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* Add optional dependency on kdebase3makc2010-05-232-4/+14
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* Chase devel/goffice update.kwm2010-05-221-2/+2
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* - Fix build, abinit builds with science/netcdf3-ftnlwhsu2010-05-201-2/+2
| | | | | | Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> Approved by: maho Notified by: pav
* - Since we have netcdf3-ftn, remove netcdf3 part from Makefile.lwhsu2010-05-201-8/+1
| | | | | Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> kVS: ----------------------------------------------------------------------
* Add netcdf3-ftn , netCDF (network Common Data Form), with Fortranlwhsu2010-05-202-0/+19
| | | | | | support. Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net>
* - Fix build problem caused by the recent textproc/hs-tagsoup updatepgj2010-05-203-2/+65
| | | | | | | | - Port PORTREVISION - Tidy up pkg-descr Reported by: LambdaBSD-exp Approved by: jacula (maintainer)
* The massXpert project aims at providing (bio)chemists with a softwarewen2010-05-205-0/+277
| | | | | | | | | | | | | | | | | | | | | | | package allowing the following: * User-specific atom definitions and polymer chemistry definitions; * Powerful sequence editing with user-defined glyphs for each monomer and monomer chemical modification. Multi-region selections; * Polymer sequence chemical/enzymatic cleavage; * Intramolecular cross-linking, like disulfide bonds with total resolution of the peptides generated upon enzymatic cleavage; * Gas-phase fragmentation of oligomers; * Mass-to-charge ratio calculations with inline change of ionization agent; * Calculation of net electrical charge and of isoelectric point (even by taking into account monomer modifications if polymer is a protein); * Simulation of isotopic patterns for any chemical formula and z charge; * A number of plugins allow 1) translation of the sequence from one format to another (using a dictionary, like between the 1-letter code and the 3-letter code of proteins) 2) conversion of number format according to any localized number format 3) sort mass lists. PR: ports/146564 Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com>
* PyNN(pronounced 'pine') is a simulator-independent language forwen2010-05-195-0/+171
| | | | | | building neuronal network models. WWW: http://neuralensemble.org/trac/PyNN
* - Remove pyNN and re-add as pynnwen2010-05-195-171/+0
| | | | Reviewed by: danfe@
* PyNN(pronounced 'pine') is a simulator-independent language forwen2010-05-185-0/+171
| | | | | | | | | building neuronal network models. WWW: http://neuralensemble.org/trac/PyNN PR: ports/146664 Submitted by: Ju Pengfei <jupengfei@gmail.com>
* - Fix duplicated LATEST_LINKlwhsu2010-05-162-1/+3
| | | | | PR: ports/146620 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
* - Add netcdf 4.x supportlwhsu2010-05-151-1/+8
| | | | | PR: ports/146416 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
* - Add option FORTRANlwhsu2010-05-152-18/+37
| | | | | | | | | - Recall SZIP, fix typo (LIB_DEPEND -> LIB_DEPENDS) - Sort pkg-plist - Space/Tab twiddle PR: 146416 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
* - Update MASTER_SITESlwhsu2010-05-153-62/+14
| | | | | | | | | | - Simplify NOPORTDOCS patch - Remove NOPORTEXAMPLES section - Remove unnecessary post-install: target - Remove patch for fortran/cfortran.h PR: ports/146415 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
* - Update to 3.3.0wen2010-05-132-5/+5
| | | | - Reset maintainer
* Introduce a new (and hopefully better) ports infrastructure for Haskell Cabalpgj2010-05-132-125/+59
| | | | | | ports which makes possible the direct translation of Cabal package descriptions to FreeBSD ports. It promises both easier addition and maintenance for Cabal-based ports.
* Bddsolve is a BDD-based tool for solving satisfiability and reachabilitybeat2010-05-125-0/+50
| | | | | | | | problems. It uses the BDD package Buddy as a backend. WWW: http://www.win.tue.nl/~wieger/bddsolve/ Submitted by: ed@
* Presenting GNOME 2.30.1 for FreeBSD. The offical release notes for thiskwm2010-05-111-0/+18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | release can be found at http://library.gnome.org/misc/release-notes/2.30/ . This release brings initial PackageKit support, Upower (replaces power management part of hal), cuse4bsd integration with HAL and cheese, and a faster Evolution. Sadly GNOME 2.30.x will be the last release with FreeBSD 6.X support. This will also be the last of the 2.x releases. The next release will be the highly-anticipated GNOME 3.0 which will bring with it a new UI experience. Currently, there are a few bugs with GNOME 2.30 that may be of note for our users. Be sure to consult the UPGRADING note or the 2.30 upgrade FAQ at http://www.freebsd.org/gnome/docs/faq230.html for specific upgrading instructions, and the up-to-date list of known issues. This release features commits by avl, ahze, bland, marcus, mezz, and myself. The FreeBSD GNOME Team would like to thank Anders F Bjorklund for doing the initual packagekit porting. And the following contributors & testers for there help with this release: Eric L. Chen Vladimir Grebenschikov Sergio de Almeida Lenzi DomiX walder crsd Kevin Oberman Michal Varga Pavel Plesov Bapt kevin and ITetcu for two exp-run PR: ports/143852 ports/145347 ports/144980 ports/145830 ports/145511
* - Fixed WWW: linkglarkin2010-05-051-1/+1
| | | | Submitted by: sunpoet@sunpoet.net (via email)
* - Update to 1.4.3lwhsu2010-05-054-18/+25
| | | | | | | - Update MASTER_SITES, WWW PR: ports/146326 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
* - Added missing pkg-plist entryglarkin2010-05-051-0/+1
| | | | Reported by: QAT
* - Update to 1.8.4glarkin2010-05-052-9/+16
| | | | | | PR: ports/144782 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> Approved by: koziol@hdfgroup.org (maintainer, implicit, timeout - 49 days)
* - Mark BROKEN on sparc64pav2010-05-041-0/+4
| | | | | PR: ports/146127 Submitted by: Chris Petrik <chris@officialunix.com> (maintainer)
* Trying to chase Zlib's upgrade in -CURRENT.thierry2010-05-011-0/+24
| | | | | Reported by: pointyhat via droso Seen with: delphij
* - Update to 1.0.0clsung2010-04-283-10/+26
| | | | | PR: ports/144129 Submitted by: maintainer (Shin'ya Murakami)
* - Update to 0.7.2wen2010-04-262-4/+4
| | | | | | PR: ports/146008 Submitted by: Wen Heping (myself) Approved by: maintainer
* Upgrade to 3.5.1.thierry2010-04-262-5/+4
| | | | | Changelog at <http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/changelog.en.html#3.5.1>.
* Update to 1.9.1makc2010-04-258-14/+104
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* - Update to 4.1.1wen2010-04-224-33/+51
| | | | | PR: ports/145923 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer)
* - Update to 0.53clsung2010-04-203-19/+4
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* - Update to 0.9.1wen2010-04-122-4/+4
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* - Requires GCC 4.x only if we are on 6.xrafan2010-04-071-2/+7
| | | | | PR: ports/145255 Submitted by: Chris Petrik <chris at officialunix.com> (maintainer)
* - Update to 0.25sylvio2010-04-062-4/+4
| | | | | | PR: ports/145350 Submitted by: Steve Wills <steve@mouf.net> (maintainer) Approved by: itetcu (mentor, implicit)
* Update to 2.91 which includes a new rewritten Python interfacerafan2010-04-056-32/+14
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* - Chase math/vtk5 updategahr2010-04-032-3/+3
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* Perl modules for molecular chemistrymiwi2010-04-026-0/+116
| | | | | | | WWW: http://search.cpan.org/dist/PerlMol/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Perl module which parses a SMILES (Simplified Molecular Input Line Entrymiwi2010-04-025-0/+45
| | | | | | | | | Specification) string. WWW: http://search.cpan.org/dist/Chemistry-File-SMILES/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Perl module implements an object class for representing internalmiwi2010-04-025-0/+45
| | | | | | | | | | coordinates and provides methods for converting them to Cartesian coordinates. WWW: http://search.cpan.org/dist/Chemistry-InternalCoords/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification)miwi2010-04-029-0/+85
| | | | | | | | | | string, generating a Chemistry::Pattern object. It is a file I/O driver for the PerlMol toolkit. WWW: http://search.cpan.org/dist/Chemistry-File-SMARTS/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Perl module which generates a three-dimensional molecular structure from amiwi2010-04-025-0/+47
| | | | | | | | | | connection table, such as that obtained by a 2D representation of the molecule or from a SMILES string. WWW: http://search.cpan.org/dist/Chemistry-3DBuilder/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net
* SLN linear notation parser/writermiwi2010-04-025-0/+46
| | | | | | | WWW: http://search.cpan.org/dist/Chemistry-File-SLN/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification)miwi2010-04-021-0/+1
| | | | | | | | | | string, generating a Chemistry::Pattern object. It is a file I/O driver for the PerlMol toolkit. WWW: http://search.cpan.org/dist/Chemistry-File-SMARTS/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* MOPAC 6 input file reader/writermiwi2010-04-025-0/+39
| | | | | | | WWW: http://search.cpan.org/dist/Chemistry-File-Mopac/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Explicit chemical reactionsmiwi2010-04-025-0/+42
| | | | | | | WWW: http://search.cpan.org/dist/Chemistry-Raction/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Match molecule by formulamiwi2010-04-025-0/+39
| | | | | | | WWW: http://search.cpan.org/dist/Chemistry-ForumulaPattern/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Select atoms in macromoleculemiwi2010-04-025-0/+43
| | | | | | | WWW: http://search.cpan.org/dist/Chemistry-MidasPattern/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Perl molecular awk interpretermiwi2010-04-025-0/+43
| | | | | | | WWW: http://search.cpan.org/dist/Chemistry-Mok/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* XYZ molecule format reader/writermiwi2010-04-025-0/+39
| | | | | | | WWW: http://search.cpan.org/dist/Chemistry-File-XYZ/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Generate VRML models for moleculesmiwi2010-04-025-0/+36
| | | | | | | WWW: http://search.cpan.org/dist/Chemistry-File-VRML/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Perl module which provides some basic methods for representing a ring.miwi2010-04-025-0/+39
| | | | | | | WWW: http://search.cpan.org/dist/Chemistry-Ring/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Perl module which contains the exact mass data from the table of the isotopes.miwi2010-04-025-0/+34
| | | | | | | WWW: http://search.cpan.org/dist/Chemistry-Isotope/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Perl module which implements basic pattern matching for molecules.miwi2010-04-025-0/+39
| | | | | | | WWW: http://search.cpan.org/dist/Chemistry-Pattern/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Perl module which provides functions for "canonicalizing" a molecularmiwi2010-04-025-0/+38
| | | | | | | | | | structure; that is, to number the atoms in a unique way regardless of the input order. WWW: http://search.cpan.org/dist/Chemistry-Canonicalize/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Perl module which provides functions for detecting the bonds in a molecule frommiwi2010-04-025-0/+41
| | | | | | | | | | its 3D coordinates by using simple cutoffs, and for guessing the formal bond orders. WWW: http://search.cpan.org/dist/Chemistry-Bond-Find/ PR: ports/145143 Submitted by: Steve Wills <steve at mouf.net>
* Not for powerpc, either.linimon2010-04-011-1/+1
| | | | Hat: portmgr
* - fix build for png-1.4.1dinoex2010-03-301-0/+4
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* - Update to 3.2.0wen2010-03-302-4/+4
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* - fix build for png-1.4.1dinoex2010-03-301-0/+4
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* - Bump PORTREVISION to chase the update of math/gslwen2010-03-297-13/+14
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* - Bump Magick++, MagickWand or MagickCore dependencymm2010-03-291-2/+2
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* - update to 1.4.1dinoex2010-03-2846-44/+47
| | | | | Reviewed by: exp8 run on pointyhat Supported by: miwi
* - Chase x11-toolkits/fltk updategahr2010-03-243-13/+8
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* Mark as broken on sparc64: fails to compile.linimon2010-03-221-1/+7
| | | | Hat: portmgr
* - Update to 0.10.12pav2010-03-163-16/+4
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* Chase goffice update.marcus2010-03-141-2/+2
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* - The maintainer reappearedpav2010-03-141-1/+1
| | | | Requested by: the maintainer
* - Update to 2.0.4.6dhn2010-03-122-4/+4
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* - Update to 2.1.14miwi2010-03-092-9/+16
| | | | | PR: 144428 Submitted by: Ports Fury
* - Mark BROKEN: does not compilepav2010-03-031-0/+2
| | | | | Reported by: pointyhat Feature safe: yes
* Update to 3.6.2makc2010-02-274-30/+3203
| | | | | | | | | | Pass maintainership to submitter Mark MAKE_JOBS_SAFE PR: ports/144260 Submitted by: Stas Timokhin <devel at stasyan.com> Feature safe: yes
* - Update to 3.1.3wen2010-02-252-4/+4
| | | | Feature safe: yes
* - Remove comments from IGNORE section. Left in by mistake with last commit.wxs2010-02-231-4/+4
| | | | Feature safe: yes
* - Update to 1.8.7wxs2010-02-2212-451/+1199
| | | | | | | | - Pass maintainer to submitter PR: ports/142513 Submitted by: Ben Kaduk <kaduk@mit.edu> Feature safe: yes
* Not for ia64, either.linimon2010-02-171-1/+1
| | | | Feature safe: yes
* Fix SMP run on amd64, and bump port revisionmaho2010-02-172-1/+2
| | | | | Submitted by: Katsuya KANDA Feature safe: yes
* Build fix with gotoblas.maho2010-02-161-4/+4
| | | | Feature safe: yes.
* Fix build with recent update of gotoblas(2).maho2010-02-161-5/+4
| | | | Feature safe: yes
* Chase the goffice 0.8.0 update.marcus2010-02-151-3/+3
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* The HDF Java Products include a visual tool for browsing and editing HDFmiwi2010-02-135-0/+140
| | | | | | | | | | files, a Java package providing an object-oriented interface to HDF data objects, and Java Native Interfaces to the standard HDF libraries. WWW: http://www.hdfgroup.org/hdf-java-html/index.html PR: ports/143859 Submitted by: rfarmer at predatorlabs.net
* - Update to 0.9wen2010-02-102-6/+5
| | | | - Update my mail address to FreeBSD
* - Update to 1.4.1miwi2010-02-092-14/+24
| | | | | PR: 143516 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer)
* - update to jpeg-8dinoex2010-02-0544-35/+46
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* - Update to 1.2.0wen2010-02-033-10/+64
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* - Update to 1.60.00wen2010-02-033-324/+346
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* - Update to 1.1.1miwi2010-02-032-11/+4
| | | | | PR: 143442 Submitted by: Ports Fury
* - Update to 3.1.2wen2010-02-022-4/+4
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* - Add py-numpy into RUN_DEPENDSlwhsu2010-02-011-0/+2
| | | | | PR: ports/143419 Submitted by: TAOKA Fumiyoshi <fmysh AT iijmio-mail.jp> (maintainer)
* Update to 20090112 R3.maho2010-02-013-12/+12
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* - Update to 2.0.4.5dhn2010-01-312-5/+5
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* Chase the goffice version bump.marcus2010-01-311-2/+2
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* The KDE FreeBSD team is proud to announce the release of SIP-4.10 andfluffy2010-01-302-18/+34
| | | | | | | PyQt-4.7 for FreeBSD. The official update notes can be found at http://www.riverbankcomputing.com We'd like to say thanks to all helpers, testers and submitters.
* Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulationwen2010-01-257-0/+85
| | | | | | | | | | software package developed at MIT to model electromagnetic systems, along with our MPB eigenmode package. WWW: http://ab-initio.mit.edu/wiki/index.php/Meep PR: ports/142158 Submitted by: Stas Timokhin <devel@stasyan.com>
* - Bump PORTREVISION to chase the update of libctlwen2010-01-241-2/+2
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* - Update to 3.1wen2010-01-243-8/+9
| | | | | | | - Fix the build and unbreak on FreeBSD-6 PR: ports/142158 Submitted by: Stas Timokhin <devel@stasyan.com>
* - Track textproc/docbook-410 dependency after recent changesgabor2010-01-241-1/+1
| | | | Approved by: portmgr (pav, erwin)
* - Update to 3.3.0miwi2010-01-224-12/+14
| | | | | PR: 142950 Submitted by: Stephen Montgomery-Smith <stephen@missouri.edu> (maintainer)
* - Update to 3.0.7wen2010-01-212-4/+4
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* - remove broken/expired ports@ portspgollucci2010-01-188-146/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Approved by: portmgr (miwi) audio/ccaudio||2010-01-18|Has expired: has been broken for 4 months audio/py-libmpdclient||2010-01-18|Has expired: has been broken for 3 months chinese/gbk2uni||2010-01-18|Has expired: has been broken for 6 months chinese/iiimf-le-xcin||2010-01-18|Has expired: has been broken for 3 months devel/adabindx||2010-01-18|Has expired: has been broken for 3 months devel/agide||2010-01-18|Has expired: has been broken for 6 months devel/asis||2010-01-18|Has expired: has been broken for 3 months devel/callgrind||2010-01-18|Has expired: Included in devel/valgrind devel/florist||2010-01-18|Has expired: has been broken for 3 months editors/xml2rfc-xxe||2010-01-18|Has expired: has been broken for 4 months graphics/gephex||2010-01-18|Has expired: has been broken for 3 months graphics/irit||2010-01-18|Has expired: has been broken for 3 months graphics/pixieplus||2010-01-18|Has expired: has been broken for 6 months japanese/expect||2010-01-18|Has expired: has been broken for 3 months lang/pnetc||2010-01-18|Has expired: has been broken for 5 months mail/libnewmail||2010-01-18|Has expired: has been broken for 3 months net-mgmt/flowscan||2010-01-18|Has expired: has been broken for 5 months net/astmanproxy||2010-01-18|Has expired: has been broken for 3 months palm/prc-tools||2010-01-18|Has expired: has been broken for 4 months print/latex-msc||2010-01-18|Has expired: has been broken for 3 months science/xloops-ginac||2010-01-18|Has expired: has been broken for 3 months shells/bush||2010-01-18|Has expired: has been broken for 3 months textproc/iiimf-gnome-im-switcher||2010-01-18|Has expired: has been broken for 4 months textproc/iiimf-gtk||2010-01-18|Has expired: has been broken for 3 months x11-toolkits/gtkada-devel||2010-01-18|Has expired: has been broken for 3 months x11-toolkits/gtkada||2010-01-18|Has expired: has been broken for 3 months x11-wm/ion-2||2010-01-18|Has expired: has been broken for 4 months
* Geo::WebService::Elevation::USGS executes elevation queries against thewen2010-01-155-0/+47
| | | | | | | | | | | United States Geological Survey's web server. You provide the latitude and longitude in degrees, with south latitude and west longitude being negative. The return is typically a hash containing the data you want. Query errors are exceptions by default, though the object can be configured to signal an error by an undef response, with the error retrievable from the 'error' attribute. WWW: http://search.cpan.org/dist/Geo-WebService-Elevation-USGS/
* - Update to 3.0.5wen2010-01-154-327/+16
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* - Update to 2.0.4.4dhn2010-01-152-4/+4
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* qtResistors - calculate resistance of resistor by the colors on the resistoramdmi32010-01-144-0/+37
| | | | | | | WWW: http://qt-apps.org/content/show.php/qtResistors?content=118297 PR: 142554 Submitted by: zloidemon <g.veniamin@googlemail.com>
* - Update to 1.4nemoliu2010-01-122-6/+5
| | | | | PR: ports/142562 Submitter: Igor Serikov <iserikov@acm.org> (maintainer)
* py-DendroPy is a python library for phylogenetic scripting,wen2010-01-096-0/+360
| | | | | | simulation, data processing and manipulation. WWW: http://packages.python.org/DendroPy/
* Change maintainer address on request of maintainer via a private email chat.edwin2010-01-081-1/+1
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* This is a collection of Haskell data structures and algorithms useful forpgj2010-01-035-0/+158
| | | | | | | | | | | building bioinformatics-related tools and utilities. Current list of features includes: a Sequence data type supporting protein and nucleotide sequences and conversion between them. WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/ PR: ports/142187 Submitted by: Jacula Modyun <jacula(at)gmail.com>
* Harminv is a free program (and accompanying library) to solve the problemwen2010-01-026-0/+64
| | | | | | | | | | | | of harmonic inversion - given a discrete-time, finite-length signal that consists of a sum of finitely-many sinusoids (possibly exponentially decaying) in a given bandwidth, it determines the frequencies, decay constants, amplitudes, and phases of those sinusoids. WWW: http://ab-initio.mit.edu/wiki/index.php/Harminv PR: ports/142154 Submitted by: Stas Timokhin <devel@stasyan.com>
* Upgrade to 0.9rc3.thierry2009-12-294-121/+144
| | | | | PR: ports/141809 Submitted by: Sylwester Arabas <slayoo (at) igf.fuw.edu.pl>
* - Update to 3.1.3wen2009-12-284-391/+723
| | | | | | | - Add file pkg-message PR: ports/141767 Submitted by: Anders Troback <freebsd@troback.com> (maintainer)
* For ports maintained by ports@FreeBSD.org, remove names and/ordougb2009-12-212-6/+0
| | | | | | | | e-mail addresses from the pkg-descr file that could reasonably be mistaken for maintainer contact information in order to avoid confusion on the part of users looking for support. As a pleasant side effect this also avoids confusion and/or frustration for people who are no longer maintaining those ports.
* - Mark BROKEN on 6.xpav2009-12-201-1/+7
| | | | Reported by: pointyhat
* Chase the gchemutils update.marcus2009-12-181-2/+2
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* Reset maintainer at his request.linimon2009-12-161-1/+1
| | | | PR: ports/141647
* - Get rip python 2.3+miwi2009-12-141-1/+1
| | | | | | | | Note: Python 2.3 is't longer supported and have a lot of security issues. Convert 2.3+ to yes/or 2.4/5+ With hat: portmgr
* - Update to 4.0.7miwi2009-12-134-25/+4
| | | | | PR: 141284 Submitted by: Florian Smeets <flo@kasimir.com> (maintainer)
* - Add CONFLICTS with science/hdf5-18amdmi32009-12-111-0/+2
| | | | | | PR: 140729 Submitted by: Alexey Shuvaev <shuvaev@physik.uni-wuerzburg.de> Approved by: maintainer timeout
* - Update to 3.6.1pav2009-12-0817-451/+457
| | | | | PR: ports/141243 Submitted by: Stas Timokhin <devel@stasyan.com>
* This port has been broken for 3+ months, thuspav2009-12-081-0/+2
| | | | | | - Mark DEPRECATED and schedule for expiration in one month With hat: portmgr
* Fix build with new goffice.kwm2009-12-062-2/+13
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* Reinstate maintainer at his request.linimon2009-12-041-1/+1
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* Chase math/gsl update,makc2009-12-028-11/+15
| | | | bump PORTREVISION
* - Update to 2.1.0wen2009-12-013-5/+21
| | | | - Update my mail address to FreeBSD
* - Chase relocation of net/mpich2thierry2009-11-286-16/+18
| | | | | | - Bump PORTREVISION if needed - Fix some portlint errors.
* - Chase graphics/proj shlib bumpmiwi2009-11-281-2/+2
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* - Update my mail address to FreeBSDsylvio2009-11-287-7/+7
| | | | Approved by: miwi (mentor)
* - Remove obsolete gecko providersbeat2009-11-271-2/+1
| | | | | Approved by: portmgr (miwi) Exp-run by: miwi
* Chase the goffice update.marcus2009-11-271-1/+2
|
* Temporarily reassign ports maintained by chris@officialunix.com back tolinimon2009-11-262-2/+1
| | | | | | the pool for the duration of his upcoming move. Requested by: maintainer
* - Update to 1.21wen2009-11-222-4/+4
|
* - Update to 1.0.0miwi2009-11-203-66/+67
| | | | | PR: 140538 Submitted by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
* PyBrain is a modular Machine Learning Library for Python.wen2009-11-195-0/+1124
| | | | | | | | | | | | | It's goal is to offer flexible, easy-to-use yet still powerful algorithms for Machine Learning Tasks and a variety of predefined environments to test and compare your algorithms. PyBrain is short for Python-Based Reinforcement Learning, Artificial Intelligence and Neural Network Library. In fact, we came up with the name first and later reverse-engineerer this quite descriptive "Backronym". WWW: http://pybrain.org/
* - Mark MAKE_JOBS_UNSAFEpav2009-11-193-0/+4
| | | | Reported by: pointyhat
* - Update to 0.10.9pav2009-11-182-5/+4
|
* - Update to 1.1.0miwi2009-11-123-6/+13
| | | | | PR: 140486 Submitted by: Ports Fury
* Builds on ia64.marcel2009-11-121-4/+0
| | | | Approved by: makc
* - Update to 1.51.01wen2009-11-113-261/+405
| | | | - Update my mail address to FreeBSD
* - Update to 1.2wen2009-11-082-4/+4
|
* Fix plist when NOPORTDOCS / NOPORTEXAMPLES are defined.thierry2009-11-072-4/+6
| | | | Reported by: QAT
* Upgrade to 3.5.thierry2009-11-073-31/+30
| | | | Changelog at <http://inac.cea.fr/L_Sim/V_Sim/changelog.en.html>.
* remove unnecessary file.maho2009-11-061-21/+0
| | | | Spotted by: QAT
* - Update to 0.7.2amdmi32009-11-052-4/+4
| | | | | PR: 140281 Submitted by: Chris Petrik <chris@officialunix.com> (maintainer)
* Update to 2.99.2.maho2009-11-053-7/+11
| | | | Feature safe: yes
* Update to 2.99.1 and unbreak.maho2009-11-054-26/+48
| | | | Feature safe: yes
* - Update to 2.9rafan2009-11-032-4/+5
|
* - Update to 1.1wen2009-11-033-5/+6
| | | | | | - Update my mail address to FreeBSD Approved by: miwi,jadawin(mentors,implicit)
* - Fix MASTER_SITESmiwi2009-10-291-1/+1
|
* - Update to 1.0.3miwi2009-10-296-67/+23
| | | | | PR: 139772 Submitted by: Ports Fury
* - Update to 1.5rafan2009-10-293-7/+8
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* - Update to 2.1.9wen2009-10-287-99/+19
| | | | | | PR: ports/139875 Submitted by: Sylvio Cesar <scjamorim@bsd.com.br> Approved by: miwi,jadawin(mentors,implicit)
* - Fix plist after doxygen update.wxs2009-10-222-2/+322
| | | | | Noticed by: Pav (pointyhat run) Approved by: maho@ (maintainer)
* - Update to 1.1.3wen2009-10-143-19/+95
| | | | | | - Update my mail address to FreeBSD Approved by: jadawin(co-mentor)
* Build fix.maho2009-10-142-6/+2
| | | | | Spotted by: miwi and pav Feature safe: yes
* Chase the goffice update.marcus2009-10-121-2/+2
|
* - Update to 11.8.7wen2009-10-093-8/+36
| | | | | | - Update my mail address to FreeBSD Approved by: miwi(mentor)
* adding extra rpath when linking after gcc44 migration.maho2009-10-092-1/+21
| | | | Feature safe: yes.
* Respect LOCALBASE.makc2009-10-081-1/+1
| | | | Reported by: QATty
* libkml is a library for use with applications that want towen2009-10-075-0/+233
| | | | | | | | | parse, generate and operate on KML. It is an implementation of the OGC KML 2.2 standard. WWW: http://code.google.com/p/libkml/ Approved by: miwi(mentor)
* - Change sed delimiters away from ,pav2009-10-051-8/+8
| | | | Reported by: pointyhat
* - Update to 2.0.4.3dhn2009-10-012-5/+11
|
* - Move pkgconfig config to libdata, just like others dorafan2009-09-272-8/+8
| | | | | | | | - Remove a useless post-patch - Bump PORTREVISION Submitted by: maintainer via irc Feature safe: yes
* - Update science/netcdf4 to 4.0.1rafan2009-09-266-13/+20
| | | | | | | | - Bump PORTREVISION for dependent ports PR: ports/136377 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net> (maintainer) Feature safe: yes
* Chase the goffice update.marcus2009-09-251-1/+2
| | | | Feature safe: yes
* - Update to 1.2.1wen2009-09-243-4/+7
| | | | | | | PR: ports/138984 Submitted by: wenheping@gmail.com(myself) Approved by: maintainer, jadawin(co-mentor) Feature safe: yes
* - Mark BROKEN on 7.X and 8.Xpav2009-09-241-0/+4
| | | | | Reported by: pointyhat Feature safe: yes
* Mark as broken: fails to compile since default gcc updated to 4.4.linimon2009-09-201-0/+2
| | | | Feature safe: yes
* - Update to 0.7.1wen2009-09-192-9/+6
| | | | | | | | | | - Change the dependence to fftw3 from fftw2 - Remove the unnecessary dependence PR: ports/138630 Submitted by: Wen Heping<wenheping@gmail.com> Approved by: maintainer, miwi(mentor) Feature safe: yes
* mol2ps is a freely available command-line utility program which readsmiwi2009-09-196-0/+159
| | | | | | | | | | | | | molecular structure files in different formats and generates Postscript output for 2D display. The Postscript file can then be used e.g. for creating a bitmap file, using a Postscript interpreter like Ghostscript. WWW: http://merian.pch.univie.ac.at/~nhaider/cheminf/mol2ps.html PR: ports/138673 Feature safe: yes Submitted by: Fernan Aguero <fernan at iib.unsam.edu.ar>
* Checkmol is a command-line utility program which reads molecularmiwi2009-09-194-0/+62
| | | | | | | | | | | | | | | | | | | | | | | | structure files in different formats and analyzes the input molecule for the presence of various functional groups and structural elements. At present, approx. 200 different functional groups are recognized. This output can be easily placed into a database table, permitting the creation of chemical databases with a functional group search option. Checkmol also outputs a set of statistical values derived from a given molecule, which can also be used for quick retrieval from a database. These values include: the number of atoms, bonds, and rings, the number of differently hybridized carbon, oxgen, and nitrogen atoms, the number of C=O double bonds, the number of rings of different sizes, the number of rings containing nitrogen, oxygen, sulfur, the number of aromatic rings, the number of heterocyclic rings, etc. The combination of all of these values for a given molecule represents some kind of "fingerprint" which is useful for rapid pre-selection in a database structure/substructure search prior to a full atom-by-atom match. WWW: http://merian.pch.univie.ac.at/~nhaider/cheminf/cmmm.html PR: ports/138670 Feature safe:yes Submitted by: Fernan Aguero <fernan at iib.unsam.edu.ar>
* - Update to 0.10.8pav2009-09-182-4/+4
| | | | Feature safe: yes
* - Update WWWmiwi2009-09-161-1/+1
| | | | | | PR: 138869 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> Feature safe: yes
* Update to 0.9.8makc2009-09-153-7/+11
| | | | | PR: ports/138761 Submitted by: Troels Kofoed Jacobsen (maintainer)
* - Update to 0.7.1miwi2009-09-132-4/+4
| | | | | PR: 138714 Submitted by: Chris Petrik <chris@officialunix.com> (maintainer)
* Bump PORTREVISION for everything that sets USE_FORTRAN=yes which nowgerald2009-09-1329-24/+29
| | | | | | implies lang/gcc44 up from lang/gcc43. Approved by: portmgr
* Update to 0.10.7.kwm2009-09-063-5/+27
|
* - Update to 1.8.3.araujo2009-09-043-8/+7
| | | | | | PR: ports/138052 Submitted by: Sylvio Cesar <scjamorim@bsd.com.br> Approved by: Quincey Koziol <koziol@hdfgroup.org> (maintainer)
* - Update to 1.6.9.araujo2009-09-043-5/+5
| | | | | | PR: ports/138051 Submitted by: Sylvio Cesar <scjamorim@bsd.com.br> Approved by: Quincey Koziol <koziol@hdfgroup.org> (maintainer)
* Update to 0.10.6.kwm2009-09-043-13/+9
|
* - Retire MASTER_SITE_SOURCEFORGE_EXTENDED, it's no longer needed - all ↵amdmi32009-09-021-2/+1
| | | | | | | | | mirrors actually have all distfiles - Merge all SF mirrors to MASTER_SITE_SOURCEFORGE, resort according to quick download speed survey - Fix MASTER_SITES for all port that have used SOURCEFORGE_EXTENTED Approved by: portmgr (pav)
* Update peekabot to 0.7.0makc2009-08-233-10/+9
| | | | | PR: ports/138091 Submitted by: Chris Petrik (maintainer)
* - Fix fetch by using garr SF mirror which still has the distfilesamdmi32009-08-227-7/+7
|
* - Switch SourceForge ports to the new File Release System: categories ↵amdmi32009-08-2235-55/+38
| | | | starting with P,R,S
* - Update to 0.52clsung2009-08-213-4/+6
|
* - Mark as broken, doesn't build with latest math/GiNaC version.araujo2009-08-211-1/+3
|
* - Fix fetchmiwi2009-08-191-1/+2
|
* - Update of dependency to new math/GiNaC version.araujo2009-08-191-2/+2
| | | | | | | - Bump PORTREVISION. Reported by: erwin (pointyhat) Submitted by: Sylvio Cesar <scjamorim@bsd.com.br>
* With the change in dependencies of goffice, add an explicit dependencymarcus2009-08-171-2/+2
| | | | | | on libgnomecanvas. Reported by: QAT
* Chase goffice update.marcus2009-08-172-4/+5
|
* Mark as broken from sparc64.linimon2009-08-161-1/+7
| | | | Hat: portmgr
* - Update to latest 1.1 versiondb2009-08-164-23/+21
| | | | Notified by: miwi (portscout)
* libquantum is a C library for the simulation of quantummiwi2009-08-155-0/+37
| | | | | | | | | | | | mechanics, with a special focus laid to quantum computing. It started as a pure quantum computer simulator, but support for general quantum simulation has been recently added. WWW: http://www.libquantum.de/ PR: ports/137468 Submitted by: Wen Heping <wenheping at gmail.com>
* make fetchable.maho2009-08-141-1/+2
|
* Update to 1.8.0makc2009-08-126-152/+66
| | | | Mark MAKE_JOBS_SAFE
* Remove science/dft++. Not actively maintained the original site. Oldmaho2009-08-119-384/+0
| | | | | | style coding with lots of warnings, and build error with gcc44. Also suggested by: gerald@
* Update to 0.9.7 and unbreak.makc2009-08-113-64/+57
| | | | Approved by: maintainer
* Update to 2.2.2makc2009-08-112-5/+9
| | | | Respect LOCALBASE (reported by QATty)
* Update to 2.2.2makc2009-08-113-10/+16
| | | | Mark MAKE_JOBS_SAFE
* Silent update of distfiles, update is only for pdf documents.maho2009-08-101-6/+6
| | | | pdf files are also updated to 3.4.0.
* Mark broken after recent PyQt updatemakc2009-08-101-0/+2
|
* - Mark MAKE_JOBS_UNSAFEamdmi32009-08-061-0/+1
| | | | | | PR: 137462 Submitted by: myself Approved by: Quincey Koziol <koziol@hdfgroup.org> (maintainer)
* - Mark MAKE_JOBS_UNSAFE, fails with force make jobsamdmi32009-08-061-0/+1
|
* Update to 1.3.9 and unbreak.maho2009-08-058-294/+80
| | | | Hoping sparc version is also builds as well.
* - Update to 1.34rafan2009-08-042-4/+4
|
* Build fix with gcc44 (upcoming)maho2009-08-031-0/+72
| | | | Spotted by: gerald
* -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.mezz2009-08-0315-15/+15
| | | | | | | | | | | | | | | | | | -Update libtool and libltdl to 2.2.6a. -Remove devel/libtool15 and devel/libltdl15. -Fix ports build with libtool22/libltdl22. -Bump ports that depend on libltdl22 due to shared library version change. -Explain what to do update in the UPDATING. It has been tested with GNOME2, XFCE4, KDE3, KDE4 and other many wm/desktop and applications in the runtime. With help: marcus and kwm Pointyhat-exp: a few times by pav Tested by: pgollucci, "Romain Tartière" <romain@blogreen.org>, and a few MarcusCom CVS users. Also, I might have missed a few. Repocopy by: marcus Approved by: portmgr
* - bump all port that indirectly depends on libjpeg and have not yet been ↵dinoex2009-07-3134-21/+34
| | | | | | bumped or updated Requested by: edwin
* - Update boost to 1.39pav2009-07-283-3/+3
| | | | | | | - Split boost port to separate components, with boost-all metaport PR: ports/137054 Submitted by: Alexander Churanov <churanov.port.maintainer@gmail.com> (maintainer)
* - Update to 2.16miwi2009-07-284-268/+324
| | | | | PR: 136995 Submitted by: David Necas <yeti@gwyddion.net> (maintainer)
* - lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checkspgollucci2009-07-231-7/+1
| | | | | | PR: ports/135398 Tested by: 2 -exp runs by pav Approved by: portmgr (pav)
* - update to jpeg7dinoex2009-07-182-4/+4
| | | | Tested by: pav on pointyhat
* Add py-h5py 1.2.0, a general-purpose Python interface to the HDF5lwhsu2009-07-135-0/+222
| | | | | | | library. PR: ports/136096 Submitted by: TAOKA Fumiyoshi
* * Fix build of science/py-scipy when math/suitesparse is installed, bylwhsu2009-07-131-2/+11
| | | | | | | | | | | | correctly detect and depend on it in math/py-numpy * Replace the old numpy documentation with the new numpy book * Explicitly tell the distutil to use gnu95 fortran compiler * Use ${PYTHONPREFIX_SITELIBDIR} rather than ${PYTHON_SITELIBDIR} when generating the packing list for science/py-scipy * Bump PORTREVISIONs, for packing lists are changed PR: ports/136058 Submitted by: Li-Lun Wang (Leland Wang) <llwang AT infor.org> (maintainer)
* - Pass maintainer to Sylvio Cesar <scjamorim at bsd.com.br>.araujo2009-07-104-4/+4
|
* - Mark as unbroken.araujo2009-07-104-165/+179
| | | | | | | | - Bump PORTREVISION. - Pass maintainer to submitter. PR: ports/135868 Submitted by: Sylvio Cesar <scjamorim@bsd.com.br>
* - Bump PORTREVISION in favor of elmer-matc.araujo2009-07-101-2/+2
| | | | - Pass maintainer to Sylvio Cesar <scjamorim at bsd.com.br>
* - Fix build.araujo2009-07-102-6/+6
| | | | | | | | - Sorted plist file. - Pass maintainer to submitter. PR: ports/136396 Submitted by: Sylvio Cesar <scjamorim@bsd.com.br>
* - Update to 0.10.5pav2009-07-0717-966/+6
|
* - update to 3.0.20081216 from 3.0.20071212itetcu2009-07-063-8/+10
| | | | | | | - fix the build error with custom LOCALBASE [1] Submitted by: maintainer Reported by: QATty [1]
* Chase the goffice update.marcus2009-07-052-4/+4
|
* Fix with custom LOCALBASE/PREFIXitetcu2009-07-041-0/+4
| | | | | Submitted by: maintainer Reported by: QATty
* - Update to 0.8.1miwi2009-06-253-5/+7
| | | | | PR: 135907 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
* peekabot is a distributed real-time 3D visualization tool for roboticsamdmi32009-06-226-0/+166
| | | | | | | | | | | | | | researchers and developers, written in C++. Its purpose is to simplify the visualization needs faced by a roboticist daily - using visualization as a debugging aid or making fancy slides for a presentation, for example. Chris Petrik (chris@officialunix.com) WWW: http://www.peekabot.org PR: 135892 Submitted by: Chris Petrik <c.petrik.sosa@gmail.com>
* Update maintainer's email address. Had already been done for hislinimon2009-06-2012-12/+12
| | | | other ports.
* - Assign all unmaintained ruby ports to ruby@,stas2009-06-161-1/+1
| | | | so people will know where to send questions to.
* Remove science/openfoam as it has been marked BROKEN for over 5 months.erwin2009-06-1449-11052/+0
|
* Remove science/elmerfront as it has been marked BROKEN over 3 months ago.erwin2009-06-146-152/+0
|
* Convert most of remaining ports that depend on xorg-libraries toamdmi32009-06-093-6/+6
| | | | | | | | | | | | | modular xorg. - supply corresponding USE_XORG for all imake-using ports that need it - USE_IMAKE no longer implies USE_XLIB in absence of USE_XORG - retire USE_X_PREFIX which is not really used anywhere after the above change - a few minor nits like whitespace and SF macro Tested by: 2 tinderbox runs by pav Approved by: portmgr (pav)
* - Mark MAKE_JOBS_UNSAFE, fails with forced jobs on my tinderboxamdmi32009-06-091-0/+1
|
* Fix build on amd64 and now it's usable.maho2009-06-083-3/+13
|
* - Update to 0.9.6dhn2009-06-083-55/+102
| | | | | PR: ports/135312 Submitted by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
* - Update to 4.0.5miwi2009-06-073-5/+13
| | | | | PR: 135246 Submitted by: Florian Smeets <flo@kasimir.com> (maintainer)
* - Update to 0.9.5amdmi32009-06-063-12/+89
| | | | | PR: 135263 Submitted by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
* - Update to 0.09pgollucci2009-06-062-4/+4
| | | | | | PR: ports/134837 Approved by: maintainer timeout (clsung; 15 days) Submitted by: me
* - Update to 2.0.3miwi2009-06-063-7/+7
| | | | | PR: 135210 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
* Upgrade to 3.4.4.thierry2009-06-062-4/+4
| | | | Changelog at <http://inac.cea.fr/L_Sim/V_Sim/changelog.en.html#3.4>.
* - Update to 1.3.1lwhsu2009-06-062-5/+4
| | | | | PR: ports/134179 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
* - Resolve LATEST_LINK conflictpav2009-06-012-0/+2
|
* - Fix build on sparc64 by files/patch-include__gmx_cyclecounter.hrafan2009-05-312-16/+23
| | | | | | | | | | | - Fix WITH_MPICH - Use LOCALBASE for reference to bits installed by others - Pass maintainership to the submitter - Pet portlint(1): IGNORE PR: ports/133242 Submitted by: Florian Smeets <flo at kasimir.com> Approved by: Stephen Montgomery-Smith <stephen at math.missouri.edu> (maintainer)
* Take over.maho2009-05-291-1/+1
|
* Chase the goffice update.marcus2009-05-252-3/+4
|
* Avogadro is an advanced molecular editor designed for cross-platform use inamdmi32009-05-235-0/+391
| | | | | | | | | | | computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible rendering and a powerful plugin architecture. WWW: http://avogadro.openmolecules.net/ PR: 134710 Submitted by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com>
* - Chase fftw3 updatepav2009-05-183-6/+7
|
* Chemistry-MacroMol is a toolkit includes basic objects and methods tomiwi2009-05-175-0/+42
| | | | | | | | | | | | | describe macromolecules, a macromolecule is just a molecule that consists of several "domains". For example, a protein consists of aminoacid residues, or a nucleic acid consists of bases. Therefore Chemistry::MacroMol is derived from Chemistry::Mol, with additional methods to handle the domains. WWW: http://search.cpan.org/dist/Chemistry-MacroMol/ PR: ports/134609 Submitted by: Wen Heping <wenheping at gmail.com>
* p5-Chemistry-File-PDB reads and writes PDB files. The PDB file formatmiwi2009-05-175-0/+41
| | | | | | | | | | is commonly used to describe proteins, particularly those stored in the Protein Data Bank. WWW: http://search.cpan.org/dist/Chemistry-File-PDB/ PR: ports/134612 Submitted by: Wen Heping <wenheping at gmail.com>
* Chemistr-Mol is a toolkit includes basic objects and methods tomiwi2009-05-175-0/+52
| | | | | | | | | | describe molecules. It consists of several modules: Chemistry::Mol, Chemistry::Atom, Chemistry::Bond, and Chemistry::File. WWW: http://search.cpan.org/dist/Chemistry-Mol/ PR: ports/134462 Submitted by: Wen Heping <wenheping at gmail.com>
* - Chase readline updatepav2009-05-142-4/+4
| | | | Reported by: pointyhat
* - Update to 0.99.12beat2009-05-143-5/+4
| | | | Approved by: miwi (mentor)
* Release these ports into the wild due to maintainer-timeouts and nolinimon2009-05-132-4/+1
| | | | response to email. We hope to see him back again sometime.
* - Update naively to 0.10.4 and mark BROKEN: does not compile with goffice-0.7.6pav2009-05-122-5/+6
|
* Chase the API changes in goffice-0.7.6.marcus2009-05-113-4/+33
|
* - Update to 1.00.00miwi2009-05-113-5/+8
| | | | | PR: 134217 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
generated by cgit (git 2.34.1) at 2024-11-24 22:25:20 +0800