aboutsummaryrefslogtreecommitdiffstats
path: root/math
Commit message (Collapse)AuthorAgeFilesLines
* - Update to 8.300.3danilo2018-01-063-8/+9
| | | | | - Add science/szip to LIB_DEPENDS to make Q/A happy - Declare BROKEN_powerpc64 earlier to make portlint happy
* math/py-matplotlib: unbreak build with Clang 6 (C++14 by default)jbeich2018-01-061-0/+111
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | extern/ttconv/pprdrv_tt.cpp:245:41: error: cast from pointer to smaller type 'char' loses information font->Copyright[length]=(char)NULL; ^~~~~~~~~~ extern/ttconv/pprdrv_tt.cpp:261:42: error: cast from pointer to smaller type 'char' loses information font->FamilyName[length]=(char)NULL; ^~~~~~~~~~ extern/ttconv/pprdrv_tt.cpp:277:37: error: cast from pointer to smaller type 'char' loses information font->Style[length]=(char)NULL; ^~~~~~~~~~ extern/ttconv/pprdrv_tt.cpp:293:40: error: cast from pointer to smaller type 'char' loses information font->FullName[length]=(char)NULL; ^~~~~~~~~~ extern/ttconv/pprdrv_tt.cpp:309:39: error: cast from pointer to smaller type 'char' loses information font->Version[length]=(char)NULL; ^~~~~~~~~~ extern/ttconv/pprdrv_tt.cpp:325:40: error: cast from pointer to smaller type 'char' loses information font->PostName[length]=(char)NULL; ^~~~~~~~~~ extern/ttconv/pprdrv_tt.cpp:340:42: error: cast from pointer to smaller type 'char' loses information font->PostName[length/2]=(char)NULL; ^~~~~~~~~~ extern/ttconv/pprdrv_tt.cpp:355:41: error: cast from pointer to smaller type 'char' loses information font->Trademark[length]=(char)NULL; ^~~~~~~~~~ extern/ttconv/pprdrv_tt.cpp:1041:19: error: cast from pointer to smaller type 'char' loses information temp[len]=(char)NULL; /* a buffer and make it ASCIIz. */ ^~~~~~~~~~ Reported by: antoine (via bug 224669)
* Update to 4.0sunpoet2018-01-062-4/+4
| | | | Changes: http://search.cpan.org/dist/Math-MPFR/CHANGES
* math/coinmp: unbreak build with Clang 6 (C++14 by default)jbeich2018-01-054-0/+62
| | | | | | | | | | | | | | | | | | | ClpModel.cpp:3848:24: error: reinterpret_cast from 'nullptr_t' to 'const char *' is not allowed reinterpret_cast<const char*> (NULL) /*integrality*/, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ OsiClpSolverInterface.cpp:1451:50: error: reinterpret_cast from 'nullptr_t' to 'int *' is not allowed messagesPointer->setDetailMessages(100,10000,reinterpret_cast<int *> (NULL)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from CglLandPSimplex.cpp:11: In file included from ./CglLandPSimplex.hpp:31: ./CglLandPUtils.hpp:88:25: error: reinterpret_cast from 'nullptr_t' to 'OsiRowCut *' is not allowed cuts_.resize(i, reinterpret_cast<OsiRowCut *> (NULL)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CbcModel.cpp:5322:41: error: reinterpret_cast from 'nullptr_t' to 'double *' is not allowed clpSolver->setFakeObjective(reinterpret_cast<double *> (NULL)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Reported by: antoine (via bug 224669)
* - Mark MAKE_JOBS_SAFE, this fixes build on mips and mips64amdmi32018-01-041-0/+1
| | | | Approved by: portmgr blanket
* - Update to 1.10wen2018-01-042-4/+4
| | | | Changes: http://search.cpan.org/src/MARKOV/Math-Polygon-1.10/ChangeLog
* - Update to 4.10.1wen2018-01-043-63/+210
| | | | | PR: 222339 Submitted by: lbartoletti@tuxfamily.org
* - Update to 1.08wen2018-01-032-4/+4
| | | | Changes: http://cpansearch.perl.org/src/MARKOV/Math-Polygon-1.08/ChangeLog
* New USES=eigentcberner2018-01-033-7/+4
| | | | | | | | | | | | | | | | | | | | | | Usage: USES=eigen:<version>[,<type>] version: 2 or 3 (required) type: build (default), run For example: USES=eigen:2,build,run will add a BUILD- and RUN_DEPENDS on math/eigen2, and USES=eigen:3 will add a BUILD_DEPENDS on math/eigen3. * Convert the existing ports to use it - biology/iqtree: remove run time dependency (seemed not to be needed) - graphics/movit: remove run time dependency (seemed not to be needed) - science/avogadro: add run time dependeny (installed cmake file requires it to be present) Reviewed by: rakuco, mat Differential Revision: https://reviews.freebsd.org/D13702
* Add a patch to fix the build with newer versions of SIP.rakuco2018-01-021-0/+48
| | | | | | | | | | | | | | | We're currently testing an update to SIP 4.19.6, but it breaks qtiplot's build. This patch, obtained via Debian and Gentoo, allows the port to build with both SIP 4.19.2 (currently in the tree) as well as 4.19.6. In the future, we might look into disabling Python scripting support: it tends to break with almost every SIP update, and upstream has stopped releasing the source code for newer qtiplot releases. PR: 224739 Obtained from: https://anonscm.debian.org/git/debian-science/packages/qtiplot.git/tree/debian/patches/20_fix_FTBFS_sip4.19.patch Obtained from: https://bugs.gentoo.org/641514#c2
* Fix up Makefiles for ports that used to fetch from www.sourcefiles.org.linimon2018-01-021-2/+4
| | | | | | | | | It is gone. While here, chase other mastersites, pet portlint, and set DEPRECATED for ports that do not fetch from alternative sites. Note: most of these ports are ancient and unmaintained.
* New port: math/symmetrica: Collection of routines for combinatorial mathematicsyuri2018-01-026-0/+57
| | | | | | Submitted by: myself Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13711
* Improve CMake style in my portsjbeich2018-01-011-7/+8
| | | | | | | - Convert to CMAKE_{ON,OFF} helpers - Convert to _CMAKE_BOOL option helpers - android-file-transfer: Share _CMAKE_BOOL via _IMPLIES - Annotate types
* math/eigen3: Added NO_ARCH=yesyuri2017-12-311-0/+1
| | | | | | | PR: 224630 Submitted by: myself Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13698
* New port: math/flann: Library for fast nearest neighbor searches in high ↵yuri2017-12-318-0/+178
| | | | | | | | dimensional spaces Submitted by: myself Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13692
* math/sundials: Changed to using <opt>_IMPLIES for HYPRE and PETSC options, ↵yuri2017-12-303-20/+32
| | | | | | | | | and removed the .include clause Submitted by: myself Reported by: jbeich Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13653
* Fix WWWsunpoet2017-12-301-1/+1
| | | | Approved by: portmgr (blanket)
* Fix WWWsunpoet2017-12-301-1/+1
| | | | Approved by: portmgr (blanket)
* Fix WWWsunpoet2017-12-301-1/+1
| | | | Approved by: portmgr (blanket)
* Update to 1.07sunpoet2017-12-282-4/+4
| | | | Changes: http://search.cpan.org/dist/Math-Polygon/ChangeLog
* math/p5-Math-Pari: set LLD_UNSAFE to avoid linking with lldemaste2017-12-271-0/+1
| | | | | | | | | | lld defaults to disallowing relocations in readonly segments (e.g., the one containing .text). For now just fall back to linking with ld.bfd if the system ld is lld. PR: 214864 Approved by: portmgr (LLD_UNSAFE blanket) Sponsored by: The FreeBSD Foundation
* - Upgrade to 0.21.1wen2017-12-273-92/+8
| | | | | | | - Remove stale testing bits PR: 224598 Submitted by: john@saltant.com(maintainer)
* Deprecate ports broken for more than 6 monthsantoine2017-12-271-0/+2
|
* New port: math/sundials: SUite of Nonlinear and DIfferential/ALgebraic ↵yuri2017-12-2715-0/+411
| | | | | | | | | | | | Equation Solvers This port was originally created by Pedro Giffuni. He offered me to take over it. I updated it to 3.1.0, added many options, etc. The option FCMIX is broken upstream, so it is not present in the port. Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13647
* - Update to 8.300.2danilo2017-12-273-8/+18
|
* - Update to 2.3.0lwhsu2017-12-272-5/+4
|
* math/adept: Replaced DOCS option with PDFTEXDOCS option because the LaTeX ↵yuri2017-12-272-6/+9
| | | | | | | | dependency is huge. Reported by: adamw Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13643
* New port: math/adept: Combined array and automatic differentiation library ↵yuri2017-12-276-0/+101
| | | | | | | | | | | | | in C++ This library implements a very unusual and interesting approach. It takes a function of several arguments supplied by the caller, deconstructs its analytic structure using C++ type substitution for all values, and computes gradients (Jacobians) of the function while ony calling the function once. A very innovative approach. Submitted by: myself Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13635
* New port: math/zimpl: Language to translate the LP models into .lp or .mpsyuri2017-12-265-0/+88
| | | | | | Submitted by: myself Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13623
* Remove USE_AUTOTOOLS. There's already USES=autoreconf.tijl2017-12-261-1/+0
|
* Remove unneeded USE_AUTOTOOLS.tijl2017-12-261-1/+0
|
* New port: math/SCIP: Solver for mixed integer, mixed integer nonlinear ↵yuri2017-12-265-0/+483
| | | | | | | | programming Submitted by: myself Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13614
* New port: math/SoPlex: Optimization package for solving linear programming ↵yuri2017-12-267-0/+255
| | | | | | | | problems (LPs) Submitted by: myself Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13613
* Remove BROKEN_sparc64 statement which was originally added in r224062 bydanfe2017-12-241-2/+0
| | | | | linimon@ 9 years ago, for version 0.10. It now builds and packages fine on 10.4-STABLE running under QEMU 2.9.0.
* math/z3: Add missing dependency on devel/py-setuptoolsjrm2017-12-241-1/+2
| | | | | | | | PR: 224438 Reported by: cem Reviewed by: mat Approved by: 6yearold@gmail.com (maintainer) Differential Revision: https://reviews.freebsd.org/D13542
* Remove flavors from vtk6, it's not useful with PY_FLAVOR (initialantoine2017-12-241-2/+1
| | | | implementation of python flavors didn't have PY_FLAVOR)
* Update CMake to 3.10.1adridg2017-12-231-0/+4
| | | | | | | | | | | | | | | | | | | - https://blog.kitware.com/cmake-3-10-1-available-for-download/ - flang support - changes to automoc policies - support for FreeBSD package generation with CPack Necessary fixes to other ports: - cad/openvsp make search for libxml explicit - math/scalapack force C compiler to be compatible with mpi - deskutils/kdepim4 fix incorrect sources list - www/qt5-webkit fix incorrect sources list Thanks to Antoine for the multiple exp-runs. PR: 223872 Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13210
* - Update to 3.1.0.stephen2017-12-223-18/+4
|
* Update to 0.48sunpoet2017-12-222-4/+4
| | | | Changes: http://search.cpan.org/dist/Math-GMPz/CHANGES
* - Update to 0.7.4wen2017-12-212-7/+10
|
* New port: math/libmesh: Numerical simulation of partial differential equationsyuri2017-12-219-0/+612
| | | | | | Submitted by: myself Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13524
* Switch from swig 2.0 to swig 3.0bapt2017-12-212-2/+3
|
* Use swig 3.0bapt2017-12-201-1/+2
|
* Update to 0.47sunpoet2017-12-202-4/+4
| | | | Changes: http://search.cpan.org/dist/Math-GMPz/CHANGES
* Update to 2.16sunpoet2017-12-202-4/+4
| | | | Changes: http://search.cpan.org/dist/Math-GMP/Changes
* math/dynare: Update from 4.5.1 to 4.5.3joneum2017-12-203-41/+31
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This release is compatible with MATLAB versions 7.3 (R2006b) to 9.3 (R2017b) and with GNU Octave versions 4.2. Here is a list of the problems identified in version 4.5.1 and that have been fixed in version 4.5.2: - Fixed bug in perfect foresight solver: + If expected shocks were declared after the terminal period, as specified by the `periods` option, Dynare was crashing. + Models declared with the `linear` option were crashing if exogenous variables were present with a lead or lag. - After ML or Bayesian estimation when the smoother option or `mh_replic=0` were not specified, not all smoothed measurement errors were displayed. - Fixed error in reference manual about the `conditional_forecasts` command. - Fixed smoother behaviour, provide informative error instead of crashing when model cannot be solved. - The `nopathchange` preprocessor option was always triggered, regardless of whether it was passed or not. - When `ramsey_policy` is used, allow state variables to be set in `histval` block. - `histval` erroneously accepted leads, leading to cryptic crashes. - The prior MC draws from previous runs were not deleted, potentially resulting in loading stale files. - `estim_params_` was being declared `global` more than once. - Fixed crashes happening when simulating linear models with order>1. - Make empirical moments independent of `simul_replic`, as stated in the reference manual, by outputting moments computed with the first simulated sample. - The `prior_function` required a preceding `estimation`-command to properly set up the prior. - If the mode for a parameter was at exactly 0, `mode_check` was crashing. - Fixed `get_posterior_parameters`-routine which should not do more than getting parameters. As a consequence, the `shock_decomposition`-command did not correctly set the `parameter_set` for use in subsequent function calls if shocks are correlated or measurement error is present. - Fixed bug in Ramsey problem with constraints both on a policy instrument and another variable. Note that the constraint on a variable that is not an instrument of the Ramsey problem must be written with an equation tag in the model block. - Fixed bug in Ramsey problem with constraints on policy instrument. - Fixed crash with optimizer 5 when not used with DSGE model at order 1. - Fixed mex file used for third order approximation (was crashing on Matlab/Windows 7). - `isfile` routine was failing with MATLAB older than R2016b. This bug did not affect Octave. PR: 223430 Submitted by: fernando.apesteguia@gmail.com (maintainer) Approved by: tcberner (mentor) MFH: 2017Q4 Differential Revision: https://reviews.freebsd.org/D13058
* Enhance USES=uniquefiles to be more generic.mat2017-12-202-9/+2
| | | | | | | | | | | | | | | | This allows to have more complex renaming schemes. Until now, it could only add a prefix or a suffix, but this was not working at all for man pages, because it would give man/man1/pyfoo.1.gz-2.7 or man/man1/pyfoo-1-2.7.gz. With this change, a man page will be correctly renamed to man/man1/pyfoo-2.7.1.gz. Unfix ports that were already handling man pages. PR: 220214 Submitted by: Fukang Chen (previous patch) Exp-run by: antoine Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D13444
* Bring back mistakenly removed PORTEPOCHamdmi32017-12-181-0/+1
| | | | Reported by: Tamas TEVESZ <ice@extreme.hu>
* math/R-cran-car: updated to version 2.1-6dbn2017-12-182-5/+4
| | | | | | | | | - remove unused test dependencies: - math/R-cran-nloptr - changelog: - Made several functions compatible with vcov() in R-devel (3.5.0). Generated by: portcran (0.1.6)
* Update to 0.7.0bapt2017-12-154-45/+12
| | | | Register ncurses dependency
* Add missing IGNORE_WITH_PHP for various pecl-ports.tz2017-12-143-3/+3
| | | | | | | | | | After testing every pecl-* port with PHP 5.6, 7.0, 7.1 and 7.2 i set the IGNORE_WITH_PHP accordingly to the fallout. PR: 222165 Reported by: brnd Approved by: portmgr (blanket) Differential Revision: https://reviews.freebsd.org/D13476
* Add a -lite version for gnuplot which has minimal dependencies.glewis2017-12-133-0/+33
| | | | | This has been requested particularly by those running it in a headless environment.
* Fix packing list substitutions for the lite port.glewis2017-12-131-2/+2
|
* Prepare for gnuplot-lite by splitting up the configure options, theglewis2017-12-132-13/+38
| | | | | dependencies and adding some packing list substitution and hiding some of it based on the definition of "LITE".
* - Switch to options helpersamdmi32017-12-121-10/+4
| | | | | | - Switch to new test framework Approved by: portmgr blanket
* math/blis: update to the first snapshot working on FreeBSD to support ↵jmd2017-12-123-77/+49
| | | | | | | | | | runtime kernel selection. For amd64, this will now select, if available, an assembly optimized kernel for the CPU architecture blis is running on. The other architectures continue to only use what is now called the generic kernel but in theory arm and power7 assembly optimizations are available. Due to this, remove the old explicit kernel selection. Also switch to use devel/llvm50 as a compiler to actually support all the architectures (and upstream compile flags) properly. This hopefully will also help with getting blis to work on other architectures out of the box. Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D13264
* - Update to 5.41.0 [1]amdmi32017-12-123-2284/+20
| | | | | | | | | - Add LICENSE_FILE - Whitespace fixes - Switch to new test framework PR: 223316 [1] Submitted by: satosi.kimura@nifty.ne.jp [1]
* math/saga: Update 4.1.0 -> 6.1.0bhughes2017-12-115-17/+43
| | | | | | | PR: 223890 Submitted by: Rainer Hurling <rhurlin@gwdg.de> (maintainer) Approved by: robak (mentor) Differential Revision: https://reviews.freebsd.org/D13436
* Fix buildsunpoet2017-12-111-0/+20
| | | | | | PR: 223043 Submitted by: Markus Mann <freebsd-public@it64.de> MFH: 2017Q4
* - Those ports fail to build with python3antoine2017-12-111-3/+2
| | | | - Add some explicit FLAVOR to dependencies where needed
* ogdf fails to build with python3antoine2017-12-091-1/+1
|
* math/nfft: update 3.3.2 -> 3.4.0pi2017-12-083-5/+7
| | | | | | PR: 224163 Relnotes: https://github.com/NFFT/nfft/releases Submitted by: Michael Danilov <mike.d.ft402@gmail.com> (maintainer)
* math/py-keras: Update to 2.1.2swills2017-12-082-4/+4
| | | | | PR: 224154 Submitted by: Neel Chauhan <neel@neelc.org> (maintainer)
* math/py-matplotlib: Allow build for Python 3.xtobik2017-12-071-1/+6
| | | | | | | | | | | | - x11-toolkits/{py-gtk2,py-wxPython28} do not support Python 3.x, so exclude the GTKBACKEND, GTKAGGBACKEND, and WXAGGBACKEND in that case. PR: 213636 Reported by: lbartoletti@tuxfamily.org Submitted by: rsmith@xs4all.nl (based on) Reviewed by: mat Approved by: maintainer timeout Differential Revision: https://reviews.freebsd.org/D13377
* - Update to 5.1.5wen2017-12-062-4/+4
|
* clarence doesn't run with python3antoine2017-12-051-1/+1
|
* math/glpk: update 4.63 -> 4.64, submitter becomes maintainerpi2017-12-053-6/+6
| | | | | | PR: 224082 Changes: https://lists.gnu.org/archive/html/help-glpk/2017-12/msg00000.html Submitted by: Dmitri Goutnik <dg@syrec.org>
* - Update to 0.9.8.5amdmi32017-12-043-11/+4
|
* Add new port math/nfftrodrigo2017-12-047-0/+630
| | | | | | | | | | | | | | | | | | | | | | NFFT is a software library, written in C, for computing non-equispaced fast Fourier transforms and related variations. It implements the following transforms: 1. Non-equispaced fast Fourier transform (NFFT) - forward transform (NFFT), i.e. frequency to time/space domain - adjoint transform (adjoint NFFT), i.e. time/space to frequency domain 2. Generalisations - to arbitrary nodes in time and frequency domain (NNFFT) - to real-valued data, i.e. (co)sine transforms, (NFCT, NFST) - to the sphere S^2 (NFSFT) - to the rotation group (NFSOFT) - to the hyperbolic cross (NSFFT) 3. Generalised inverse transformations based on iterative methods, e.g. CGNR/CGNE PR: 223429 Submitted by: Michael Danilov <mike.d.ft402@gmail.com>
* Update to 0.15sunpoet2017-12-043-5/+5
| | | | | | - Update WWW Changes: https://bitbucket.org/ronaldoussoren/altgraph/src/default/doc/changelog.rst
* Fix configure options for gnustep-maketheraven2017-12-031-1/+1
| | | | | | | We were not setting the flag to select the GNUstep ABI, so were defaulting to using the GCC-compatible version, which was likely to trigger a lot of subtle bugs. This was noticed when C++ exceptions thrown through Objective-C stack frames caused segfaults.
* math/libRmath: Update to version 3.4.3 and add armv[67] to ONLY_FOR_ARCHSjrm2017-12-032-7/+9
|
* Explicitely pass ipython FLAVOR in a few portsantoine2017-12-021-1/+1
|
* math/octave: Set correct USE_LDCONFIG=joneum2017-12-021-8/+8
| | | | | | | PR: 223690 Reported by: joneum Approved by: maintainer timeout (2 weeks) rene (mentor) Differential Revision: https://reviews.freebsd.org/D13245
* math/R: Rename files/extra-patch-src_main_Makefile.in tojrm2017-12-012-0/+1
| | | | | files/patch-src_main_Makefile.in, so that the SONAME for libR is included. This was intended for r455296.
* math/R: Update to version 3.4.3jrm2017-12-013-26/+38
| | | | | | | | | | | | | Other port changes: - Add armv6 and armv7 to ONLY_FOR_ARCHS; armv6 and armv7 were tested by mmel@ and working on 11. - Remove LIBR option and always build the shared library. This was requested by yuri@ and a RFC was posted on ports@ with no response. - Exclude OPENMP option for everything except amd64 and i386. - Turn on OPENMP option by default to match upstream. - Turn off TCLTK option by default. - LLVM, which gets pulled in with FLANG, provides libomp, so only depend on devel/openmp, when GFORTRAN and OPENMP are on.
* Cleanup LIB_DEPENDS on libpngantoine2017-12-012-2/+2
|
* math/py-keras: Update to 2.1.1dbaio2017-12-012-4/+4
| | | | | PR: 223978 Submitted by: Neel Chauhan <neel@neelc.org> (maintainer)
* - Add LICENSEamdmi32017-12-011-3/+4
| | | | - Switch to USES=localbase
* Convert Python ports to FLAVORS.mat2017-11-3050-165/+141
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Ports using USE_PYTHON=distutils are now flavored. They will automatically get flavors (py27, py34, py35, py36) depending on what versions they support. There is also a USE_PYTHON=flavors for ports that do not use distutils but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if using distutils but flavors are not wanted. A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been added to cope with Python ports that did not have the Python PKGNAMEPREFIX but are flavored. USES=python now also exports a PY_FLAVOR variable that contains the current python flavor. It can be used in dependency lines when the port itself is not python flavored. For example, deskutils/calibre. By default, all the flavors are generated. To only generate flavors for the versions in PYTHON2_DEFAULT and PYTHON3_DEFAULT, define BUILD_DEFAULT_PYTHON_FLAVORS in your make.conf. In all the ports with Python dependencies, the *_DEPENDS entries MUST end with the flavor so that the framework knows which to build/use. This is done by appending '@${PY_FLAVOR}' after the origin (or @${FLAVOR} if in a Python module with Python flavors, as the content will be the same). For example: RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} PR: 223071 Reviewed by: portmgr, python Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D12464
* NO_ASM is also needed on armv7.linimon2017-11-301-1/+1
| | | | Approved by: portmgr (tier-2 blanket)
* For ports that are marked BROKEN on armv6, and also fail to build onlinimon2017-11-306-0/+6
| | | | | | | | | | armv7, mark them so. This is part two of a multipart commit to bring armv7 ports to parity with armv6. Approved by: portmgr (tier-2 blanket) Obtained from: lonesome.com -exp run
* - Switch to new test frameworkamdmi32017-11-282-6/+5
| | | | | - Take maintainership - Update WWW
* math/glpk: Update to 4.63yuri2017-11-283-6/+6
| | | | | | | PR: 223884 Submitted by: Dmitri Goutnik <dg@syrec.org> Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13261
* Fix depends, clang38 is provided by devel/llvm38antoine2017-11-271-2/+2
|
* - Update WWWamdmi32017-11-271-1/+1
| | | | Approved by: portmgr blanket
* Update math/py-pandas to 0.21.0tcberner2017-11-264-87/+5
| | | | | PR: 223849 Submitted by: John W. O'Brien <john@saltant.com> (maintainer)
* Don't use MASTER_SITE_SUBDIR when it is not needed.mat2017-11-251-1/+0
| | | | Sponsored by: Absolight
* . Update to 5.2.2.glewis2017-11-246-95/+193
| | | | | | | . Remove most options and configure unconditional support for them. This is now a full featured port of gnuplot. If there is enough interest then I'll creating a 'gnuplot-lite' port for a minimalist version.
* math/pari: Fixed install without threads; Removed MAKE_JOBS_UNSAFE; Added ↵yuri2017-11-233-24/+10
| | | | | | | | | LICENSE_FILE PR: 222041 Submitted by: Anton Yuzhaninov <citrin+pr@citrin.ru> Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13174
* math/mprime: Fix some issues from the previous commitswills2017-11-2311-78/+383
| | | | | | | | | | Put back original creator and whitespace Fix patching Greatly simplify the Makefile Make it LOCALBASE safe Reported by: danfe Pointyhat to: swills
* math/mprime: Update to 28.10swills2017-11-227-43/+291
| | | | | | | | | | | While here: * Set maintainer to submitter * Add License file * Appease portlint by tweaking comment and moving ONLY_FOR_ARCHES PR: 219432 Submitted by: rozhuk.im@gmail.com
* Update IGNORE_WITH_PHPsunpoet2017-11-201-1/+1
|
* New port: math/eprover : Theorem prover for full first-order logic with equalityyuri2017-11-207-0/+119
| | | | | | | PR: 211903 Submitted by: Greg V <greg@unrelenting.technology> Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13150
* math/ambit: Fix the conflict with shells/ambit by adding PKGNAMESUFFIXyuri2017-11-201-0/+2
| | | | | | Reported by: antoine Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13157
* New port: math/ambit: C++ library for tensor product calculationsyuri2017-11-196-0/+94
| | | | | Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13067
* Remove pkg-message about problems with gfortran. The problem has beentijl2017-11-181-18/+0
| | | | | | addressed in r454161. PR: 221127
* - Allow users to change the default Fortran compiler via DEFAULT_VERSIONS.tijl2017-11-182-29/+13
| | | | | | | - Rename USES=fortran:gcc to the more appropriate USES=fortran:gfortran. - Change the options in math/R and math/libRmath so the choice becomes flang or default instead of flang or gfortran. Use default Fortran compiler again on amd64.
* PHP 7.2: Remove bad repocopies.tz2017-11-172-18/+0
| | | | Reported by: adamw
* Add PHP 7.2 RC6tz2017-11-165-0/+38
| | | | | | | | | | | | | Notable changes: - mcrypt module was removed - sodium module was added - sybase_ct artifacts removed Also many PECL ports will not work with this version since some files got renamed. Reviewed by: mat, ale, Rainer Duffner <rainer@ultra-secure.de> Differential Revision: https://reviews.freebsd.org/D12980
* - Pet portlintamdmi32017-11-161-5/+7
| | | | | | | - Use proper command for static library installation - Switch to options helpers Approved by: portmgr blanket
* Fix PKGBASE collision with math/mumpsantoine2017-11-151-0/+1
|
* Upgrade - endly! - to Code_Aster 13.4.0-3.thierry2017-11-1519-96/+589
| | | | | | | | | | | | | Notes: - I have (not yet) succeeded to enable MFront in this version; - it uses math/mumps-edf, repocopied from math/mumps; - cad/scotch is now taken out of the aster tarball; - french/eficas is no more used: to be replaced by "aster-study" in Salome_Meca (the port cad/salome should be resurrected!)
* - Update to 2.6.2.stephen2017-11-122-5/+4
|
* Remove expired port:rene2017-11-115-73/+0
| | | | 2017-04-30 math/bargraph: Unfetchable for more than six months (google code has gone away)
* math/py-keras: update 2.0.8 -> 2.0.9robak2017-11-092-4/+4
| | | | | PR: 223527 Submitted by: Neel Chauhan <neel@neelc.org> (maintainer)
* - Update to 5.8-1.0wen2017-11-092-5/+4
|
* - Update to 0.2.1wen2017-11-092-5/+4
|
* devel/icu: update to 60.1jbeich2017-11-091-1/+1
| | | | | | | Changes: http://site.icu-project.org/download/60 ABI: https://abi-laboratory.pro/tracker/timeline/icu4c/ PR: 223373 Exp-run by: antoine
* Those non default PYTHON options do not build/stage/package, mark themmat2017-11-071-0/+1
| | | | | | BROKEN. Sponsored by: Absolight
* Fix USE_GITHUB usage.mat2017-11-061-1/+0
| | | | Sponsored by: Absolight
* math/alglib: Update to 3.12.0yuri2017-11-052-6/+5
| | | | | Reviewed by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D12946
* math/cadabra2: Update to 2.1.6yuri2017-11-053-7/+7
| | | | | Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D12948
* Update license of ports using MPL (without version)dbaio2017-11-043-3/+3
| | | | | | All ports now should use MPL[10|11|20] license. Approved by: portmgr (blanket)
* PR: 223406dvl2017-11-042-5/+9
| | | | Approved by: lwhsu (maintainer)
* Fix whitespace issues (mixed tab/spaces, alignment) in a few ports.olgeni2017-11-033-3/+3
| | | | This round is @FreeBSD.org residents except teams.
* Upgrade to 6.1.thierry2017-11-022-4/+4
| | | | This fixes the decimal separator bug.
* Merge Linux ncurses-base into linux_base. It's needed by ncurses-libs.tijl2017-11-011-2/+2
|
* Update math/pdal to 1.6tcberner2017-11-013-81/+77
| | | | | | | * bump revision in databases/grass7 PR: 222995 Submitted by: lbartoletti@tuxfamily.org (maintainer)
* Fix whitespace issues (mixed tab/spaces, alignment) in a few ports.olgeni2017-10-314-9/+9
|
* - Add LICENSEwen2017-10-302-0/+4
| | | | | | PR: 223144 Submitted by: yasu@utahime.org Approved by: maintainer
* math/libRmath: Fix error during configure stage due to missing FPICFLAGS.jrm2017-10-291-2/+3
|
* - Attempt to fix build errors in the i386 architecture.stephen2017-10-291-0/+14
| | | | Reported by: http://beefy11.nyi.freebsd.org/data/head-i386-default/p453041_s325049/logs/octave-forge-interval-3.0.0.log
* math/libRmath: Update to version 3.4.2 and add an option on amd64 to choosejrm2017-10-272-7/+25
| | | | the fortran compiler.
* math/R: Use the new flang argument to USES=fortran and patch libR.pc to link thejrm2017-10-271-10/+11
| | | | | | | appropriate BLAS library. PR: 220418 Submitted by: yuri@rawbw.com
* - Update to 2.5.0.stephen2017-10-252-5/+4
|
* - Update to 3.0.0.stephen2017-10-252-5/+4
|
* - Update to 2.1.0.stephen2017-10-252-5/+4
|
* - Update to 2.4.8.stephen2017-10-252-5/+4
|
* Update to 2.81sunpoet2017-10-252-4/+4
| | | | Changes: http://search.cpan.org/dist/Math-Polynomial-Solve/Changes
* - Fix LICENSEamdmi32017-10-242-4/+6
| | | | | | | - Add LICENSE_FILE - Update WWW Approved by: portmgr blanket
* Update to 4.5.0sunpoet2017-10-227-7/+7
| | | | | | - Pet portlint: reorder LICENSE knobs Changes: https://github.com/Unidata/netcdf-c/releases
* multimedia/ffmpeg: update to 3.4jbeich2017-10-212-2/+2
| | | | | | | | | | | | | | | | | | | Notable changes: - i386/amd64 now depend on NASM per https://git.ffmpeg.org/gitweb/ffmpeg.git/commitdiff/4f9297ac3b39 - NETCDF is now MYSOFA but the dependency doesn't exist in ports yet - SCHROEDINGER is gone per https://git.ffmpeg.org/gitweb/ffmpeg.git/commitdiff/220b24c7c9 - DRM, LIBRSVG2, LIBXML2 are new options - ABI isn't completely compatible: some structs have changed Minor cleanup: - Don't pass --disable-{in,out}dev when it's already blocked by disabled dependency - Drop redundant "Enable" from option descriptions - Switch CDIO_DESC to use Mk/bsd.options.desc.mk Changes: https://git.ffmpeg.org/gitweb/ffmpeg.git/blob/n3.4:/Changelog ABI: https://abi-laboratory.pro/tracker/timeline/ffmpeg/ PR: 223057 Exp-run by: antoine
* Update math/openlibm to 0.5.5tcberner2017-10-204-11/+6
| | | | | | | * While here switch to DISTVERSION and shuffle USES upwards. PR: 223081 Submitted by: Iblis Lin <iblis@hs.ntnu.edu.tw> (maintainer)
* Retire WITHOUT_DEBUG flag.madpilot2017-10-151-1/+1
| | | | | | | | | The flag has partial support across the tree, and the same effect can be obtained by using ".undef WITH_DEBUG". Reviewed by: mat, rene Approved by: portmgr (rene) Differential Revision: https://reviews.freebsd.org/D12548
* - Mark BROKEN on amd64wen2017-10-141-0/+2
|
* Update to 1.13.3sunpoet2017-10-133-26/+8
| | | | | | | | | | - Simplify MASTER_SITES - Silence patch messages - Fix symbolic link to avoid absolute path Changes: https://github.com/numpy/numpy/releases PR: 222856 Exp-run by: antoine
* connect math/rexx-regmath to the build.ler2017-10-131-0/+1
| | | | | Reminded by: antoine Pointy Hat to: ler
* New port: math/rexx-regmathler2017-10-1310-0/+407
| | | | | | | regmath contains two different implementations of math libraries for the REXX language. PR: 221573 Submitted by: bob@eager.cx
* - Add CPE information for math/psppcpm2017-10-131-1/+3
| | | | Submitted by: swills via email
* For ports that are explicitly enabled on armv6, also enable themlinimon2017-10-111-1/+1
| | | | | | | on armv7. This has not been tested with an -exp run but should "do no harm". PR: 221894 (partial)
* - Update to 1.0.0wen2017-10-103-4/+5
| | | | - Update WWW
* math/pspp: fix NLS optioncpm2017-10-101-3/+4
| | | | | | | | | - Fix USES=gettext-* when NLS option is not set - Bump PORTREVISION PR: 222831 Reported by: Miroslav Lachman <000.fbsd@quip.cz> MFH: 2017Q4 (blanket)
* - Update to 0.12.0amdmi32017-10-095-57/+21
| | | | | | | | | - Chase move to bitbucket - Pass maintainership to submitter PR: 217460 Submitted by: mikael.urankar@gmail.com, lightside@gmx.com Reported by: godevilove@ya.ru
* Mark BROKEN: fails to buildantoine2017-10-091-0/+2
| | | | | | | | | /bin/sh ../../../build-aux/ylwrap xre_parse.yy y.tab.c xre_parse.cc y.tab.h `echo xre_parse.cc | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output xre_parse.output -- byacc -d byacc: e - line 75 of "/wrkdirs/usr/ports/math/hfst/work/hfst-c187d5a/libhfst/src/parsers/xre_parse.yy", syntax error %name-prefix="xre" Reported by: pkg-falout MFH: 2017Q4
* Defining both LICENSE_FILE_COMMERCIAL and LICENSE_TEXT_COMMERCIAL is notantoine2017-10-081-2/+2
| | | | | | allowed Reported by: pkg-fallout
* Update to 2.0.4sunpoet2017-10-072-4/+4
| | | | Changes: https://pecl.php.net/package-changelog.php?package=Bitset
* Update to 3.0.1sunpoet2017-10-072-4/+4
| | | | Changes: https://pecl.php.net/package-changelog.php?package=Bitset
* math/clblast: Update to 1.1.0 release.jmd2017-10-032-4/+4
| | | | | | | | Improvements include more GPUs supported by the included database and better tuners for unknown GPUs. Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D12558
* - Update to 1.3.1tota2017-10-012-4/+5
|
* - Update to 0.19jadawin2017-10-012-4/+4
| | | | | | Log: If '.' is part of the digit set, from_base() now deals it properly No code changes between 0.18 to 0.19 but we were in 0.17 due to my late commit
* math/R: Update to version 3.4.2jrm2017-09-303-25/+19
| | | | | | | | Also - Build Fortran code with flang by default on amd64. - Remove LTO option. Upstream does not turn it on by default, it has caused problems with each GCC upgrade, and any benefit is unclear. - Do not specify USES=compiler:openmp since that just forces GCC.
* - Update to 1.1-14tota2017-09-292-4/+4
|
* - Update to 1.5.1tota2017-09-293-5/+12
| | | | - Update pkg-descr
* math/tomsfastmath: update to 0.13.1gahr2017-09-283-25/+35
| | | | | | Release notes: https://github.com/libtom/tomsfastmath/releases/tag/v0.13.1 https://github.com/libtom/tomsfastmath/releases/tag/v0.13.0
* - Update to 1.1.1tota2017-09-282-6/+6
| | | | - Add "compiles" argument to USES=cran
* - Update to 8.2tota2017-09-282-4/+4
|
* Bump PORTREVISION in ports depending on archivers/libzip.rakuco2017-09-281-0/+1
| | | | | | | | libzip was updated to 1.3.0 in r450774, and its SOVERSION went from .4 to .5 after the removal of zip_archive_set_tempdir(). All dependent ports continue to build fine without that symbol. PR: 222638
* math/tomsfastmath: build PICgahr2017-09-271-1/+2
|
* Update to 0.7.5bapt2017-09-252-4/+4
|
* Update to version 3.13.0.demon2017-09-256-44/+82
|
* Update to version 1.6.3.demon2017-09-253-32/+46
|
* devel/boost-*: update to 1.65.1jbeich2017-09-2517-17/+17
| | | | | | | | | Changes: http://www.boost.org/users/history/version_1_65_1.html PR: 218835 Approved by: maintainer timeout (1.65.1: 2 weeks; 1.65.0: 1 month) Tested by: jhibbits (on powerpc64, earlier version) Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D11582
* devel/boost-*: enable C++11 featuresjbeich2017-09-2517-17/+17
| | | | | | | | PR: 218835 Obtained from: https://github.com/DragonFlyBSD/DeltaPorts/pull/690 Approved by: maintainer timeout (2 months) Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D11582
* devel/icu: update to 59.1jbeich2017-09-251-1/+1
| | | | | | | | | - Temporarily keep C++98 working in consumers for Clang's default -std= Changes: http://site.icu-project.org/download/59 PR: 218788 Submitted by: takefu@airport.fm, dcarmich@dcarmichael.net (early version) Exp-run by: antoine
* math/hfst: unbreak with gcc7jbeich2017-09-252-1/+6
| | | | | | | PR: 222567 Submitted by: rakuco Obtained from: upstream (hfst-3.13.0) Approved by: portmgr blanket
* Point WWW to the project's current location.rakuco2017-09-251-1/+1
|
* Update to upstream version 5.0.387.0, add pkg-message on linprocfsriggs2017-09-243-5/+11
| | | | | | | | While on it: - Pet portlint PR: 222395 Submitted by: uzsolt@uzsolt.hu (maintainer)
* Remove USES=execinfo.mat2017-09-221-1/+1
| | | | | | | PR: 220271 Submitted by: mat (review), Yasuhiro KIMURA (PR) Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D11488
* Remove bits of the MASTER_SITES, it was not returning anything.mat2017-09-221-2/+3
| | | | Sponsored by: Absolight
* Update MASTER_SITES usagesunpoet2017-09-221-2/+1
|
* Add some backup sites for math/mpfradamw2017-09-221-1/+3
| | | | | | The mpfr.org site is down, and there's no backup mirrors set. Distcache doesn't have the tarball, so the port is unfetchable Add MASTER_SITE_GNU as a backup.
* - Update WWWamdmi32017-09-211-1/+1
| | | | Approved by: portmgr blanket
* Update to 3.1.6 release.ale2017-09-213-12/+7
|
* Rmath/p5-Math-Derivative: Update version 0.04=>1.01bofh2017-09-202-3/+4
| | | | Relnotes: http://cpansearch.perl.org/src/JGAMBLE/Math-Derivative-1.01/Changes
* Modernise port to allow for new features in future (e.g. CilkPlus support)riggs2017-09-175-34/+36
| | | | | | | | | | | | | Details: - Use standard HAS_CONFIGURE instead of rolling our own - Use blaslapack - Regenerate patches with "make makepatch". - Add LICENSE - Fortran is used as linker but all the code is in C so use CFLAGS instead of FFLAGS. PR: 214963 Submitted by: pfg
* Update tbb to 2018 and bump dependent ports' revisionsmartymac2017-09-171-1/+1
|
* math/libtommath: fix PLIST, bump PORTREVISIONgahr2017-09-161-3/+4
|
* Update to 2.6.4sunpoet2017-09-162-4/+4
| | | | Changes: https://github.com/pydata/numexpr/blob/master/RELEASE_NOTES.rst
* Upgrade to 6.0.thierry2017-09-162-9/+5
| | | | Changelog at <https://sourceforge.net/projects/mathmod/files/MathMod-6.0/>.
* math/libtommath: update to 1.0.1, take maintainershipgahr2017-09-154-59/+55
|
* Fix license information for portgs that use "the same license as Perl".mat2017-09-1566-66/+66
| | | | Sponsored by: Absolight
* Update to 2.6.3sunpoet2017-09-152-6/+6
| | | | | | - Use USES=dos2unix Changes: https://github.com/pydata/numexpr/blob/master/RELEASE_NOTES.rst
* - Move QT5 as an optionwen2017-09-133-16/+32
| | | | | | | - Add missing DEPENDS PR: 222177 Submitted by: lbartoletti@tuxfamily.org
* Chase Emacs updateashish2017-09-123-1/+3
|
* Sort categories Makefiles properly.mat2017-09-111-2/+2
| | | | Sponsored by: Absolight
* - Update WWWamdmi32017-09-111-1/+1
| | | | Approved by: portmgr blanket
* - Update to 0.99.14.2tota2017-09-112-4/+4
|
* Bump PORTREVISION for ports depending on the canonical version of GCCgerald2017-09-11179-148/+179
| | | | | | | | | | | | | | (via Mk/bsd.default-versions.mk and lang/gcc) which has moved from GCC 5.4 to GCC 6.4 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang, c++14-lang, c++0x, c11, or gcc-c++11-lib. PR: 219275
* - Update to 3.1.4.stephen2017-09-112-4/+4
|
* Some typo fixes and whitespace cleanup for pkg-descr files.olgeni2017-09-111-1/+1
|
* - Add new port: math/R-cran-recipestota2017-09-104-0/+44
| | | | | | | | | | | An extensible framework to create and preprocess design matrices. Recipes consist of one or more data manipulation and analysis "steps". Statistical parameters for the steps can be estimated from an initial data set and then applied to other data sets. The resulting design matrices can then be used as inputs into statistical or machine learning models. WWW: https://cran.r-project.org/web/packages/recipes/
* - Add new port: math/R-cran-gowertota2017-09-104-0/+25
| | | | | | | | Compute Gower's distance (or similarity) coefficient between records. Compute the top-n matches between records. Core algorithms are executed in parallel on systems supporting OpenMP. WWW: https://cran.r-project.org/web/packages/gower/
* - Add new port: math/R-cran-RcppRolltota2017-09-104-0/+30
| | | | | | | | | Provides fast and efficient routines for common rolling / windowed operations. Routines for the efficient computation of windowed mean, median, sum, product, minimum, maximum, standard deviation and variance are provided. WWW: https://cran.r-project.org/web/packages/RcppRoll/
* - Add new port: math/R-cran-ddalphatota2017-09-104-0/+36
| | | | | | | | | | | | | Contains procedures for depth-based supervised learning, which are entirely non-parametric, in particular the DDalpha-procedure (Lange, Mosler and Mozharovskyi, 2014). The training data sample is transformed by a statistical depth function to a compact low-dimensional space, where the final classification is done. It also offers an extension to functional data and routines for calculating certain notions of statistical depth functions. 50 multivariate and 5 functional classification problems are included. WWW: https://cran.r-project.org/web/packages/ddalpha/
* - Add new port: math/R-cran-robustbasetota2017-09-104-0/+31
| | | | | | | | | | "Essential" Robust Statistics. Tools allowing to analyze data with robust methods. This includes regression methodology including model selections and multivariate statistics where we strive to cover the book "Robust Statistics, Theory and Methods" by 'Maronna, Martin and Yohai'; Wiley 2006. WWW: https://cran.r-project.org/web/packages/robustbase/
* Unbreak INDEXantoine2017-09-101-3/+3
|
* - Add new port: math/R-cran-DEoptimRtota2017-09-104-0/+29
| | | | | | | | | | | | Differential Evolution (DE) stochastic algorithms for global optimization of problems with and without constraints. The aim is to curate a collection of its state-of-the-art variants that (1) do not sacrifice simplicity of design, (2) are essentially tuning-free, and (3) can be efficiently implemented directly in the R language. Currently, it only provides an implementation of the 'jDE' algorithm by Brest et al. (2006) <doi:10.1109/TEVC.2006.872133>. WWW: https://cran.r-project.org/web/packages/DEoptimR/
* - Add new ports: math/R-cran-dimRedtota2017-09-104-0/+29
| | | | | | | A collection of dimensionality reduction techniques from R packages and provides a common interface for calling the methods. WWW: https://cran.r-project.org/web/packages/dimRed/
* - Add new port: math/R-cran-DRRtota2017-09-104-0/+29
| | | | | | | An Implementation of Dimensionality Reduction via Regression using Kernel Ridge Regression. WWW: https://cran.r-project.org/web/packages/DRR/
* - Add new port: math/R-cran-CVSTtota2017-09-104-0/+40
| | | | | | | | | | | | | | | | | | | This package implements the fast cross-validation via sequential testing (CVST) procedure. CVST is an improved cross-validation procedure which uses non-parametric testing coupled with sequential analysis to determine the best parameter set on linearly increasing subsets of the data. By eliminating underperforming candidates quickly and keeping promising candidates as long as possible, the method speeds up the computation while preserving the capability of a full cross-validation. Additionally to the CVST the package contains an implementation of the ordinary k-fold cross-validation with a flexible and powerful set of helper objects and methods to handle the overall model selection process. The implementations of the Cochran's Q test with permutations and the sequential testing framework of Wald are generic and can therefore also be used in other contexts. WWW: https://cran.r-project.org/web/packages/CVST/
* - Add new port: math/R-cran-ipredtota2017-09-104-0/+29
| | | | | | | | Improved predictive models by indirect classification and bagging for classification, regression and survival problems as well as resampling based estimators of prediction error. WWW: https://cran.r-project.org/web/packages/ipred/
* - Add new port: math/R-cran-prodlimtota2017-09-104-0/+30
| | | | | | | | Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. Kaplan-Meier and Aalen-Johansen method. WWW: https://cran.r-project.org/web/packages/prodlim/
* - Add new port: math/R-cran-lavatota2017-09-104-0/+27
| | | | | | Estimation and simulation of latent variable models. WWW: https://cran.r-project.org/web/packages/lava/
* Convert USES of tcl or tk from 84+ to 85+gahr2017-09-071-1/+2
| | | | | This shouldn't change anything in the default case because tcl86 is chosen anyway.
* - Update to 0.6-15tota2017-09-062-4/+4
|
* - Update to 0.5-4tota2017-09-062-6/+7
| | | | - Update LICENSE
* Fix packaging with python3*, PYTHON_PYOEXTENSION and py3kplist should notantoine2017-09-061-194/+194
| | | | | | | be used together PR: 220986 With hat: portmgr
* - Update to 0.4-6tota2017-09-062-4/+4
|
* - Update to 0.7.960.1.2tota2017-09-062-4/+4
|
* math/z3: Patch to add SONAME to shared libraryjrm2017-09-052-3/+5
| | | | | | | | Also ensure that python is available at build time when the PYTHON option (for python bindings) is off. PR: 221321 Submitted by: 6yearold@gmail.com (maintainer)
* math/R: Do not specify minimum tk versionjrm2017-09-051-5/+5
| | | | | | | | | | | Specifying TCLTK_USES=tk:84+ was pulling in version 8.4 for package builds on cluster, however the Tcl/Tk 8.4 ports are being deprecated. Simply using TCLTK_USES=tk pulls in the default version. [1] While here, silence a portlint warning about the location of ONLY_FOR_ARCHS and use DISTVESION instead of PORTVERSION. Reported by: gahr [1]
* - Update to 1.2.9tota2017-09-052-4/+4
|
* - Update to 1.0.1cpm2017-08-302-4/+4
| | | | | | | | | | | | Changes from 1.0.0 to 1.0.1: http://lists.gnu.org/archive/html/pspp-announce/2017-08/msg00003.html MFH: 2017Q3 Security: CVE-2017-12958 Security: CVE-2017-12959 Security: CVE-2017-12960 Security: CVE-2017-12961
* - Update to 0.99.13.2tota2017-08-302-4/+8
|
* math/py-keras: Update to 2.0.8dbaio2017-08-302-7/+7
| | | | | | | While here, silence portlint warning about order of USES/USE_*. PR: 221870 Submitted by: Neel Chauhan <neel@neelc.org> (maintainer)
* Change MAINTAINER email to my new FreeBSD emailpizzamig2017-08-291-1/+1
| | | | | | Approved by: lme (mentor) Approved by: olivier (mentor) Differential Revision: https://reviews.freebsd.org/D12150
* - Update WWWamdmi32017-08-291-1/+1
|
* - Update to 1.1.1wen2017-08-282-4/+4
|
* - Update to 2.4-0tota2017-08-282-5/+5
| | | | - Fix LICENSE
* . Update to 5.0.7.glewis2017-08-272-4/+4
|
* - Update to 1.2.0.stephen2017-08-262-4/+4
|
* Upgrade OpenBLAS to 0.2.20:truckman2017-08-264-25/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Fixed several thread race and locking bugs * Fixed default LAPACK optimization level * Updated LAPACK to 3.7.0 * Power - Optimizations for Power9 - Fixed several Power8 assembly bugs * ARM - New optimized Vulcan and ThunderX2T99 targets - Support for ARMV7 SOFT_FP ABI (make ARM_SOFTFP_ABI=1) - Detect all cpu cores including offline ones - Fix compilation with CLANG * MIPS - Fixed several threading issues - Fix compilation with CLANG * x86_64 - Detect Intel Bay Trail and Apollo Lake - Detect Intel Sky Lake and Kaby Lake - Detect Intel Knights Landing - Detect AMD A8, A10, A12 and Ryzen - Fix cmake builds for Haswell and related cpus - Fix building for Sandybridge with CLANG 3.9 Pet portlint (USES vs. USE) PR: 221633 Submitted by: truckman Approved by: phd_kimberlite@yahoo.co.jp (maintainer)
* Bump PORTREVISION to reflect print/gl2ps changes.araujo2017-08-242-2/+2
| | | | | PR: ports/218399 (based on) Submitted by: emaste
* Update to 0.43sunpoet2017-08-232-4/+4
| | | | Changes: http://search.cpan.org/dist/Math-GMPf/CHANGES
* Remove USES=objc:compiler, R doesn't use any objective c code and this breaksantoine2017-08-231-2/+2
| | | | | | | R-Cran-* on FreeBSD 10 Reported by: pkg-fallout With hat: portmgr
* Switch WWW to https.rakuco2017-08-231-1/+1
|
* - Update to 1.0.0cpm2017-08-225-143/+26
| | | | | | | | | | | | | | | | | | | | | - Cosmetic fix - Update WWW in pkg-descr Changes from 0.10.2 to 0.11.0: http://lists.gnu.org/archive/html/pspp-announce/2017-08/msg00000.html Changes from 0.11.0 to 1.0.0: http://lists.gnu.org/archive/html/pspp-announce/2017-08/msg00002.html MFH: 2017Q3 Security: CVE-2017-10791 Security: CVE-2017-10792 Security: CVE-2017-12958 Security: CVE-2017-12959 Security: CVE-2017-12960 Security: CVE-2017-12961
* - Update to 1.1.2tota2017-08-222-9/+10
| | | | - Fix LICENSE
* Update to 0.7.4bapt2017-08-213-11/+11
|
* Don't add the distfile twice.mat2017-08-212-7/+3
| | | | | | | | | | | | | | | | | | This fixes a fetch error: => numpy-numpy-v1.13.1_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/numpy/numpy/tar.gz/v1.13.1?dummy=/numpy-numpy-v1.13.1_GH0.tar.gz fetch: 4336552: No such file or directory numpy-numpy-v1.13.1_GH0.tar.gz 0 B 0 Bps => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/numpy-numpy-v1.13.1_GH0.tar.gz fetch: 4336552: No such file or directory => Couldn't fetch it - please try to retrieve this => port manually into /portdistfiles/ and try again. Sponsored by: Absolight
* Update GNUstep core libraries.theraven2017-08-211-1/+1
| | | | | | | | | | Update the default Objective-C compiler. Fix various build failures in GNUstep ports from newer versions of the GNUstep core libraries and from changes to GNUstep Make. Update various ports that use GNUstep and bump the portrevision of the ones that haven't had a new release.
* A cross-platform numerical analysis and data processing library. It supportswen2017-08-215-0/+62
| | | | | | | | | | | | | | | | | | several programming languages (C++, C#, Pascal, VBA) and several operating systems. ALGLIB features include: * Data analysis (classification/regression, including neural networks) * Optimization and nonlinear solvers * Interpolation and linear/nonlinear least-squares fitting * Linear algebra (direct algorithms, EVD/SVD), direct and iterative linear solvers, Fast Fourier Transform and many other algorithms (numerical integration, ODEs, statistics, special functions) This is a free edition of alglib. WWW: http://www.alglib.net PR: 221681 Submitted by: yuri@rawbw.com
* - Update MASTER_SITES, now get source from github and doc from docs.scipy.orgwen2017-08-212-17/+23
| | | | (Based on PR/181285)
* Update to 3.36sunpoet2017-08-202-4/+4
| | | | Changes: http://search.cpan.org/dist/Math-MPFR/CHANGES
* Pet portlint: move BROKEN_* upwardsunpoet2017-08-201-2/+2
|
* math/pdal: update 1.4.0 -> 1.5.0pi2017-08-194-24/+53
| | | | | | PR: 221578 Relnotes: https://github.com/PDAL/PDAL/releases/tag/1.5.0 Submitted by: lbartoletti@tuxfamily.org (maintainer)
* math/gretl: Fix R dependency option (causing build failure)swills2017-08-191-1/+1
| | | | | PR: 220729 Submitted by: Beeblebrox <zaphod@berentweb.com>
* math/amath: Update to 1.8.3swills2017-08-182-4/+4
| | | | | PR: 221034 Submitted by: Carsten Larsen <cs@innolan.dk> (maintainer)
* math/fxt: Update to 2017.07.25swills2017-08-182-4/+4
| | | | | PR: 221042 Submitted by: Jov <amutu@amutu.com> (maintainer)
* math/maxima: Update to 5.40.0swills2017-08-183-9/+129
| | | | | PR: 221179 Submitted by: satosi.kimura@nifty.ne.jp
* - Update to 3.4.0wen2017-08-162-12/+18
| | | | | | | | | - Support Python <= 3.5 - Add pyembree dependency - Fix license PR: 221454 Submitted by: yuri@rawbw.com(maintainer)
* Update to 0.7.3bapt2017-08-162-4/+4
|
* - Update to 1.13.1wen2017-08-165-219/+218
| | | | | | PR: 220986 Submitted by: wen@(myself) Exp-run by: antoine@
* math/clblast: Update to release 1.0.0.jmd2017-08-162-4/+4
| | | | | | Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D12028
* math/ceres-solver: pacify portlint after r447891jbeich2017-08-131-3/+3
|
* math/ceres-solver: update to 1.13.0jbeich2017-08-132-5/+9
| | | | Changes: http://ceres-solver.org/version_history.html
* Update to 1.11sunpoet2017-08-132-4/+4
| | | | Changes: http://search.cpan.org/dist/Math-Utils/Changes
* math/dynare: update 4.4.3 -> 4.5.1pi2017-08-137-353/+518
| | | | | | PR: 221342 Relnotes: https://forum.dynare.org/t/release-of-dynare-4-5-1/10431 Submitted by: Fernando Apesteguia <fernando.apesteguia@gmail.com> (maintainer)
* math/dynare: added patches I missed in last commitpi2017-08-134-1/+75
| | | | | PR: 221316 Submitted by: Fernando Apesteguia <fernando.apesteguia@gmail.com> (maintainer)
generated by cgit (git 2.34.1) at 2025-03-10 08:49:58 +0800