
* - bump all port that indirectly depends on libjpeg and have not yet been bump...dinoex2009-07-3114-7/+14
* Utilize %%SITE_PERL%% and %%PERL_ARCH%% in pkg-plistspgollucci2009-07-311-3/+3
* - lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checkspgollucci2009-07-232-14/+1
* PhyML is a software that estimates maximum likelihood phylogenies fromamdmi32009-07-216-0/+75
* - update to jpeg7dinoex2009-07-181-2/+2
* - Flip MAKE_JOBS_SAFE to MAKE_JOBS_UNSAFEpav2009-07-081-1/+1
* - fix PORTSCOUTdinoex2009-07-061-1/+1
* - Update to 1.97miwi2009-07-063-4/+14
* - cleanup ADDITIONAL_LIB_DIRSdinoex2009-07-051-1/+1
* p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. Thismiwi2009-07-015-0/+177
* PyCogent is a software library for genomic biology. It is a fully integratedmiwi2009-06-225-0/+887
* Update to Crux 1.1.0.jasone2009-06-213-9/+7
* - Update to 6.0.0amdmi32009-06-173-406/+438
* Change CONFIGURE_ENV --> USE_CSTD. [1]jasone2009-06-102-2/+6
* Convert most of remaining ports that depend on xorg-libraries toamdmi32009-06-092-2/+4
* - Update to 35.4.7 [1]itetcu2009-06-094-8/+27
* Add the biology/crux port.jasone2009-06-095-0/+131
* - Update lang/python26 and make Python 2.6.2 to the default Python versionmiwi2009-06-092-4/+3
* - Update to 1.11jadawin2009-06-082-4/+4
* 2009-05-31 biology/p5-bioperl-devel: no longer under developmentmiwi2009-06-0611-3118/+0
* - Update to 1.95miwi2009-06-032-4/+4
* - fix build for custom LOCALBASE in UL subdirdinoex2009-06-021-1/+1
* - fix build for custom LOCALBASEdinoex2009-06-011-0/+2
* LibSBML is an open-source programming library to help you read, write,miwi2009-05-296-0/+343
* - fix build with gnustep-make-2.2.0dinoex2009-05-211-2/+4
* - Mark most of my ports MAKE_JOBS_SAFE=yespgollucci2009-05-162-0/+4
* Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently fromitetcu2009-05-121-1/+2
* - Update to 1.94miwi2009-05-012-4/+4
* - Update to 1.7miwi2009-05-014-281/+29
* - Update to 1.93miwi2009-04-052-4/+4
* Bio::Glite is an interface to G-language Genome Analysis Environmentmiwi2009-04-035-0/+52
* - Update to 2009.03.01miwi2009-03-293-30/+93
* - Update to 1.91miwi2009-03-263-4/+5
* bump PORTREVISION after cmake updatemakc2009-03-251-0/+1
* - Mark BROKEN does not compilemiwi2009-03-241-0/+2
* - Update to 1.6.1miwi2009-03-203-683/+216
* - Mark DEPRECATED (no longer under development)miwi2009-03-202-0/+6
* Welcome to the new linux ports infrastructure which allows usingbsam2009-03-201-1/+1
* - Update to 1.90miwi2009-03-203-6/+9
* - Update to 0.1.24miwi2009-03-143-485/+571
* p5-Bio-Graphics is a simple GD-based renderer (diagram drawer)miwi2009-03-115-0/+222
* Rename PERL_VER to PERL_VERSION.skv2009-03-081-2/+2
* Remove variable PERL_VER from the ports tree at all - becauseskv2009-03-061-2/+2
* - Update to 4.2bmiwi2009-03-032-6/+6
* - Update to 1.6.0garga2009-02-246-1082/+1559
* - Add forgotten patchamdmi32009-02-241-0/+11
* - Update to 35.4.4amdmi32009-02-243-25/+47
* - update PORTSCOUTdinoex2009-02-161-1/+1
* - Update download locations, update WWWpgollucci2009-02-042-3/+2
* Reset dyeske@gmail.com at his request.linimon2009-02-034-8/+2
* - Update download locations, update WWWpgollucci2009-02-012-2/+2
* - Update download locationpav2009-02-011-2/+2
* - Update X.org ports to 7.4+ (few ports are more recent than the katamari).flz2009-01-244-5/+6
* - add LICENSE:dinoex2009-01-172-0/+4
* - Unbreak after p5-bioperl changed portrevisionpav2009-01-161-1/+1
* - Update to 3.0.3miwi2009-01-156-57/+122
* Fix plist with perl 5.8.9.tobez2009-01-141-1/+2
* - Chase math/gsl slib bumpmiwi2009-01-131-2/+2
* - Unbreak distinfo after portrevision bumppav2009-01-102-4/+3
* Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.gerald2009-01-085-4/+5
* - Remove conditional checks relevant only on FreeBSD 5.x and olderpav2009-01-066-31/+1
* - Update to 4.2miwi2008-12-262-4/+4
* Update to 1.92pgollucci2008-12-242-4/+4
* - Mark as brokenwxs2008-12-171-0/+2
* - update to 1.10leeym2008-12-113-14/+21
* Reset nemoliu due to maintainer-timeouts and no response to email.linimon2008-12-081-1/+1
* - Roll back to 4.6 as 4.7 is the development version and is constantly beingwxs2008-11-115-110/+117
* Mark as broken since it has been re-rolled for the 4th(?) time.wxs2008-11-081-0/+2
* Distfile was re-rolled. The changes were to fix some bugs in the code.wxs2008-11-073-10/+13
* Update to 4.7wxs2008-11-058-140/+309
* - Update to 2.8.1amdmi32008-10-234-150/+40
* - Unbreakrafan2008-10-213-7/+42
* - Update to 1.48miwi2008-10-113-19/+16
* - Update to 4.1miwi2008-09-303-8/+13
* - Respect PORTDOCS/PORTEXAMPLESgahr2008-09-092-188/+186
* Reset sf@slappy.org due to maintainer-timeouts and no response to email.linimon2008-09-031-1/+1
* - Fix buildgahr2008-08-281-2/+2
* - Update to 3.68gahr2008-08-272-6/+5
* Add -lf2c, this is the correct dependency. Bump portrevision.maho2008-08-232-0/+9
* Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.rafan2008-08-214-5/+0
* Unbreak building for 8-x.bsam2008-08-162-4/+114
* - update PORTSCOUTdinoex2008-08-131-1/+3
* - Update to 1.47miwi2008-08-123-53/+92
* - Update to 2.1.3pgollucci2008-08-013-4/+5
* - Remove USE_GCC where it can be satisfied with base compiler on followingpav2008-07-252-2/+0
* - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MA...pav2008-07-253-3/+5
* - Delete biology/nab port after being marked DEPRECATED for three monthspav2008-07-2415-1093/+0
* Update my ports to my freebsd addresspgollucci2008-07-232-2/+2
* - respect NOPORTEXAMPLES/NOPORTDOCS and fix plistitetcu2008-07-122-14/+15
* - Update to 2.1.2c.araujo2008-07-122-5/+5
* - extened PORTSCOUTdinoex2008-07-091-1/+1
* - Mark BROKEN: missing cpan dependency (interactive loop)pav2008-07-081-0/+2
* - Bump portrevision after openbabel updatebeech2008-07-071-1/+1
* - Update to 1.5.2.lippe2008-07-074-1355/+1063
* - Update to 1.45beech2008-07-043-26/+79
* - extend PORTSCOUTdinoex2008-06-241-1/+1
* - Fix plist files installation.lippe2008-06-211-1/+2
* SSAHA is a software tool for very fast matching and alignment of DNAlippe2008-06-2136-0/+1362
* - Fix fetch, update WWWpav2008-06-192-2/+2
* - Fix build dependsgahr2008-06-091-0/+3
* Bump portrevision due to upgrade of devel/gettext.edwin2008-06-0613-11/+13
* - Update to 3.67gahr2008-06-042-12/+7
* - cleanup FreeBSD 5.xdinoex2008-06-021-7/+1
* - Update to 1.09miwi2008-05-312-4/+4
* Teach the building cluster that these ports are not to be buildedwin2008-05-264-0/+12
* New port: biology/consed viewing and editing workbench for sequenceedwin2008-05-249-0/+221
* New port: biology/consed viewing and editing workbench for sequenceedwin2008-05-244-0/+22
* New port: biology/consed viewing and editing workbench for sequenceedwin2008-05-242-0/+49
* New port: biology/consed viewing and editing workbench for sequenceedwin2008-05-249-0/+1174
* Update to 1.08mat2008-05-232-4/+4
* - Update MASTER_SITES and WWW: linemiwi2008-05-224-61/+46
* - Include some ports in perl5 category.araujo2008-05-191-1/+1
* - Update maintainer's email addresspav2008-05-183-3/+3
* - Try to fix fetchpav2008-05-181-0/+2
* Update to 1.23erwin2008-05-152-4/+4
* NJplot is a tree drawing program able to draw any phylogenetic tree expressedpav2008-05-145-0/+145
* MUSCLE is multiple alignment software for protein and nucleotide sequences.pav2008-05-147-0/+232
* - add PORTSCOUTdinoex2008-05-041-0/+2
* Update to version 34.okazaki2008-05-012-11/+5
* - update to 0.8.2dinoex2008-04-309-456/+205
* - Update to 2.0.6miwi2008-04-292-5/+5
* Reset aaron's port maintainerships due to many maintainer-timeouts.linimon2008-04-291-1/+1
* - Mark BROKEN on -CURRENT: error: 'linkat' redeclared as different kind of sy...pav2008-04-261-0/+4
* - Remove unneeded dependency from gtk12/gtk20 [1]miwi2008-04-2019-50/+43
* implement @dirrmtry macro for the pkg-plistedwin2008-04-191-1/+1
* - Update mastersite.jmelo2008-04-181-1/+2
* - Replace SF with second working master sitepav2008-04-181-1/+1
* - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_C...araujo2008-04-176-10/+6
* - It seems that upstream removes their distfiles from sourceforge, so addrafan2008-04-171-1/+2
* - Update to 5.0.0rafan2008-04-1317-6851/+707
* - Sort pkg-plist before updating to 5.0.0rafan2008-04-131-888/+888
* Change maintainers e-mail address.ehaupt2008-04-111-2/+2
* - Update to 35.3.6clsung2008-04-102-5/+5
* - Chase the gsl shared lib bump.jadawin2008-04-081-2/+2
* - Update maintainer's emailrafan2008-04-061-3/+5
* MAPMAKER/EXP is a linkage analysis package designed to help construct primaryrafan2008-04-0628-0/+1101
* - Update to 5.68rafan2008-04-053-10/+10
* - Update to 1.1.3pav2008-04-053-185/+203
* - Chase fasta3 updatepav2008-04-021-1/+1
* - Update to 35.3.5rafan2008-03-303-53/+49
* - Fix build with GCC 4.2gahr2008-03-292-5/+18
* - Add missing dependensmiwi2008-03-271-1/+3
* - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORGmiwi2008-03-261-2/+1
* - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORGmiwi2008-03-241-2/+2
* - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORGmiwi2008-03-241-2/+1
* - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORGmiwi2008-03-243-6/+3
* - Remove USE_X_PREFIXbeech2008-03-222-4/+2
* - Update to 2.0.5jadawin2008-03-191-5/+10
* - Update to version 2.0.5jadawin2008-03-192-21/+10
* - Update to 1.07miwi2008-03-122-4/+4
* Fix pkg-plistmaho2008-03-101-0/+142
* Update to 1.0r2.maho2008-03-076-955/+636
* - File was rerolled for a small bugfix.miwi2008-02-273-3/+16
* - Restore clustalw symlink, other ports rely on itpav2008-02-271-1/+5
* - Update to 2.4.3miwi2008-02-262-4/+4
* - Update to 2.0.3pav2008-02-266-61/+8
* Umark BROKEN, stale distfile removed from ftp-master.erwin2008-01-271-2/+0
* - Update to 2.4.2 (fix fetch problems)miwi2008-01-262-4/+4
* Mark BROKEN: does not fetcherwin2008-01-261-0/+2
* - Update to 2.4.1miwi2008-01-214-15/+46
* Fix build on !i386arved2008-01-041-9/+5
* - Update to 2.0pav2007-12-1615-406/+60
* MrBayes is a program for the Bayesian estimation of phylogeny.miwi2007-12-155-0/+60
* MUMmer is a modular system for the rapid whole genome alignment of finishedmiwi2007-12-155-0/+79
* - Mark BROKEN outside i386: does not compilepav2007-12-051-0/+4
* - Allow build with AMD64miwi2007-10-292-2/+5
* - Update to 1.1.0clsung2007-10-243-74/+86
* - Update to 2.1.2bmiwi2007-10-245-37/+20
* Migration from bison 1.x to 2.xade2007-10-171-1/+2
* - Update to 2.1miwi2007-10-087-18/+196
* - Sort category Makefilessat2007-10-061-2/+2
* - Fix typo in WWWpav2007-10-041-1/+1
* Remove always-false/true conditions based on OSVERSION 500000edwin2007-10-041-1/+1
* Mark as broken on gcc4.2.linimon2007-10-021-1/+7
* Mark as broken with gcc4.2.linimon2007-10-021-0/+4
* biology/linux-foldingathome needs to run as root?edwin2007-09-233-6/+8
* Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+.linimon2007-09-087-39/+5
* - Update to 1.06miwi2007-09-072-12/+5
* - Update to version 2.3itetcu2007-09-034-46/+57
* - Chase x11-toolkits/pmw renamed to x11-toolkits/py-Pmwrafan2007-09-021-2/+2
* Replace IGNORE with ONLY_FOR_ARCHS for this binary port.kris2007-08-091-9/+2
* Fix pkg-plistlme2007-08-031-0/+1
* Update to 2.0.10lme2007-08-014-22/+22
* - cleanup after gnustep-make-2.0.1dinoex2007-07-231-1/+0
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.maho2007-07-141-7/+2
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.maho2007-07-121-4/+2
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.maho2007-07-122-9/+2
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.maho2007-07-121-5/+1
* - Runs on 7.0-CURRENT with compat6xpav2007-07-081-0/+4
* - Update to version 9rafan2007-07-083-1313/+1505
* dyeske at yahoo dot com -> dyeske at gmail dot comedwin2007-07-064-6/+6
* chase math/gsl lib versionijliao2007-06-291-2/+2
* Bump to v0.16.aaron2007-06-203-6/+53
* - Fix the build with GCC 4.2danfe2007-06-192-7/+32
* - Fix typos.miwi2007-05-311-3/+3
* - Update to 1.43miwi2007-05-304-92/+167
* BROKEN: Unfetchablekris2007-05-271-0/+2
* BROKEN with gcc 4.2kris2007-05-271-1/+7
* - update for gnustep-make-2.0.0dinoex2007-05-252-71/+79
* - update for gnustep-make-2.0.0dinoex2007-05-251-1/+1
* swap MASTER_SITES to improve fetchiness on pointyhat which is blocked from da...edwin2007-05-251-4/+2
* BROKEN: Unfetchablekris2007-05-251-0/+2
* - Chase openbabel updatepav2007-05-251-2/+2
* - Welcome X.org 7.2 \o/.flz2007-05-2035-20/+40
* [patch] cleanup non-supported FreeBSD versionsedwin2007-05-021-7/+2
* [patch] cleanup non-supported FreeBSD versionsedwin2007-05-021-7/+1
* [patch] cleanup non-supported FreeBSD versionsedwin2007-05-021-6/+2
* [patch] cleanup non-supported FreeBSD versionsedwin2007-05-021-7/+1
* Use my @FreeBSD.org address.nemoliu2007-04-301-1/+1
* - Update to 4.5clsung2007-04-243-14/+13
* - Unbreakmiwi2007-04-211-3/+3
* BROKEN: Unfetchablekris2007-04-201-0/+2
* [patch] cleanup non-supported FreeBSD versionsedwin2007-04-173-41/+1
* Remove always-true condition due to OSVERSIONedwin2007-04-161-1/+1
* - Remove unreachable OSVERSION code.edwin2007-04-161-13/+9
* - Fix after objformat removalpav2007-03-291-0/+3
* - Update to 1.5-beta2miwi2007-03-273-13/+14
* - MASTER_SITE is back, remove BROKENgabor2007-03-171-2/+0
* Reset razi@genet.sickkids.on.ca due to maintainer-timeouts and no response tolinimon2007-03-141-1/+1
generated by cgit (git 2.34.1) at 2024-12-28 21:55:22 +0800