aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* Bump PORTREVISION after open-mofit updatemakc2011-05-024-2/+4
* Fix build with open-motif-2.3.3makc2011-05-023-7/+72
* - Updated WWW: to a working linkglarkin2011-04-231-14/+17
* Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.wen2011-04-225-0/+49
* - Update to 0.4.2wen2011-04-132-3/+3
* Update to GNU make 3.82 after numerous -exp runs.ade2011-04-121-0/+11
* - Update to 0.36wen2011-04-013-4/+14
* - Get Rid MD5 supportmiwi2011-03-1983-110/+0
* - Take maintainershipwen2011-03-141-1/+1
* - Reassign to the heaptabthorpe2011-03-131-1/+1
* - Update to 0.35wen2011-02-282-3/+4
* - Move over to python2.5 or highermiwi2011-02-252-2/+2
* - Update to 0.8wen2011-02-152-4/+3
* - Update to 1.12.5culot2011-02-113-4/+4
* - Update to 5.1.09miwi2011-01-317-470/+508
* - Unbreak the port; I'm not sure how it could possibly work beforepav2011-01-282-12/+3
* - Change depobj for fasta3 to something that does not change on fasta updatespav2011-01-281-1/+1
* - Update to 36.3.2 to fix distfile fetching on pointyhatbeat2011-01-273-16/+13
* - Fix fetchpav2011-01-251-1/+1
* - Fix pkg-plist, got the wrong version beforepgollucci2010-12-311-0/+9
* - DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed.pgollucci2010-12-301-1/+0
* - Update to 1.4.1pgollucci2010-12-273-149/+143
* - Use canonical format for FreeBSD.org MAINTAINER addressessunpoet2010-12-262-2/+1
* - Update to 2.18wen2010-12-232-3/+3
* - Update to 0.34wen2010-12-232-3/+3
* - Fix fetchwen2010-12-212-2/+3
* - Update to 0.33wen2010-12-163-4/+4
* - Update to 0.32pgollucci2010-12-133-3/+11
* - fix fetch: wget is not required for fetchingpgollucci2010-12-122-6/+0
* Sync to new bsd.autotools.mkade2010-12-045-5/+5
* - Update to 0.4.1wen2010-12-022-4/+3
* Improve port description.danfe2010-11-291-7/+15
* - Also remove them from pkg-plist lists not from me that crept inpgollucci2010-11-241-1/+0
* - Update to 0.31wen2010-11-223-3/+7
* - Update to 2.1wen2010-11-222-4/+3
* - Update to 0.30wen2010-11-172-75/+76
* Fix plist.skreuzer2010-11-171-1/+1
* - Update to 2.15wen2010-11-163-196/+201
* - Update to 1.5.0wen2010-11-103-4/+41
* - Update to 0.28jadawin2010-11-093-7/+3
* - Unbreak build: CPP is now part of MAKE_ENVpav2010-11-081-1/+1
* - Update to 2.10wen2010-11-042-7/+6
* - Unbreak by removing some old and adding some new master sitesrene2010-10-311-5/+4
* - Update to 0.4.0wen2010-10-262-4/+4
* - Update to 0.26wen2010-10-253-5/+8
* - Update to 0.22wen2010-10-223-20/+20
* Update my MAINTAINER address to culot@FreeBSD.org.culot2010-10-201-1/+1
* - Update to 2.14wen2010-10-192-4/+4
* Punt autoconf267->autoconf268ade2010-10-161-1/+1
* - Update to 4.2.0wen2010-10-083-5/+6
* Round one migration of ports from automake{19,110} to automake111ade2010-10-062-2/+2
* - Add an additional MASTER_SITESsunpoet2010-10-011-1/+2
* Mark BROKEN: does not fetch.erwin2010-09-301-0/+1
* - Update to 2.13wen2010-09-263-4/+5
* - Update to 0.76wen2010-09-252-4/+4
* Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,mm2010-09-211-1/+2
* Also broken on sparc64 (and, by implication, ia64).linimon2010-09-171-2/+2
* Update to 1.3r1.3913.maho2010-09-174-636/+699
* - Update to 4.1.0wen2010-09-163-5/+28
* Autotools update. Read ports/UPDATING 20100915 for details.ade2010-09-161-1/+2
* - Update to 4.4cwen2010-09-082-4/+4
* - Update to 0.75wen2010-09-073-6/+12
* - Update to 1.13wen2010-09-072-4/+4
* - Update MAINTAINER to submitters new mail addressdecke2010-09-041-1/+1
* - Update to 2.10.0sahil2010-08-215-29/+13
* - Update USE_PYTHON in Makefile to reflect upstream Pythonglarkin2010-08-181-1/+1
* Update to 1.12:az2010-08-182-5/+5
* - Update to 2.1.5lwhsu2010-08-042-7/+12
* Fix typo in maintainer mail addressbapt2010-08-031-1/+1
* - Update to 1.12.4bapt2010-08-022-6/+11
* - Update the libmap instructions for amd64/8pav2010-07-292-4/+14
* - Update to 1.54wen2010-07-023-49/+146
* - Update to 2.11wen2010-06-302-4/+4
* - Update to 1.17wen2010-06-302-4/+4
* - Update to 1.16wen2010-06-242-4/+4
* - Update to 2.04wen2010-06-223-7/+6
* BROKEN should not be quoted.erwin2010-06-131-1/+1
* - Update to 1.15wen2010-06-122-5/+4
* Update to 1.10.tobez2010-06-112-7/+6
* - Update to 1.4.0pgollucci2010-06-083-75/+188
* LICENSE GPLv2dinoex2010-06-062-1/+3
* LICENSE LGPL21dinoex2010-06-051-0/+2
* - Update to 1.4.1wen2010-06-013-4/+25
* Bounce PORTREVISION for gettext-related ports. Have fun, ya'll.ade2010-05-311-1/+1
* - Update to 3.1.6sylvio2010-05-313-5/+5
* - drop USE_GNUSTEP_PREFIXdinoex2010-05-304-320/+318
* - Update to 4.0.1wen2010-05-242-4/+4
* - fix build for gnustep-base 1.21.0dinoex2010-05-241-2/+3
* - Update to 1.12.2wen2010-05-213-6/+7
* - Update to 2.09wen2010-05-182-4/+4
* - Update to 2.0.8wen2010-05-143-5/+4
* - Update to 2.0.7wen2010-05-102-5/+5
* - Update to 3.1.4sylvio2010-05-093-11/+18
* - Update to 1.00wen2010-05-082-5/+6
* - Removed BROKEN because file fetches and checksums correctlyglarkin2010-04-291-3/+2
* - Update to 2.04wen2010-04-202-4/+5
* - Update to 4.4awen2010-04-202-7/+7
* - update to 0.81dinoex2010-04-143-10/+32
* - Update to 6.2.0wen2010-04-076-75/+232
* - Update to 2.03wen2010-04-022-4/+4
* Mark various ports as broken or ignore on powerpc.linimon2010-04-013-3/+21
* - Update to 2.02wen2010-03-303-5/+6
* - Bump PORTREVISION to chase the update of math/gslwen2010-03-291-2/+2
* - update to 1.4.1dinoex2010-03-2818-20/+22
* - Update to 3.1.3wen2010-03-242-5/+5
* - Chase x11-toolkits/fltk updategahr2010-03-242-5/+5
* - Update to 3.22sylvio2010-03-222-4/+4
* - Update to 0.3.9wen2010-03-192-4/+4
* - Update to 2.01wen2010-03-102-4/+4
* - Update to 0.21wen2010-03-093-47/+41
* - Update to 0.18wen2010-03-033-35/+72
* p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XMLwen2010-03-015-0/+42
* - Update to 0.7wen2010-02-243-9/+8
* - Reset more ports I don't use anymorepgollucci2010-02-111-1/+1
* Update to 3.1.2edwin2010-02-102-4/+4
* - Update to 2.00wen2010-02-103-5/+5
* - update to jpeg-8dinoex2010-02-0518-18/+19
* - Update to 0.99wen2010-02-032-5/+5
* - Update to 3.1.1miwi2010-02-035-88/+40
* - use $SUB_FILES to dynamically adjust pkg-messagepgollucci2010-01-311-2/+1
* - Remove unneeded dependencies which is in perl-5.8.9 distkuriyama2010-01-294-11/+7
* - actually remove old patchpgollucci2010-01-171-31/+0
* - Fix on amd64pgollucci2010-01-174-0/+60
* - Remove unneeded dependencies which is in perl-5.8.9 dist from portskuriyama2010-01-161-2/+2
* - SUB_FILES += pkg-messagepgollucci2010-01-101-4/+1
* - Update to 1.03wen2010-01-092-5/+5
* - SBU_FILES += pkg-messagepgollucci2010-01-084-56/+54
* - Update to 1.995wen2010-01-072-4/+4
* - Update to 1.53wen2010-01-063-99/+39
* python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)wen2009-12-295-0/+35
* - Fix fetch errorwen2009-12-271-2/+2
* - Update to 0.3.7wen2009-12-242-4/+4
* - Update to 7.1.11miwi2009-12-224-41/+49
* - Update to 0.3.5wen2009-12-212-4/+4
* For ports maintained by ports@FreeBSD.org, remove names and/ordougb2009-12-2111-22/+0
* - Update to 1.1.4wen2009-12-182-11/+11
* - Update to 1.4wen2009-12-173-30/+126
* - Update to 0.3.4wen2009-12-162-4/+4
* - Turn over a bunch of p5- ports that change infrequently to perl@pgollucci2009-12-141-1/+1
* - Update to 1.994wen2009-12-113-4/+6
* - Update to 0.3.3wen2009-12-063-7/+7
* - Update to 1.993wen2009-12-042-4/+4
* - Update to 1.6.1wen2009-12-045-912/+939
* Chase math/gsl update,makc2009-12-021-2/+2
* - Update to 2.0.12wen2009-11-292-6/+5
* - Update my mail address to FreeBSDsylvio2009-11-281-1/+1
* - Mark MAKE_JOBS_UNSAFEpav2009-11-212-0/+2
* - Update to 1.992wen2009-11-202-5/+5
* - broken checksum mismatchmiwi2009-11-191-0/+2
* - Mark MAKE_JOBS_UNSAFEpav2009-11-191-0/+1
* pyfasta is a python module for fast, memory-efficient, pythonicwen2009-11-185-0/+52
* - Update to 21.1.1wen2009-11-184-29/+17
* Velvet is a de novo genomic assembler specially designed for short readamdmi32009-11-077-0/+244
* - Annotate that 8.x no longer needs libmap hackpav2009-10-011-1/+1
* - Update to 4.0.0wen2009-09-234-13/+23
* Update to Crux 1.2.0.jasone2009-09-203-26/+29
* UNBREAK: Probably was a temporary failure, checksums are ok now.garga2009-09-161-2/+0
* -Update to 3.69miwi2009-09-162-14/+10
* Bump PORTREVISION for everything that sets USE_FORTRAN=yes which nowgerald2009-09-136-5/+6
* - Update to 1.14jadawin2009-09-082-4/+4
* - Update to 138038miwi2009-09-054-444/+152
* - Update to 0.982miwi2009-08-292-5/+5
* Bio::SCF module allows you to read and update (in a restrictedmiwi2009-08-295-0/+46
* Io_lib is a library of file reading and writing code to provide amiwi2009-08-295-0/+107
* - Update to 3.21.araujo2009-08-282-5/+5
* - Update to 1.12miwi2009-08-282-5/+4
* Update to 35.4.9makc2009-08-232-4/+4
* Bio::NEXUS package provides an object-oriented, Perl-basedmiwi2009-08-235-0/+91
* - BROKEN checksum mismatchmiwi2009-08-221-0/+2
* - Switch SourceForge ports to the new File Release System: categories startin...amdmi32009-08-225-8/+5
* - Fix fetchmiwi2009-08-171-1/+1
* - Update MASTER_SITESmiwi2009-08-142-4/+2
* - Update to 4.3miwi2009-08-142-6/+6
* Fix PKGORIGINerwin2009-08-081-1/+1
* - Relax check on bioperl version; people keep forgetting to update this checkpav2009-08-031-1/+1
* - Unbreak fetchpav2009-08-031-1/+1
* -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.mezz2009-08-032-2/+2
* - bump all port that indirectly depends on libjpeg and have not yet been bump...dinoex2009-07-3114-7/+14
* Utilize %%SITE_PERL%% and %%PERL_ARCH%% in pkg-plistspgollucci2009-07-311-3/+3
* - lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checkspgollucci2009-07-232-14/+1
* PhyML is a software that estimates maximum likelihood phylogenies fromamdmi32009-07-216-0/+75
* - update to jpeg7dinoex2009-07-181-2/+2
* - Flip MAKE_JOBS_SAFE to MAKE_JOBS_UNSAFEpav2009-07-081-1/+1
* - fix PORTSCOUTdinoex2009-07-061-1/+1
* - Update to 1.97miwi2009-07-063-4/+14
* - cleanup ADDITIONAL_LIB_DIRSdinoex2009-07-051-1/+1
* p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. Thismiwi2009-07-015-0/+177
* PyCogent is a software library for genomic biology. It is a fully integratedmiwi2009-06-225-0/+887
* Update to Crux 1.1.0.jasone2009-06-213-9/+7
* - Update to 6.0.0amdmi32009-06-173-406/+438
* Change CONFIGURE_ENV --> USE_CSTD. [1]jasone2009-06-102-2/+6
* Convert most of remaining ports that depend on xorg-libraries toamdmi32009-06-092-2/+4
* - Update to 35.4.7 [1]itetcu2009-06-094-8/+27
* Add the biology/crux port.jasone2009-06-095-0/+131
* - Update lang/python26 and make Python 2.6.2 to the default Python versionmiwi2009-06-092-4/+3
* - Update to 1.11jadawin2009-06-082-4/+4
* 2009-05-31 biology/p5-bioperl-devel: no longer under developmentmiwi2009-06-0611-3118/+0
* - Update to 1.95miwi2009-06-032-4/+4
* - fix build for custom LOCALBASE in UL subdirdinoex2009-06-021-1/+1
* - fix build for custom LOCALBASEdinoex2009-06-011-0/+2
* LibSBML is an open-source programming library to help you read, write,miwi2009-05-296-0/+343
* - fix build with gnustep-make-2.2.0dinoex2009-05-211-2/+4
* - Mark most of my ports MAKE_JOBS_SAFE=yespgollucci2009-05-162-0/+4
* Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently fromitetcu2009-05-121-1/+2
* - Update to 1.94miwi2009-05-012-4/+4
* - Update to 1.7miwi2009-05-014-281/+29
* - Update to 1.93miwi2009-04-052-4/+4
* Bio::Glite is an interface to G-language Genome Analysis Environmentmiwi2009-04-035-0/+52
* - Update to 2009.03.01miwi2009-03-293-30/+93
* - Update to 1.91miwi2009-03-263-4/+5
* bump PORTREVISION after cmake updatemakc2009-03-251-0/+1
* - Mark BROKEN does not compilemiwi2009-03-241-0/+2
* - Update to 1.6.1miwi2009-03-203-683/+216
* - Mark DEPRECATED (no longer under development)miwi2009-03-202-0/+6
* Welcome to the new linux ports infrastructure which allows usingbsam2009-03-201-1/+1
* - Update to 1.90miwi2009-03-203-6/+9
* - Update to 0.1.24miwi2009-03-143-485/+571
* p5-Bio-Graphics is a simple GD-based renderer (diagram drawer)miwi2009-03-115-0/+222
* Rename PERL_VER to PERL_VERSION.skv2009-03-081-2/+2
* Remove variable PERL_VER from the ports tree at all - becauseskv2009-03-061-2/+2
* - Update to 4.2bmiwi2009-03-032-6/+6
* - Update to 1.6.0garga2009-02-246-1082/+1559
* - Add forgotten patchamdmi32009-02-241-0/+11
* - Update to 35.4.4amdmi32009-02-243-25/+47
* - update PORTSCOUTdinoex2009-02-161-1/+1
* - Update download locations, update WWWpgollucci2009-02-042-3/+2
* Reset dyeske@gmail.com at his request.linimon2009-02-034-8/+2
* - Update download locations, update WWWpgollucci2009-02-012-2/+2
* - Update download locationpav2009-02-011-2/+2
* - Update X.org ports to 7.4+ (few ports are more recent than the katamari).flz2009-01-244-5/+6
* - add LICENSE:dinoex2009-01-172-0/+4
* - Unbreak after p5-bioperl changed portrevisionpav2009-01-161-1/+1
* - Update to 3.0.3miwi2009-01-156-57/+122
* Fix plist with perl 5.8.9.tobez2009-01-141-1/+2
* - Chase math/gsl slib bumpmiwi2009-01-131-2/+2
* - Unbreak distinfo after portrevision bumppav2009-01-102-4/+3
* Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.gerald2009-01-085-4/+5
* - Remove conditional checks relevant only on FreeBSD 5.x and olderpav2009-01-066-31/+1
* - Update to 4.2miwi2008-12-262-4/+4
* Update to 1.92pgollucci2008-12-242-4/+4
* - Mark as brokenwxs2008-12-171-0/+2
* - update to 1.10leeym2008-12-113-14/+21
* Reset nemoliu due to maintainer-timeouts and no response to email.linimon2008-12-081-1/+1
* - Roll back to 4.6 as 4.7 is the development version and is constantly beingwxs2008-11-115-110/+117
* Mark as broken since it has been re-rolled for the 4th(?) time.wxs2008-11-081-0/+2
* Distfile was re-rolled. The changes were to fix some bugs in the code.wxs2008-11-073-10/+13
* Update to 4.7wxs2008-11-058-140/+309
* - Update to 2.8.1amdmi32008-10-234-150/+40
* - Unbreakrafan2008-10-213-7/+42
* - Update to 1.48miwi2008-10-113-19/+16
generated by cgit (git 2.34.1) at 2024-11-19 05:28:27 +0800