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* - Update to 1.1.3wen2009-10-143-19/+95
| | | | | | - Update my mail address to FreeBSD Approved by: jadawin(co-mentor)
* Build fix.maho2009-10-142-6/+2
| | | | | Spotted by: miwi and pav Feature safe: yes
* Chase the goffice update.marcus2009-10-121-2/+2
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* - Update to 11.8.7wen2009-10-093-8/+36
| | | | | | - Update my mail address to FreeBSD Approved by: miwi(mentor)
* adding extra rpath when linking after gcc44 migration.maho2009-10-092-1/+21
| | | | Feature safe: yes.
* Respect LOCALBASE.makc2009-10-081-1/+1
| | | | Reported by: QATty
* libkml is a library for use with applications that want towen2009-10-075-0/+233
| | | | | | | | | parse, generate and operate on KML. It is an implementation of the OGC KML 2.2 standard. WWW: http://code.google.com/p/libkml/ Approved by: miwi(mentor)
* - Change sed delimiters away from ,pav2009-10-051-8/+8
| | | | Reported by: pointyhat
* - Update to 2.0.4.3dhn2009-10-012-5/+11
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* - Move pkgconfig config to libdata, just like others dorafan2009-09-272-8/+8
| | | | | | | | - Remove a useless post-patch - Bump PORTREVISION Submitted by: maintainer via irc Feature safe: yes
* - Update science/netcdf4 to 4.0.1rafan2009-09-266-13/+20
| | | | | | | | - Bump PORTREVISION for dependent ports PR: ports/136377 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net> (maintainer) Feature safe: yes
* Chase the goffice update.marcus2009-09-251-1/+2
| | | | Feature safe: yes
* - Update to 1.2.1wen2009-09-243-4/+7
| | | | | | | PR: ports/138984 Submitted by: wenheping@gmail.com(myself) Approved by: maintainer, jadawin(co-mentor) Feature safe: yes
* - Mark BROKEN on 7.X and 8.Xpav2009-09-241-0/+4
| | | | | Reported by: pointyhat Feature safe: yes
* Mark as broken: fails to compile since default gcc updated to 4.4.linimon2009-09-201-0/+2
| | | | Feature safe: yes
* - Update to 0.7.1wen2009-09-192-9/+6
| | | | | | | | | | - Change the dependence to fftw3 from fftw2 - Remove the unnecessary dependence PR: ports/138630 Submitted by: Wen Heping<wenheping@gmail.com> Approved by: maintainer, miwi(mentor) Feature safe: yes
* mol2ps is a freely available command-line utility program which readsmiwi2009-09-196-0/+159
| | | | | | | | | | | | | molecular structure files in different formats and generates Postscript output for 2D display. The Postscript file can then be used e.g. for creating a bitmap file, using a Postscript interpreter like Ghostscript. WWW: http://merian.pch.univie.ac.at/~nhaider/cheminf/mol2ps.html PR: ports/138673 Feature safe: yes Submitted by: Fernan Aguero <fernan at iib.unsam.edu.ar>
* Checkmol is a command-line utility program which reads molecularmiwi2009-09-194-0/+62
| | | | | | | | | | | | | | | | | | | | | | | | structure files in different formats and analyzes the input molecule for the presence of various functional groups and structural elements. At present, approx. 200 different functional groups are recognized. This output can be easily placed into a database table, permitting the creation of chemical databases with a functional group search option. Checkmol also outputs a set of statistical values derived from a given molecule, which can also be used for quick retrieval from a database. These values include: the number of atoms, bonds, and rings, the number of differently hybridized carbon, oxgen, and nitrogen atoms, the number of C=O double bonds, the number of rings of different sizes, the number of rings containing nitrogen, oxygen, sulfur, the number of aromatic rings, the number of heterocyclic rings, etc. The combination of all of these values for a given molecule represents some kind of "fingerprint" which is useful for rapid pre-selection in a database structure/substructure search prior to a full atom-by-atom match. WWW: http://merian.pch.univie.ac.at/~nhaider/cheminf/cmmm.html PR: ports/138670 Feature safe:yes Submitted by: Fernan Aguero <fernan at iib.unsam.edu.ar>
* - Update to 0.10.8pav2009-09-182-4/+4
| | | | Feature safe: yes
* - Update WWWmiwi2009-09-161-1/+1
| | | | | | PR: 138869 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> Feature safe: yes
* Update to 0.9.8makc2009-09-153-7/+11
| | | | | PR: ports/138761 Submitted by: Troels Kofoed Jacobsen (maintainer)
* - Update to 0.7.1miwi2009-09-132-4/+4
| | | | | PR: 138714 Submitted by: Chris Petrik <chris@officialunix.com> (maintainer)
* Bump PORTREVISION for everything that sets USE_FORTRAN=yes which nowgerald2009-09-1329-24/+29
| | | | | | implies lang/gcc44 up from lang/gcc43. Approved by: portmgr
* Update to 0.10.7.kwm2009-09-063-5/+27
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* - Update to 1.8.3.araujo2009-09-043-8/+7
| | | | | | PR: ports/138052 Submitted by: Sylvio Cesar <scjamorim@bsd.com.br> Approved by: Quincey Koziol <koziol@hdfgroup.org> (maintainer)
* - Update to 1.6.9.araujo2009-09-043-5/+5
| | | | | | PR: ports/138051 Submitted by: Sylvio Cesar <scjamorim@bsd.com.br> Approved by: Quincey Koziol <koziol@hdfgroup.org> (maintainer)
* Update to 0.10.6.kwm2009-09-043-13/+9
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* - Retire MASTER_SITE_SOURCEFORGE_EXTENDED, it's no longer needed - all ↵amdmi32009-09-021-2/+1
| | | | | | | | | mirrors actually have all distfiles - Merge all SF mirrors to MASTER_SITE_SOURCEFORGE, resort according to quick download speed survey - Fix MASTER_SITES for all port that have used SOURCEFORGE_EXTENTED Approved by: portmgr (pav)
* Update peekabot to 0.7.0makc2009-08-233-10/+9
| | | | | PR: ports/138091 Submitted by: Chris Petrik (maintainer)
* - Fix fetch by using garr SF mirror which still has the distfilesamdmi32009-08-227-7/+7
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* - Switch SourceForge ports to the new File Release System: categories ↵amdmi32009-08-2235-55/+38
| | | | starting with P,R,S
* - Update to 0.52clsung2009-08-213-4/+6
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* - Mark as broken, doesn't build with latest math/GiNaC version.araujo2009-08-211-1/+3
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* - Fix fetchmiwi2009-08-191-1/+2
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* - Update of dependency to new math/GiNaC version.araujo2009-08-191-2/+2
| | | | | | | - Bump PORTREVISION. Reported by: erwin (pointyhat) Submitted by: Sylvio Cesar <scjamorim@bsd.com.br>
* With the change in dependencies of goffice, add an explicit dependencymarcus2009-08-171-2/+2
| | | | | | on libgnomecanvas. Reported by: QAT
* Chase goffice update.marcus2009-08-172-4/+5
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* Mark as broken from sparc64.linimon2009-08-161-1/+7
| | | | Hat: portmgr
* - Update to latest 1.1 versiondb2009-08-164-23/+21
| | | | Notified by: miwi (portscout)
* libquantum is a C library for the simulation of quantummiwi2009-08-155-0/+37
| | | | | | | | | | | | mechanics, with a special focus laid to quantum computing. It started as a pure quantum computer simulator, but support for general quantum simulation has been recently added. WWW: http://www.libquantum.de/ PR: ports/137468 Submitted by: Wen Heping <wenheping at gmail.com>
* make fetchable.maho2009-08-141-1/+2
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* Update to 1.8.0makc2009-08-126-152/+66
| | | | Mark MAKE_JOBS_SAFE
* Remove science/dft++. Not actively maintained the original site. Oldmaho2009-08-119-384/+0
| | | | | | style coding with lots of warnings, and build error with gcc44. Also suggested by: gerald@
* Update to 0.9.7 and unbreak.makc2009-08-113-64/+57
| | | | Approved by: maintainer
* Update to 2.2.2makc2009-08-112-5/+9
| | | | Respect LOCALBASE (reported by QATty)
* Update to 2.2.2makc2009-08-113-10/+16
| | | | Mark MAKE_JOBS_SAFE
* Silent update of distfiles, update is only for pdf documents.maho2009-08-101-6/+6
| | | | pdf files are also updated to 3.4.0.
* Mark broken after recent PyQt updatemakc2009-08-101-0/+2
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* - Mark MAKE_JOBS_UNSAFEamdmi32009-08-061-0/+1
| | | | | | PR: 137462 Submitted by: myself Approved by: Quincey Koziol <koziol@hdfgroup.org> (maintainer)
* - Mark MAKE_JOBS_UNSAFE, fails with force make jobsamdmi32009-08-061-0/+1
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* Update to 1.3.9 and unbreak.maho2009-08-058-294/+80
| | | | Hoping sparc version is also builds as well.
* - Update to 1.34rafan2009-08-042-4/+4
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* Build fix with gcc44 (upcoming)maho2009-08-031-0/+72
| | | | Spotted by: gerald
* -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.mezz2009-08-0315-15/+15
| | | | | | | | | | | | | | | | | | -Update libtool and libltdl to 2.2.6a. -Remove devel/libtool15 and devel/libltdl15. -Fix ports build with libtool22/libltdl22. -Bump ports that depend on libltdl22 due to shared library version change. -Explain what to do update in the UPDATING. It has been tested with GNOME2, XFCE4, KDE3, KDE4 and other many wm/desktop and applications in the runtime. With help: marcus and kwm Pointyhat-exp: a few times by pav Tested by: pgollucci, "Romain Tartière" <romain@blogreen.org>, and a few MarcusCom CVS users. Also, I might have missed a few. Repocopy by: marcus Approved by: portmgr
* - bump all port that indirectly depends on libjpeg and have not yet been ↵dinoex2009-07-3134-21/+34
| | | | | | bumped or updated Requested by: edwin
* - Update boost to 1.39pav2009-07-283-3/+3
| | | | | | | - Split boost port to separate components, with boost-all metaport PR: ports/137054 Submitted by: Alexander Churanov <churanov.port.maintainer@gmail.com> (maintainer)
* - Update to 2.16miwi2009-07-284-268/+324
| | | | | PR: 136995 Submitted by: David Necas <yeti@gwyddion.net> (maintainer)
* - lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checkspgollucci2009-07-231-7/+1
| | | | | | PR: ports/135398 Tested by: 2 -exp runs by pav Approved by: portmgr (pav)
* - update to jpeg7dinoex2009-07-182-4/+4
| | | | Tested by: pav on pointyhat
* Add py-h5py 1.2.0, a general-purpose Python interface to the HDF5lwhsu2009-07-135-0/+222
| | | | | | | library. PR: ports/136096 Submitted by: TAOKA Fumiyoshi
* * Fix build of science/py-scipy when math/suitesparse is installed, bylwhsu2009-07-131-2/+11
| | | | | | | | | | | | correctly detect and depend on it in math/py-numpy * Replace the old numpy documentation with the new numpy book * Explicitly tell the distutil to use gnu95 fortran compiler * Use ${PYTHONPREFIX_SITELIBDIR} rather than ${PYTHON_SITELIBDIR} when generating the packing list for science/py-scipy * Bump PORTREVISIONs, for packing lists are changed PR: ports/136058 Submitted by: Li-Lun Wang (Leland Wang) <llwang AT infor.org> (maintainer)
* - Pass maintainer to Sylvio Cesar <scjamorim at bsd.com.br>.araujo2009-07-104-4/+4
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* - Mark as unbroken.araujo2009-07-104-165/+179
| | | | | | | | - Bump PORTREVISION. - Pass maintainer to submitter. PR: ports/135868 Submitted by: Sylvio Cesar <scjamorim@bsd.com.br>
* - Bump PORTREVISION in favor of elmer-matc.araujo2009-07-101-2/+2
| | | | - Pass maintainer to Sylvio Cesar <scjamorim at bsd.com.br>
* - Fix build.araujo2009-07-102-6/+6
| | | | | | | | - Sorted plist file. - Pass maintainer to submitter. PR: ports/136396 Submitted by: Sylvio Cesar <scjamorim@bsd.com.br>
* - Update to 0.10.5pav2009-07-0717-966/+6
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* - update to 3.0.20081216 from 3.0.20071212itetcu2009-07-063-8/+10
| | | | | | | - fix the build error with custom LOCALBASE [1] Submitted by: maintainer Reported by: QATty [1]
* Chase the goffice update.marcus2009-07-052-4/+4
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* Fix with custom LOCALBASE/PREFIXitetcu2009-07-041-0/+4
| | | | | Submitted by: maintainer Reported by: QATty
* - Update to 0.8.1miwi2009-06-253-5/+7
| | | | | PR: 135907 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
* peekabot is a distributed real-time 3D visualization tool for roboticsamdmi32009-06-226-0/+166
| | | | | | | | | | | | | | researchers and developers, written in C++. Its purpose is to simplify the visualization needs faced by a roboticist daily - using visualization as a debugging aid or making fancy slides for a presentation, for example. Chris Petrik (chris@officialunix.com) WWW: http://www.peekabot.org PR: 135892 Submitted by: Chris Petrik <c.petrik.sosa@gmail.com>
* Update maintainer's email address. Had already been done for hislinimon2009-06-2012-12/+12
| | | | other ports.
* - Assign all unmaintained ruby ports to ruby@,stas2009-06-161-1/+1
| | | | so people will know where to send questions to.
* Remove science/openfoam as it has been marked BROKEN for over 5 months.erwin2009-06-1449-11052/+0
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* Remove science/elmerfront as it has been marked BROKEN over 3 months ago.erwin2009-06-146-152/+0
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* Convert most of remaining ports that depend on xorg-libraries toamdmi32009-06-093-6/+6
| | | | | | | | | | | | | modular xorg. - supply corresponding USE_XORG for all imake-using ports that need it - USE_IMAKE no longer implies USE_XLIB in absence of USE_XORG - retire USE_X_PREFIX which is not really used anywhere after the above change - a few minor nits like whitespace and SF macro Tested by: 2 tinderbox runs by pav Approved by: portmgr (pav)
* - Mark MAKE_JOBS_UNSAFE, fails with forced jobs on my tinderboxamdmi32009-06-091-0/+1
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* Fix build on amd64 and now it's usable.maho2009-06-083-3/+13
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* - Update to 0.9.6dhn2009-06-083-55/+102
| | | | | PR: ports/135312 Submitted by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
* - Update to 4.0.5miwi2009-06-073-5/+13
| | | | | PR: 135246 Submitted by: Florian Smeets <flo@kasimir.com> (maintainer)
* - Update to 0.9.5amdmi32009-06-063-12/+89
| | | | | PR: 135263 Submitted by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
* - Update to 0.09pgollucci2009-06-062-4/+4
| | | | | | PR: ports/134837 Approved by: maintainer timeout (clsung; 15 days) Submitted by: me
* - Update to 2.0.3miwi2009-06-063-7/+7
| | | | | PR: 135210 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
* Upgrade to 3.4.4.thierry2009-06-062-4/+4
| | | | Changelog at <http://inac.cea.fr/L_Sim/V_Sim/changelog.en.html#3.4>.
* - Update to 1.3.1lwhsu2009-06-062-5/+4
| | | | | PR: ports/134179 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
* - Resolve LATEST_LINK conflictpav2009-06-012-0/+2
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* - Fix build on sparc64 by files/patch-include__gmx_cyclecounter.hrafan2009-05-312-16/+23
| | | | | | | | | | | - Fix WITH_MPICH - Use LOCALBASE for reference to bits installed by others - Pass maintainership to the submitter - Pet portlint(1): IGNORE PR: ports/133242 Submitted by: Florian Smeets <flo at kasimir.com> Approved by: Stephen Montgomery-Smith <stephen at math.missouri.edu> (maintainer)
* Take over.maho2009-05-291-1/+1
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* Chase the goffice update.marcus2009-05-252-3/+4
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* Avogadro is an advanced molecular editor designed for cross-platform use inamdmi32009-05-235-0/+391
| | | | | | | | | | | computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible rendering and a powerful plugin architecture. WWW: http://avogadro.openmolecules.net/ PR: 134710 Submitted by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com>
* - Chase fftw3 updatepav2009-05-183-6/+7
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* Chemistry-MacroMol is a toolkit includes basic objects and methods tomiwi2009-05-175-0/+42
| | | | | | | | | | | | | describe macromolecules, a macromolecule is just a molecule that consists of several "domains". For example, a protein consists of aminoacid residues, or a nucleic acid consists of bases. Therefore Chemistry::MacroMol is derived from Chemistry::Mol, with additional methods to handle the domains. WWW: http://search.cpan.org/dist/Chemistry-MacroMol/ PR: ports/134609 Submitted by: Wen Heping <wenheping at gmail.com>
* p5-Chemistry-File-PDB reads and writes PDB files. The PDB file formatmiwi2009-05-175-0/+41
| | | | | | | | | | is commonly used to describe proteins, particularly those stored in the Protein Data Bank. WWW: http://search.cpan.org/dist/Chemistry-File-PDB/ PR: ports/134612 Submitted by: Wen Heping <wenheping at gmail.com>
* Chemistr-Mol is a toolkit includes basic objects and methods tomiwi2009-05-175-0/+52
| | | | | | | | | | describe molecules. It consists of several modules: Chemistry::Mol, Chemistry::Atom, Chemistry::Bond, and Chemistry::File. WWW: http://search.cpan.org/dist/Chemistry-Mol/ PR: ports/134462 Submitted by: Wen Heping <wenheping at gmail.com>
* - Chase readline updatepav2009-05-142-4/+4
| | | | Reported by: pointyhat
* - Update to 0.99.12beat2009-05-143-5/+4
| | | | Approved by: miwi (mentor)
* Release these ports into the wild due to maintainer-timeouts and nolinimon2009-05-132-4/+1
| | | | response to email. We hope to see him back again sometime.
* - Update naively to 0.10.4 and mark BROKEN: does not compile with goffice-0.7.6pav2009-05-122-5/+6
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* Chase the API changes in goffice-0.7.6.marcus2009-05-113-4/+33
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* - Update to 1.00.00miwi2009-05-113-5/+8
| | | | | PR: 134217 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
* Fix patching by merging two patches for the same file.marcus2009-05-102-84/+73
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* Chase the goffice update.marcus2009-05-092-4/+4
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* Update to 20090112 R1 version.maho2009-05-088-79/+85
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* - reset MAINTAINER per requestleeym2009-05-061-1/+1
| | | | | PR: 134253 Submitted by: giffunip@tutopia.com
* Merge some patches from gchemutils SVN to fix the build with goffice 0.7.5.marcus2009-05-055-3/+274
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* Add some more goffice TYPE name conversions.marcus2009-05-046-0/+89
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* Fix another TYPE name change with goffice 0.7.5.marcus2009-05-041-0/+20
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* Add another goffice-0.7.5 build fix.marcus2009-05-031-0/+11
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* Fix the build with goffice 0.7.5.marcus2009-05-031-0/+11
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* Chase the goffice update.marcus2009-05-032-4/+4
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* - Update to 1.1.0miwi2009-05-014-42/+7
| | | | | PR: 133337 Submitted by: Wen Heping <wenheping@gmail.com>
* Update to 2.2.1makc2009-04-266-20/+23
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* Fix build with NOPORTDOCS, NOPORTEXAMPLES.maho2009-04-241-2/+2
| | | | Submitted by: QAT
* Machine Learning PY (mlpy) is a high-performance Python package formiwi2009-04-245-0/+125
| | | | | | | | | | | | | | | | predictive modeling. It makes extensive use of numpy (http://scipy.org) to provide fast N-dimensional array manipulation and easy integration of C code. mlpy provides high level procedures that support, with few lines of code, the design of rich Data Analysis Protocols (DAPs) for preprocessing, clustering, predictive classification and feature selection. Methods are available for feature weighting and ranking, data resampling, error evaluation and experiment landscaping.The package includes tools to measure stability in sets of ranked feature lists. WWW: http://mlpy.fbk.eu/ PR: ports/133932 Submitted by: Wen Heping <wenheping at gmail.com>
* Update to 3.4.0.maho2009-04-217-720/+862
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* Fix build on amd64.maho2009-04-132-0/+22
| | | | Spotted by: QAT and pav.
* - Update to 6.02leeym2009-04-122-22/+11
| | | | | | PR: 133601 Submitted by: leeym Approved by: maintainer
* 2009-03-22 science/oof: Broken with GCC 4.2 and beyondmiwi2009-04-114-90/+0
| | | | 2009-04-06 www/raqdevil: Master site gone, distfiles not fetchable
* - Fix DEPRECATED outputmiwi2009-04-111-0/+1
| | | | Reported by: rmport
* - Upgrade to 5.7.3thierry2009-04-106-26/+208
| | | | | | | | | | Release notes at <http://www.abinit.org/Infos_v5.7/release_notes/release_notes.html> - enable bindings to get the headers This requires makemake and GSL. Approved by: Maho (maintainer)
* - Update maintainer mail addressdhn2009-04-064-4/+4
| | | | | | PR: ports/133397 Submitted by: Stephen Montgomery-Smith <stephen@missouri.edu> (maintainer) Approved by: tabthorpe (co-mentor)
* Use NOPORTEXAMPLES and %%PORTEXAMPLES%% where appropiate to fix packaging withitetcu2009-04-052-39/+39
| | | | | | | -DNOPORT* defined. Prompted by: QAT QA run Approved by: maintainer timeout on QATMail
* - Update to 2.89rafan2009-04-012-4/+4
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* - Allow to build with MAKE_JOBS_SAFEmiwi2009-03-312-1/+2
| | | | | PR: 133221 Submitted by: Roland Smith <rsmith@xs4all.nl> (maintainer)
* Chase the goffice update.marcus2009-03-282-5/+5
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* - Fix for new ruby-gettextpav2009-03-251-3/+3
| | | | | | | - Update maintainer's email address PR: ports/133046 Submitted by: Shin'ya Murakami <murashin@epa.scitec.kobe-u.ac.jp> (maintainer)
* bump PORTREVISION after cmake updatemakc2009-03-252-2/+2
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* - Update to 0.98miwi2009-03-242-4/+4
| | | | | PR: 132971 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
* - Upgrade to 5.6.5;thierry2009-03-246-471/+2467
| | | | | | | | | | | | - Install libabinit; - Handle NOPORTDOCS and NOPORTEXAMPLES; - s/test/regression-test/; - Don't install under a versionned $PREFIX. Approved by: maho (maintainer)
* - Fix Fortran linkingpav2009-03-234-2/+26
| | | | | | | | - Add a slaveport so fortran enabled netcdf can be packaged PR: ports/132430 Submitted by: thierry Approved by: maintainer timeout (14 days)
* Geo::ReadGRIB is an object Perl module that provides readmiwi2009-03-225-0/+44
| | | | | | | | | | | access to data distributed in GRIB files. Specifically, it is wrote to access NOAA Wavewatch III marine weather model forecasts which are packaged as GRIB. WWW: http://search.cpan.org/dist/Geo-ReadGRIB/ PR: ports/132776 Submitted by: Wen Heping <wenheping at gmail.com>
* Update to 1.6.11.maho2009-03-174-17/+16
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* Fix plist with -DNOPORTDOCS.thierry2009-03-171-1/+1
| | | | Reportded by: QAT
* - Update to 11.6.17miwi2009-03-172-5/+5
| | | | | PR: 131733 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
* Mark as broken on sparc64: fails to compile.linimon2009-03-161-0/+4
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* Mark broken: fails to compile on i386 and sparc64.linimon2009-03-161-0/+2
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* Brian is a simulator for spiking neural networks available on almost allmiwi2009-03-165-0/+263
| | | | | | | | | | | | | | | | | platforms. The motivation for this project is that a simulator should not only save the time of processors, but also the time of scientists. Brian is easy to learn and use, highly flexible and easily extensible. The Brian package itself and simulations using it are all written in the Python programming language, which is an easy, concise and highly developed language with many advanced features and development tools, excellent documentation and a large community of users providing support and extension packages. WWW: http://www.briansimulator.org/ PR: ports/132155 Submitted by: Wen Heping <wenheping@gmail.com>
* - Mark BROKEN: does not compile (../include/ecif_userinterface_TCL.h:41:17:pav2009-03-131-0/+2
| | | | | | error: tcl.h: No such file or directory) Reported by: pointyhat
* Upgrade to version 3.4.3.thierry2009-03-072-4/+4
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* - Use my FreeBSD address on the ports I maintaindhn2009-03-071-1/+1
| | | | Approved by: tabthorpe (co-mentor)
* - Mark BROKEN on FreeBSD 6.x, does not compilepav2009-03-031-1/+7
| | | | Reported by: pointyhat
* PsychoPy is an open-source package for creating psychology stimulimiwi2009-03-015-0/+326
| | | | | | | | | | | | | | | | | in Python (A real and free alternative to Matlab). PsychoPy combines the graphical strengths of OpenGL with the easy Python syntax to give psychophysics a free and simple stimulus presentation and control package. The goal is to provide, for the busy scientist (including me!), tools to control timing and windowing and a simple set of pre-packaged stimuli and methods. The code is platform independent, using Python and C libraries that are widely available. WWW: http://www.psychopy.org/ PR: ports/132156 Submitted by: wenheping at gmail.com
* - Update to 0.7.0miwi2009-03-012-7/+5
| | | | | | PR: 131636 Submitted by: Wen Heping <wenheping@gmail.com> Approved by: maintainer
* - Update to 4.0.3miwi2009-03-019-258/+251
| | | | | | PR: 131655 Submitted by: Joerg Pulz <Joerg.Pulz@frm2.tum.de> Approved by: maintainer
* - Update description to reflect realityrafan2009-02-251-13/+22
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* Chase the goffice update.marcus2009-02-242-4/+5
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* netCDF version 4 has many features not found in earlier versions of themiwi2009-02-245-0/+56
| | | | | | | | | | | | | | | | | | | library and is implemented on top of HDF5. This module can read and write files in both the new netCDF 4 and the old netCDF 3 format, and can create files that are readable by HDF5 clients. The API modelled after Scientific.IO.NetCDF, and should be familiar to users of that module. Many new features of netCDF 4 are implemented, such as multiple unlimited dimensions, groups and zlib data compression. All the new primitive data types (such as 64 bit and unsigned integer types) are implemented, except variable-length strings (NC_STRING). User defined data types (compound, vlen, enum etc.) are not supported. WWW: http://code.google.com/p/netcdf4-python/ PR: ports/131866 Submitted by: wenheping at gmail.com
* - Change default Tcl/Tk version to 8.5mm2009-02-231-1/+1
| | | | | | - Bump PORTVERSION of ports affected Tested by: pointyhat (pav)
* Mark unconditionally BROKEN, EXPIRATION_DATE=2009-03-22.gerald2009-02-221-4/+3
| | | | Suggested by: pav
* Use my @FreeBSD.org email for the rest of my portsmakc2009-02-214-4/+4
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* - Mark as UNBROKEN on AMD64.araujo2009-02-201-9/+1
| | | | - It isn't necessary to use USE_FORTRAN.
* - Mark as BROKEN, both doesn't compile on amd64.araujo2009-02-192-4/+9
| | | | Reported by: pav (pointyhat)
* Fix build with gcc43.maho2009-02-171-0/+11
| | | | Spotted by pav
* Fix build with gcc43.maho2009-02-141-0/+20
| | | | Spotted by: pav
* Fix build with gcc43.maho2009-02-141-0/+21
| | | | | | | | | Fix obtained from http://www.bioinformatics.org/pipermail/ghemical-devel/2008-August/000752.html http://www.bioinformatics.org/pipermail/ghemical-devel/2008-July/000742.html . Spotted by: pav
* - Pass maintainership along.wxs2009-02-132-2/+2
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* - Update ImageMagick to 6.4.9.2mm2009-02-111-2/+2
| | | | | - Libraries Magick++, MagickCore and MagickWand bumped to 2 - Update all ports using libraries above
* Mark BROKEN.gerald2009-02-081-0/+2
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* No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now done viagerald2009-02-071-4/+2
| | | | | | Mk/bsd.gcc.mk. Remove trailing whitespace to appease portlint.
* Remove obsolete comment.gerald2009-02-021-1/+1
| | | | Approved by: thierry
* Update to 1.1.4maho2009-02-022-5/+4
| | | | Suggested by: pav@
* - Update to 1.3.0chinsan2009-02-012-19/+48
| | | | | | | | - Enable HDF5 1.8, netCDF 4 and proj by default - Reformat Makefile PR: ports/130720 Submitted by: sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
* - Distfile rerolled with minor change to configure scriptpav2009-01-313-5/+5
| | | | | | - Update download location Reported by: -fetch-original pointyhat run
* - Update download location, update WWWpav2009-01-312-2/+2
| | | | Reported by: -fetch-original pointyhat run
* Update my email address to @FreeBSD.org.beat2009-01-291-1/+1
| | | | Approved by: miwi (mentor)
* Upgrade to 1.3.3.thierry2009-01-277-14/+50
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* Upgrade to 1.3.3 and use gfortran43.thierry2009-01-276-128/+114
| | | | | Changelog at <http://rd.edf.com/the-edf-offers/research-and-development/softwares/code-saturne/code-saturne-news081127-en-601064.html>
* Upgrade to 0.12.0.thierry2009-01-274-6/+12
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* Upgrade to 1.0.8.thierry2009-01-273-5/+5
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* Fix science/afni after X.org 7.4 import (needs Xi).flz2009-01-241-1/+2
| | | | Reported by: pointyhat (via pav)
* - Update X.org ports to 7.4+ (few ports are more recent than the katamari).flz2009-01-246-10/+11
| | | | | | | | - Bump PORTREVISION for all ports depending on libglut since the shlib version number went from 4 to 3. - Bump PORTREVISION for all ports depending on libXaw as libXaw.so.8 isn't installed anymore. - Couple of ports fixes (mostly missing xorg components added to USE_XORG).
* - Chase lang/guile shlib bumpmiwi2009-01-231-2/+2
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* - Chase lang/guile shlib bumpmiwi2009-01-231-2/+2
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* - We need use FCFLAGS to build it in AMD64 and IA64.araujo2009-01-211-2/+2
| | | | - Bump PORTREVISION.
* - No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is nowaraujo2009-01-215-5/+0
| | | | | | done via Mk/bsd.gcc.mk. Reported by: gerald
* - Use USE_FORTRAN knobamdmi32009-01-201-6/+2
| | | | | PR: 130734 Submitted by: Shin'ya Murakami <murashin at gfd-dennou dot org> (maintainer)
* . Update to 1.12.9.glewis2009-01-202-5/+4
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* - Fix OPTIONS processingpav2009-01-201-1/+3
| | | | | PR: ports/130740 Submitted by: Shin'ya Murakami <murashin@gfd-dennou.org>
* Leverage USE_FORTRAN instead of accomplishing the same manually.gerald2009-01-191-5/+1
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* Do not explicitly pass F77 and FFLAGS to CONFIGURE_ENV, this is now donegerald2009-01-181-1/+1
| | | | | | | transparently. Approved by: Stephen Montgomery-Smith <stephen@math.missouri.edu> (maintainer)
* No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now done viagerald2009-01-181-1/+0
| | | | | | Mk/bsd.gcc.mk.And for this port, CONFIGURE_ENV was bogus to begin with. Submitted by: Steven Kreuzer <skreuzer@exit2shell.com>
* No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now done viagerald2009-01-181-1/+0
| | | | | | Mk/bsd.gcc.mk. Submitted by: Steven Kreuzer <skreuzer@exit2shell.com>
* - Actually mark it broken on FreeBSD 6.xpav2009-01-181-1/+1
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* - add LICENSE:dinoex2009-01-172-0/+4
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* pydicom is a pure python package for working with DICOM files. It wasmiwi2009-01-165-0/+187
| | | | | | | | | | | | made for inspecting and modifying DICOM files in an easy "pythonic" way. The modifications can be written again to a new file. As a pure python package, it should run anywhere python runs without any other requirements. WWW: http://code.google.com/p/pydicom/ PR: ports/130492 Submitted by: Wen Heping <wenheping at gmail.com>
* - Fix shlib symlinkpav2009-01-161-2/+2
| | | | Reported by: pointyhat
* - Mark BROKEN on FreeBSD 6.x: does not compilepav2009-01-151-0/+4
| | | | Reported by: pointyhat
* - Fix plistpav2009-01-142-1/+3
| | | | Reported by: pointyhat
* - Update to 0.9.2miwi2009-01-143-82/+52
| | | | | PR: 130446 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* Bump port revision by the former commit.maho2009-01-141-0/+1
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* Support shared lib by tewaking.maho2009-01-142-8/+33
| | | | Suggested by: pav@
* - Update to 0.10.3pav2009-01-147-380/+904
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* - Remove science/gchempaint, it has been integrated into science/gchemutilspav2009-01-145-192/+0
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* Update to 42r3 and unbreak for 7.maho2009-01-137-657/+21
| | | | Drop maintainership to ports@.
* - Chase gsl shlib bumpmiwi2009-01-134-6/+8
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* Update to 1.5.3.trasz2009-01-133-8/+9
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* Remove CONFIGURE_ENVmaho2009-01-124-5/+0
| | | | Submitted by: gerald@
* - Fix build with gfortran43pav2009-01-111-1/+2
| | | | | PR: ports/130351 Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu> (maintainer)
* Switch to USE_FORTRAN.thierry2009-01-101-5/+1
| | | | Submitted by: gerald
* No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV, this is now done viagerald2009-01-101-2/+1
| | | | | | Mk/bsd.gcc.mk. And for this port, CONFIGURE_ENV was bogus to begin with. Submitted by: Steven Kreuzer <skreuzer@exit2shell.com>
* - Unbreak distinfo after portrevision bumppav2009-01-101-1/+1
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* - fix inappropriate use of NO* varsstefan2009-01-092-28/+32
| | | | | | | | - add MASTER_SITES - change maintainer's email address PR: 127463 Submitted by: maintainer
* - update to 1.6.0stefan2009-01-093-256/+221
| | | | | | | | | | - fix inappropriate use of NO* vars - add mastersites - use COPYTREE_SHARE - change maintainer's email address PR: 127317 Submitted by: maintainer
* Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.gerald2009-01-0832-25/+32
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* - Mark BROKEN: bad depobj in java3d linepav2009-01-071-0/+2
| | | | Reported by: pointyhat
* - Remove conditional checks for FreeBSD 5.x and olderpav2009-01-072-5/+1
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* - remove unnecessary stripchinsan2009-01-023-14/+79
| | | | | | | | | - install real documents - fix NOPORTDOCS - add NOPORTEXAMPLES PR: ports/129225 Submitted by: sunpoet (maintainer)
* - Remove unused pkgmessage.chinsan2009-01-021-3/+0
| | | | Noticed by: sunpoet (maintainer)
* - Attach science/netcdf4chinsan2009-01-011-0/+1
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* - Update science/netcdf4 to 4.0chinsan2009-01-015-61/+104
| | | | | PR: ports/129418 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet dot net>
* Mark BROKEN on HEAD after the import of strndup(3).pav2008-12-271-0/+4
| | | | | | As OSVERSION was not bumped at the time, approximate with 800058. Submitted by: pointyhat via droso
* - Fix buildmiwi2008-12-251-0/+3
| | | | | | PR: 129788 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer) Reported by: pointyhat
* - Update to 0.2.0miwi2008-12-234-13/+18
| | | | | PR: 129652 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
* - Update to 2.0.4.2miwi2008-12-232-4/+4
| | | | | PR: 129661 Submitted by: Dennis Herrmann <adox@mcx2.org> (maintainer)
* - Update to 1.33rafan2008-12-222-4/+4
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* - Add OCFLAGS to make CFLAGS the same as distribution's by defaultrafan2008-12-222-9/+7
| | | | (this is preferable by the authors).
* - Update to 2.88rafan2008-12-223-11/+11
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* Fix plist.stefan2008-12-222-1/+1
| | | | Submitted by: QAT
* Update to 3.0.4.stefan2008-12-223-7/+40
| | | | | PR: 127905 Submitted by: maintainer
* Reset quakelee@cn.FreeBSD.org due to maintainer-timeouts and no responselinimon2008-12-161-1/+1
| | | | | | to email. Hat: portmgr
* - Update to 2.0.4.1miwi2008-12-132-5/+5
| | | | | | | - Pass maintainership to submitter PR: 129535 Submitted by: Dennis Herrmann <adox@mcx2.org>
* - Update to 2.4miwi2008-12-123-8/+66
| | | | | | PR: 128980 Submitted by: Yi-Jheng Lin <yzlin@cs.nctu.edu.tw> Approved by: maintainer
* Upgrade to 3.4.2.thierry2008-12-112-4/+4
| | | | Changelog at <http://inac.cea.fr/L_Sim/V_Sim/download.html#3.4.2>.
* Update to 1.5.2.trasz2008-12-072-5/+4
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* - Update to 1.2.1chinsan2008-11-262-4/+4
| | | | | PR: ports/128993 Submitted by: sunpoet (maintainer)
* - Connect hdf5-18miwi2008-11-241-0/+1
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* - Update to 1.8.2miwi2008-11-2410-247/+100
| | | | | | PR: 128988 Submitted by: Wen Heping <wenheping@gmail.com> Approved by: maintainer
* - Update to 1.6.8miwi2008-11-246-16/+8
| | | | | | PR: 128962 Submitted by: Wen Heping <wenheping@gmail.com> Approved by: maintainer
* Fix plist with NOPORTEXAMPLES.thierry2008-11-221-0/+3
| | | | Reported by: QAT
* Fix typo in previous commit and fix pist.itetcu2008-11-221-1/+1
| | | | Prompted by: QAT
* - use PORTEXAMPLES where appropiate and fix plist with NO* defineditetcu2008-11-222-16/+16
| | | | | | | | - pet portlint - bump PORTREVISION Approved by: maintainer timeout on QAT BotMail Prompted by: QAT QA run
* - Update to 0.99.11 [1]db2008-11-062-7/+6
| | | | | | | - Add hamradio to CATEGORIES - Add beat@chruetertee.ch as MAINTAINER (confirmed with beat via e-mail) PR: ports/127886 [1]
* - Fix plist/installation for WITH_PYTHON caseamdmi32008-10-302-2/+1
| | | | Submitted by: maintainer via private email
* - Update to 4.6.2amdmi32008-10-293-4/+7
| | | | | | | - Hide the regression-test under a MAINTAINER_MODE since skipped checks appear as failures PR: 128447 Submitted by: "Pedro F. Giffuni" <giffunip at tutopia dot com> (maintainer)
* - Cleanup the Makefile OPTIONS and correct some typos.lippe2008-10-191-5/+4
| | | | | | | | - This is in order to prepare for the update (which currently fails some regression tests). - No functional change. PR: ports/127099 Submitted by: Pedro F. Giffuni <giffunip@tutopia.com> (maintainer)
* - Update to 11.6miwi2008-10-163-14/+12
| | | | | PR: 128047 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
* - Fix typo (CUNFIGURE_ARGS)amdmi32008-10-031-2/+3
| | | | | | | | - Add USE_XORG (needed when built without gtk) PR: 127766 Submitted by: me Approved by: Shin'ya Murakami <murashin at gfd-dennou dot org> (maintainer)
* Modular toolkit for Data Processing (MDP) is a Python data processingmiwi2008-09-285-0/+167
| | | | | | | | | | | | | framework. Implemented algorithms include: Principal Component Analysis (PCA), Independent Component Analysis (ICA), Slow Feature Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), Gaussian Classifiers, and Restricted Boltzmann Machines. WWW: http://mdp-toolkit.sourceforge.net/ PR: ports/127338 Submitted by: Li-Lun Wang <llwang at infor.org>
* py-hcluster library provides Python functions formiwi2008-09-276-0/+61
| | | | | | | | | | | | | | | | | | | agglomerative clustering. Its features include * generating hierarchical clusters from distance matrices * computing distance matrices from observation vectors * computing statistics on clusters * cutting linkages to generate flat clusters * and visualizing clusters with dendrograms. The interface is very similar to MATLAB's Statistics Toolbox API to make code easier to port from MATLAB to Python/Numpy. The core implementation of this library is in C for efficiency. WWW: http://code.google.com/p/scipy-cluster/ PR: ports/127515 Submitted by: Wen Heping <wenheping at gmail.com>
* - Fix inappropriate use of NO*varsmiwi2008-09-262-406/+376
| | | | | | | | | - Add backup mirrors - Use COPYTREE_SHARE - Update maintainer's email address PR: 127315 Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
* - Fix inappropriate use of NO*varsmiwi2008-09-262-395/+365
| | | | | | | | | - Add backup MASTER_SITES - Use COPYTREE_SHARE - Update maintainer's email address PR: 127314 Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
* - Set NOT_FOR_ARCHS for sparc64gahr2008-09-161-0/+3
| | | | Approved by: portmgr (pav)
* - Update patch distribution site and fix patch proceduregahr2008-09-112-4/+11
| | | | Approved by: portmgr (erwin)
* Fix plist with NOPORTDOCS.thierry2008-09-071-5/+5
| | | | Reported by: QAT
* upgrade to 0.99.10ijliao2008-09-073-13/+13
| | | | drop maintainership
* - Fix build with jdk16miwi2008-09-071-5/+20
| | | | | PR: 127112 Submitted by: maintainer
* Upgrade to v. 3.4.1.thierry2008-09-063-20/+10
| | | | | Changelog at <http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/download.html#3.4>.
* - Add experimental option for Chaco.amdmi32008-09-061-5/+9
| | | | | | | | - Remove BROKEN for Metis option: it builds fine - Remove BROKENness for 4.x, we don't check that anymore. PR: 126696 Submitted by: Pedro Giffuni <pfgshield-freebsd at yahoo dot com>
* - update to 1.07leeym2008-09-022-5/+11
|
* - Fix a typomiwi2008-08-291-1/+1
| | | | | PR: 126647 Submitted by: Wen heping <wenheping@gmail.com> (maintainer)
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