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* Adding port biology/p5-Bio-Phylo, Phylogenetic analysis using perl.aaron2006-05-145-0/+110
* - Update to 34.t25.d6sem2006-05-084-38/+80
* Update to 21.u1.d1 (fixes fetch).lawrance2006-05-075-27/+18
* - Satisfy portlintsem2006-05-071-4/+3
* Add protomol 2.0.3, OO, component based, framework for molecularehaupt2006-05-065-0/+201
* Remove USE_REINPLACE from all categories starting with Bedwin2006-05-0421-22/+0
* - Update to 1.89leeym2006-05-036-16/+60
* Bioperl-run contain modules that provides a PERL interface to variousgarga2006-05-035-0/+784
* Bioperl-run contain modules that provides a PERL interface to variousgarga2006-05-035-0/+752
* - Update to 1.0.0pav2006-04-263-40/+174
* BROKEN: Does not compilekris2006-04-231-0/+2
* Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking aboutlinimon2006-04-055-5/+5
* Reset jeremy@external.org who has not responded to email asking aboutlinimon2006-04-051-1/+1
* - Update to 2006.02.13mnag2006-04-053-8/+8
* Use SUB_FILES for pkg-messageedwin2006-04-014-1/+4
* For EMBOSS:thierry2006-03-3122-1458/+7820
* - Update to 34.t25.d5pav2006-03-212-4/+4
* - Update to 5.743garga2006-03-194-44/+13
* Add lagan 1.2, efficient tools for large-scale multiple alignments ofgarga2006-03-176-0/+136
* Add mafft 5.734, multiple sequence alignments based on fast Fouriergarga2006-03-156-0/+119
* Add dotter 20021204 # last modified date in FTP server, a viewer forgarga2006-03-154-0/+63
* Add blat 33, a fast tool for local sequence similarity searches.garga2006-03-156-0/+100
* Add belvu 2.29, a viewer for multiple sequence alignments.garga2006-03-154-0/+54
* Update to 1.5maho2006-03-154-211/+229
* Bump PORTREVISION on glib12/gtk12 consumer ports to ease the upgrade path.ade2006-03-071-1/+1
* Conversion to a single libtool environment.ade2006-02-234-2/+8
* BROKEN: Configure failskris2006-02-201-0/+2
* Jalview is a multiple alignment editor written in Java. It is used widely in ahq2006-02-137-0/+137
* Reset maintainership to ports@ after ~4 months without any response to anynetchild2006-02-121-1/+1
* Update to 3.27.lawrance2006-02-103-10/+18
* Update to 34.t25.d4.lawrance2006-02-1011-167/+155
* Update to 2006.01.25.lawrance2006-02-092-10/+9
* Put PORTEPOCH back.lawrance2006-02-091-0/+1
* Update to 3.65.lawrance2006-02-083-73/+17
* Remove CONFLICTS with nss.marcus2006-02-031-1/+1
* Add missing USE_ICONVkris2006-01-261-0/+1
* SHA256ify (manually done and checked)edwin2006-01-222-1/+5
* SHA256ifyedwin2006-01-2230-0/+41
* Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtryedwin2006-01-224-12/+12
* Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtryedwin2006-01-221-1/+1
* Utilize EXAMPLESDIR.danfe2006-01-201-3/+3
* - Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoiddanfe2006-01-205-0/+57
* - Remove expired portspav2006-01-1517-462/+0
* - Update to 2.0.20060101pav2006-01-152-2/+4
* - Update to 2005.12.06pav2006-01-154-44/+60
* - Chase openbabel updatepav2006-01-141-3/+2
* BROKEN: Broken dependencykris2006-01-141-0/+2
* - Update graphics/libglut to 6.4.1.sem2006-01-123-4/+7
* Fix maintainer addressedwin2006-01-096-6/+6
* Hash with SHA-256.trevor2006-01-081-0/+1
* - Remove symlinks that belong to mtreepav2006-01-061-2/+0
* possible fix to unbreak biology/L-Breederedwin2006-01-039-107/+60
* - New upstream version; two patches incorporated.tdb2005-12-105-39/+9
* Update to 1.3.1ehaupt2005-12-072-3/+3
* - Update to 2005.13.07 to make fetchable againtdb2005-12-063-6/+31
* - Update to 3.18 to make fetchable againtdb2005-12-062-6/+11
* Update to 0.5.1mnag2005-12-063-23/+6
* - Fix fetch problemstdb2005-12-062-3/+5
* Add conflicts:edwin2005-12-051-1/+1
* Add conflicst:edwin2005-12-051-0/+2
* Fix port: biology/p5-bioperl-develedwin2005-12-041-0/+2
* - Re-add p5-bioperl-devel, development version of biology/p5-bioperlbarner2005-12-036-0/+2586
* - Unbreak by updating to 4.4barner2005-12-014-25/+22
* Add the right MASTER_SITE_SUBDIR, so that this port is fetchable fromfenner2005-11-261-0/+1
* - Add SHA256pav2005-11-2416-0/+16
* - Drop old povchem.c checksumpav2005-11-241-1/+4
* - BROKEN: Size mismatchpav2005-11-241-0/+2
* BROKEN: Size mismatchkris2005-11-161-0/+2
* Mass-conversion to the USE_AUTOTOOLS New World Order. The code presentade2005-11-152-2/+2
* - Mark it as DEPRECATED - master site disapearedgarga2005-11-111-0/+3
* - Mark it as DEPRECATED - master site disapearedgarga2005-11-111-0/+3
* - Mark it as DEPRECATED (mastersite disapeared)garga2005-11-111-0/+3
* With portmgr hat on, reset maintainership of knu's ports since he haslinimon2005-11-111-1/+1
* Update to 1.41mnag2005-11-115-44/+87
* Update to 3.14bmnag2005-11-102-9/+11
* Remove expired portskris2005-11-057-110/+0
* Bump PORTREVISION to chase the glib20 shared library update.marcus2005-11-054-3/+4
* Mark DEPRECATED since upstream is unmaintained and mastersite is gone.lawrance2005-10-291-0/+3
* BROKEN: Unfetchablekris2005-10-281-0/+2
* Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser forehaupt2005-10-165-0/+61
* - Update to 20050605sem2005-10-125-20/+36
* - Update to 3.13. It fixes fetching.sem2005-10-124-167/+61
* Update to 0.9.8maho2005-10-103-318/+363
* Checking MACHINE_ARCH is deprecated.trevor2005-09-241-1/+1
* Update to version 7hq2005-09-203-47/+160
* Don't strip static libraries on installation ;)vs2005-09-141-1/+2
* Add p5-Bio-Das 1.02, client-side library for Distributed Genomegarga2005-09-015-0/+158
* This port is scheduled for deletion on 2005-09-22 if it is still brokenkris2005-07-231-0/+2
* - Update to 1.0.0pat2005-06-133-368/+365
* change the libtool version to use from 1.3 to 1.5oliver2005-06-011-1/+1
* - Update to 2.10.0pav2005-05-305-42/+78
* - Update to 2.10.0pav2005-05-303-995/+1221
* Finish repo copy of wxgtk 2.4.2 ports to wxgtk24*fjoe2005-05-132-3/+3
* - Fix the packing list [1]jylefort2005-04-303-5/+6
* - Update to 5.0jylefort2005-04-2915-782/+851
* Bump PORTEPOCH. 3.6 < 3.62arved2005-04-221-0/+1
* Upgrade to 3.62arved2005-04-212-3/+3
* - update grappa to 2.0leeym2005-04-164-29/+13
* At Kris's request, back out the MACHINE_ARCH spelling correction untilobrien2005-04-129-9/+9
* - Change maintainer's email address.flz2005-04-121-1/+1
* - ARCH is defined in bsd.port.pre.mkflz2005-04-111-1/+3
* Assist getting more ports working on AMD64 by obeying theobrien2005-04-119-9/+9
* Upgrade to 0.5 and take maintainership.thierry2005-04-094-9/+25
* Try to unbreak on amd64 and ia64kris2005-03-271-1/+1
* BROKEN: Unfetchablekris2005-03-271-0/+2
* Fix build on amd64maho2005-03-241-2/+11
* - Add 'java' categoryhq2005-03-201-2/+1
* - Fix man page damage I did last nightpav2005-03-201-7/+9
* - Update to 2.2.10 from 20041020pav2005-03-206-196/+161
* From the PR:danfe2005-03-182-4/+16
* Bump PORTREVISION to chase the glib20 shared lib version change.marcus2005-03-124-3/+4
* - biology/act is redundant after biology/artemis updatesem2005-03-125-1648/+0
* - Update to version 6sem2005-03-124-1505/+1529
* Add finchtv 1.3.0, a chromatogram trace viewer.thierry2005-03-126-0/+209
* Fix build on 4.xkrion2005-02-191-0/+4
* As previously announced, remove ports that have reached their expiry date,kris2005-02-197-455/+0
* Update to version 2.0.3krion2005-02-183-10/+13
* Readd mistakenly removed patch to honour CC/CFLAGS.krion2005-02-181-0/+43
* Update to version 1.40krion2005-02-183-47/+6
* Fix unfetchable tarball, it was renamed and relocated on originalkrion2005-02-182-4/+4
* - Add (or fix) CONFLICTS line. The ports install bin/digest.sem2005-02-121-0/+2
* update to 0.97maho2005-02-074-338/+380
* With portmgr hat on, reset maintainership of this port. All of wjv'slinimon2005-01-221-1/+1
* o update to 4.3maho2005-01-202-7/+4
* Update to 0.6.2.knu2004-12-263-7/+26
* This port is scheduled to be removed on 2005-02-18 if it is stillkris2004-12-192-0/+4
* Update to version 2.0.8krion2004-12-193-10/+19
* - Update to 2004.12.16sem2004-12-182-3/+3
* Clean up wording of IGNORE output.linimon2004-12-171-1/+1
* Unquote the IGNORE string.linimon2004-12-171-1/+1
* With portmgr hat on, switch from BROKEN to ignore. It does indeed build.linimon2004-12-171-1/+1
* - Fix OPTIONS handlingpav2004-12-121-3/+1
* Not a real update with the last patch.sem2004-12-112-4/+5
* - This update brings seaview to the latest release (dated 09.24.04sem2004-12-111-1/+1
* - Add some sites I found with Google, as old master site don't have thispav2004-12-091-1/+4
* BROKEN: Broken distinfo filekris2004-12-041-0/+2
* Fix build on Python 2.4perky2004-12-021-0/+14
* Update MASTER_SITES and WWW: linekrion2004-11-272-2/+2
* [new port] biology/embassysem2004-11-275-0/+271
* - Update to 2.9.0sem2004-11-269-1812/+1632
* Add missing fileskris2004-11-261-0/+11
* - Update to 2.03sem2004-11-267-384/+175
* - Remove a junk white space.sem2004-11-261-1/+1
* - Update to 2.3.2sem2004-11-265-69/+38
* Minor cleanup.linimon2004-11-231-2/+2
* - Update biology/biojava to 1.30vs2004-11-223-613/+255
* With portmgr hat on, reset inactive maintainer. These ports are now uplinimon2004-11-208-8/+8
* With portmgr hat on, reset inactive maintainer.linimon2004-11-201-1/+1
* - Distfiles change every few days, so drop md5 checking on thempav2004-11-182-4/+5
* Add blast, a powerful software package for gene and protein identification,pav2004-11-126-0/+324
* Bump PORTREVISIONS for all ports that depend on atk or pango to ease in themarcus2004-11-084-4/+4
* - Fix build on amd64 (crude hack to pass -fPIC to c++ compiles)pav2004-11-071-0/+11
* Update to 3.14kevlo2004-11-063-5/+4
* Correct a typo: s/linux-opera/linux-openmotif/g.mezz2004-11-021-1/+1
* - Update to 2004.06.16pav2004-11-024-167/+276
* Chase the linux-openmotif shared library version and mark biology/spdbv asmezz2004-11-021-1/+4
* Now installs on FreeBSD 5.x.kris2004-10-291-7/+1
* - Update to 1.30pav2004-10-283-128/+209
* Avoid the use of != statements in ports Makefilemaho2004-10-241-1/+5
* - Update to 3.62pav2004-10-123-6/+16
* BROKEN on 5.x: Does not compilekris2004-09-291-1/+7
* Upgrade to latest revision to make fetchable again.thierry2004-09-252-3/+3
* Update config.h and unbreak.thierry2004-09-241-2/+2
* The build should be fixed now, so remove BROKEN mark.danfe2004-09-231-7/+1
* BROKEN on 5.x: Does not compilekris2004-09-191-1/+7
* BROKEN on 5.x: Does not installkris2004-09-191-0/+4
* BROKEN on 5.x: Does not installkris2004-09-191-0/+4
* Unbreak the build on 5.X and -CURRENT.danfe2004-09-181-0/+44
* BROKEN on 5.x: Does not compilekris2004-09-181-1/+7
* - add missing MAN1 and MAN3leeym2004-09-042-357/+537
* - Unbreak by upgrading to 4.2;thierry2004-08-204-444/+387
* biology/lsysexp is not brokenedwin2004-08-181-3/+5
* This is now buildable on 5.x, remove BROKEN.kris2004-08-171-7/+1
* After devel/p5-File-Temp has gained an IGNORE for PERL_LEVEL > 500800, allmat2004-08-121-1/+3
* - Update to 5.2pav2004-07-312-3/+13
* Use X_IMAKE_PORT instead of dist-specific imake dependencies. While here,anholt2004-07-241-6/+3
* Update to version 2.7.2.1.1krion2004-07-105-42/+35
* Apply a big libtool patch to allow porters to use the libtool installed bymarcus2004-07-101-1/+1
* Fix distsitevs2004-07-061-2/+1
* BROKEN: Checksum mismatchkris2004-07-031-0/+2
* Update to 4.6vs2004-07-027-51/+58
* BROKEN: Does not buildkris2004-07-021-0/+2
* Update to fix fetch. Rework PORTVERSION to be more like biology/fasta3linimon2004-07-014-9/+11
* Chase mastersite and fix checksum to unbreak. (Changes are inclusion of alinimon2004-07-012-8/+4
* Update to 1.7.6.1.linimon2004-06-304-11/+43
* Drop maintainershiplioux2004-06-241-1/+1
* Fix MASTER_SITES:vs2004-06-231-2/+2
* Add ariadne 1.3, programs to compare protein sequences andkrion2004-06-225-0/+60
* Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDENkris2004-06-222-1/+5
* BROKEN: Checksum mismatchkris2004-06-201-0/+2
* Replace explicit imake dependency with USE_IMAKE=yesanholt2004-06-181-5/+1
* Update to 20040613 releaselioux2004-06-132-3/+3
* - Remove obsolete MASTER_SITESkrion2004-06-081-2/+1
* - Update MASTER_SITESpav2004-06-021-3/+3
* [PATCH] biology/mopac patchsite fixedwin2004-06-011-1/+1
* [PATCH] biology/mopac distsite fixedwin2004-06-011-1/+1
* [PATCH] biology/gff2ps distsite fixedwin2004-06-011-3/+3
* - Update WWWpav2004-05-301-1/+1
* - Fix MASTER_SITESkrion2004-05-231-4/+1
* - Remove long time unresponsive MASTER_SITEpav2004-05-221-1/+0
* - Update MASTER_SITES and WWW: linekrion2004-05-222-2/+2
* Add forgotten patches...thierry2004-05-214-2/+62
* BROKEN: Broken pkg-plistkris2004-05-211-0/+2
* unbreak, only minor changes in the distfiles (see PR)eik2004-05-182-8/+7
* Add a missing BUILD_DEPENDS.thierry2004-05-111-0/+1
* Upgrade to 2.0b7 and unbreak.thierry2004-05-117-113/+128
* Fix MASTER_SITESmarkus2004-05-091-1/+1
* Make portlint happy by replacing space to tabmaho2004-05-072-4/+4
* - update to 4.5.3petef2004-05-026-17/+235
* - Honor CFLAGSkrion2004-04-161-1/+1
* BROKEN: Checksum mismatchkris2004-04-121-0/+2
* Mark this port BROKEN with gtk+-2.4.marcus2004-04-111-0/+2
* Tidy up whitespace.trevor2004-04-112-6/+6
* Trim whitespace.trevor2004-04-112-66/+66
* Add openbabel dependency (bento log forwarded by kris).trevor2004-04-091-0/+2
* Update to 1.7.8.trevor2004-04-083-16/+16
* After patching, remove the carriage-return characters from povchem.ctrevor2004-04-071-0/+2
* Chase home page.trevor2004-04-071-1/+1
* Fix build with gtk 2.4.adamw2004-04-051-1/+6
* Chase the glib20 update, and bump all affected ports' PORTREVISIONs.marcus2004-04-054-3/+4
* Remove category pkg/COMMENT files in favour of a COMMENT variable in thekris2004-04-022-1/+2
* SIZEify (maintainer timeout)trevor2004-03-3134-0/+38
* Add SIZE data.knu2004-03-221-0/+1
* Do not hardcord PICFLAGmaho2004-03-201-7/+1
* Backout previous change of PICFLAG, sincemaho2004-03-191-0/+6
* -fPIC is appropreate on all architectures.maho2004-03-191-6/+0
* Add size data, approved by maintainers.trevor2004-03-191-0/+1
* 1) Silent version up without changing the version numbermaho2004-03-183-6/+6
* Add size data.trevor2004-03-181-0/+1
* SIZEify.trevor2004-03-182-0/+2
* 1) update to 0.9.3maho2004-03-175-11/+44
* Whoa there, boy, that's a mighty big commit y'all have there...ade2004-03-141-1/+1
* - Update to version 2003.09.21krion2004-03-124-15/+9
* Insert "-l" into PATCH_ARGS, to cause the "patch" command to ignoretrevor2004-03-091-0/+1
* Add MD5 of 2004-01-06 version of povchem.c. Its contents aretrevor2004-03-091-1/+1
* Unmark as broken for 4.x; instead, mark as ignore for perl < 5.6.linimon2004-03-081-2/+2
* BROKEN on amd64 and ia64: Does not compile (missing -fPIC)kris2004-03-071-1/+7
* Maintainer reports being unable to look after this port any longer.linimon2004-03-071-1/+1
* - Update to version 0.4krion2004-02-282-3/+3
* - Fix MASTER_SITESkrion2004-02-281-1/+1
* Update to 20040226 releaselioux2004-02-273-3/+10
* BROKEN on alpha: Does not compilekris2004-02-231-1/+7
* BROKEN on alpha 5.x: does not compilekris2004-02-231-1/+7
* BROKEN: Checksum mismatchkris2004-02-221-0/+2
* BROKEN on 4.x: Configure failskris2004-02-221-1/+7
* BROKEN: Does not fetchkris2004-02-221-0/+2
* BROKEN: Checksum mismatchkris2004-02-221-0/+2
* Upgrade to 1.23.des2004-02-106-1001/+1125
* USE_SIZEifylioux2004-02-082-0/+2
* Correct whitespace in COMMENTkris2004-02-071-1/+1
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