| Commit message (Collapse) | Author | Age | Files | Lines |
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- Bump PORTREVISION.
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done via Mk/bsd.gcc.mk.
Reported by: gerald
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PR: 130734
Submitted by: Shin'ya Murakami <murashin at gfd-dennou dot org> (maintainer)
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PR: ports/130740
Submitted by: Shin'ya Murakami <murashin@gfd-dennou.org>
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transparently.
Approved by: Stephen Montgomery-Smith <stephen@math.missouri.edu>
(maintainer)
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Mk/bsd.gcc.mk.And for this port, CONFIGURE_ENV was bogus to begin with.
Submitted by: Steven Kreuzer <skreuzer@exit2shell.com>
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Mk/bsd.gcc.mk.
Submitted by: Steven Kreuzer <skreuzer@exit2shell.com>
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made for inspecting and modifying DICOM files in an easy "pythonic"
way. The modifications can be written again to a new file. As a pure
python package, it should run anywhere python runs without any other
requirements.
WWW: http://code.google.com/p/pydicom/
PR: ports/130492
Submitted by: Wen Heping <wenheping at gmail.com>
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Reported by: pointyhat
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Reported by: pointyhat
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Reported by: pointyhat
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PR: 130446
Submitted by: KATO Tsuguru <tkato432@yahoo.com>
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Suggested by: pav@
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Drop maintainership to ports@.
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Submitted by: gerald@
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PR: ports/130351
Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu> (maintainer)
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Submitted by: gerald
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Mk/bsd.gcc.mk. And for this port, CONFIGURE_ENV was bogus to begin with.
Submitted by: Steven Kreuzer <skreuzer@exit2shell.com>
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- add MASTER_SITES
- change maintainer's email address
PR: 127463
Submitted by: maintainer
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- fix inappropriate use of NO* vars
- add mastersites
- use COPYTREE_SHARE
- change maintainer's email address
PR: 127317
Submitted by: maintainer
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Reported by: pointyhat
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- install real documents
- fix NOPORTDOCS
- add NOPORTEXAMPLES
PR: ports/129225
Submitted by: sunpoet (maintainer)
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Noticed by: sunpoet (maintainer)
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PR: ports/129418
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet dot net>
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As OSVERSION was not bumped at the time, approximate with 800058.
Submitted by: pointyhat via droso
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PR: 129788
Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
Reported by: pointyhat
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PR: 129652
Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
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PR: 129661
Submitted by: Dennis Herrmann <adox@mcx2.org> (maintainer)
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(this is preferable by the authors).
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Submitted by: QAT
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PR: 127905
Submitted by: maintainer
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to email.
Hat: portmgr
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- Pass maintainership to submitter
PR: 129535
Submitted by: Dennis Herrmann <adox@mcx2.org>
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PR: 128980
Submitted by: Yi-Jheng Lin <yzlin@cs.nctu.edu.tw>
Approved by: maintainer
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Changelog at <http://inac.cea.fr/L_Sim/V_Sim/download.html#3.4.2>.
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PR: ports/128993
Submitted by: sunpoet (maintainer)
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PR: 128988
Submitted by: Wen Heping <wenheping@gmail.com>
Approved by: maintainer
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PR: 128962
Submitted by: Wen Heping <wenheping@gmail.com>
Approved by: maintainer
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Reported by: QAT
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Prompted by: QAT
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- pet portlint
- bump PORTREVISION
Approved by: maintainer timeout on QAT BotMail
Prompted by: QAT QA run
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- Add hamradio to CATEGORIES
- Add beat@chruetertee.ch as MAINTAINER (confirmed with beat via e-mail)
PR: ports/127886 [1]
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Submitted by: maintainer via private email
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- Hide the regression-test under a MAINTAINER_MODE since skipped checks appear as failures
PR: 128447
Submitted by: "Pedro F. Giffuni" <giffunip at tutopia dot com> (maintainer)
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- This is in order to prepare for the update (which currently fails some regression tests).
- No functional change.
PR: ports/127099
Submitted by: Pedro F. Giffuni <giffunip@tutopia.com> (maintainer)
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PR: 128047
Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)
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- Add USE_XORG (needed when built without gtk)
PR: 127766
Submitted by: me
Approved by: Shin'ya Murakami <murashin at gfd-dennou dot org> (maintainer)
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framework. Implemented algorithms include: Principal Component
Analysis (PCA), Independent Component Analysis (ICA), Slow Feature
Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural
Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), Gaussian
Classifiers, and Restricted Boltzmann Machines.
WWW: http://mdp-toolkit.sourceforge.net/
PR: ports/127338
Submitted by: Li-Lun Wang <llwang at infor.org>
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agglomerative clustering. Its features include
* generating hierarchical clusters from distance matrices
* computing distance matrices from observation vectors
* computing statistics on clusters
* cutting linkages to generate flat clusters
* and visualizing clusters with dendrograms.
The interface is very similar to MATLAB's Statistics
Toolbox API to make code easier to port from MATLAB to
Python/Numpy. The core implementation of this library
is in C for efficiency.
WWW: http://code.google.com/p/scipy-cluster/
PR: ports/127515
Submitted by: Wen Heping <wenheping at gmail.com>
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- Add backup mirrors
- Use COPYTREE_SHARE
- Update maintainer's email address
PR: 127315
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
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- Add backup MASTER_SITES
- Use COPYTREE_SHARE
- Update maintainer's email address
PR: 127314
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
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Approved by: portmgr (pav)
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Approved by: portmgr (erwin)
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Reported by: QAT
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drop maintainership
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PR: 127112
Submitted by: maintainer
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Changelog at
<http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/download.html#3.4>.
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- Remove BROKEN for Metis option: it builds fine
- Remove BROKENness for 4.x, we don't check that anymore.
PR: 126696
Submitted by: Pedro Giffuni <pfgshield-freebsd at yahoo dot com>
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PR: 126647
Submitted by: Wen heping <wenheping@gmail.com> (maintainer)
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Reported by: QA Tindie
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Spotted by: QAT
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Specifically, newer autoconf (> 2.13) has different semantic of the
configure target. In short, one should use --build=CONFIGURE_TARGET
instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning
and the old semantic may be removed in later autoconf releases.
To workaround this issue, many ports hack the CONFIGURE_TARGET variable
so that it contains the ``--build='' prefix.
To solve this issue, under the fact that some ports still have
configure script generated by the old autoconf, we use runtime detection
in the do-configure target so that the proper argument can be used.
Changes to Mk/*:
- Add runtime detection magic in bsd.port.mk
- Remove CONFIGURE_TARGET hack in various bsd.*.mk
- USE_GNOME=gnometarget is now an no-op
Changes to individual ports, other than removing the CONFIGURE_TARGET hack:
= pkg-plist changed (due to the ugly CONFIGURE_TARGET prefix in * executables)
- comms/gnuradio
- science/abinit
- science/elmer-fem
- science/elmer-matc
- science/elmer-meshgen2d
- science/elmerfront
- science/elmerpost
= use x86_64 as ARCH
- devel/g-wrap
= other changes
- print/magicfilter
GNU_CONFIGURE -> HAS_CONFIGURE since it's not generated by autoconf
Total # of ports modified: 1,027
Total # of ports affected: ~7,000 (set GNU_CONFIGURE to yes)
PR: 126524 (obsoletes 52917)
Submitted by: rafan
Tested on: two pointyhat 7-amd64 exp runs (by pav)
Approved by: portmgr (pav)
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This is for the OpenGL stuff.
See also:
http://www.bioinformatics.org/pipermail/ghemical-devel/2007-September/000688.html
WWW: http://www.uku.fi/~thassine/projects/ghemical/
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Tested by: exp build run (erwin)
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- Respect NOPORTEXAMPLES;
- Release maintainership.
Security: VuXML c4f31e16-6e33-11dd-8eb7-0011098ad87f
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PR: 126602
Submitted by: Ports Fury
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PR: 126586
Submitted by: Wen heping <wenheping@gmail.com> (maintainer)
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- This port is unrelated with x11/silo so I suppose
NO_LATEST_LINK is relevant.
- While here, remove the unnecessary $LOCALBASE includes
in CPPFLAGS/LDFLAGS for the configure environment.
PR: ports/126614
Submitted by: "Pedro F. Giffuni" <giffunip@tutopia.com>
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PR: ports/126610
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
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Reported by: IonBot
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- It's off by default as it doesn't seem to be required by any port.
- No functional change.
PR: ports/125915
Submitted by: Pedro F. Giffuni <pfgshield-freebsd@yahoo.com>
Approved by: maintainer timeout (>2 Weeks)
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Submitted by: Pedro Giffuni <pfgshield-freebsd@yahoo.com> (maintainer)
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FreeBSD versions: 5.3 and up, 6.x, 7.x, 8-CURRENT
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MAKE_ENV
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- Remove options
Submitted by: Pedro F. Giffuni <giffunip@yahoo.com> (maintainer)
Reported by: pointyhat via pav
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* Build fix with
NOPORTDOCS=yes, NOPORTEXAMPLES=yes, NOPORTDATA=yes, FORCE_PACKAGE=yes [1].
Spotted by: itetcu [1]
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- While here, rename the BROWSER option to SILEXB to avoid confusion.
- No version bump since no package has been built.
PR: ports/125846
Submitted by: Pedro F. Giffuni <giffunip@tutopia.com> (maintainer)
Reported by: pointyhat via erwin
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- Bump PORTREVISION
PR: ports/125435
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A mesh and field I/O library and scientific database
Silo is a library for reading and writing a wide variety of scientific
data to binary, disk files. The files Silo produces and the data within
them can be easily shared and exchanged between wholly independently
developed applications running on disparate computing platforms.
Consequently, Silo facilitates the development of general purpose tools
for processing scientific data. One of the more popular tools that process
Silo data files is the VisIt visualization tool.
Silo supports gridless (point) meshes, structured meshes, unstructured-zoo
and unstructured-arbitrary-polyhedral meshes, block structured AMR meshes,
constructive solid geometry (CSG) meshes, piecewise-constant (e.g.
zone-centered) and piecewise-linear (e.g. node-centered) variables defined
on the node, edge, face or volume elements of meshes as well as the
decomposition of meshes into arbitrary subset hierarchies including
materials and mixing materials. In addition, Silo supports a wide variety
of other useful objects to address various scientific computing
application needs.Although the Silo library is a serial library, it has
some key features which enable it to be applied quite effectively and
scalably in parallel.
PR: ports/125725
Submitted by: Pedro F. Giffuni <giffunip at tutopia.com>
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installing.
- Fix distinfo
- Bump portrevision
PR: ports/125550
Submitted by: Pedro F. Giffuni <pfgshield-freebsd@yahoo.com>
Approved by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer, with changes)
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PR: 125633
Submitted by: Wen heping <wenheping@gmail.com>
Approved by: clsung (implicit)
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WWW: http://openbabel.sourceforge.net
PR: ports/125768
Submitted by: Max Brazhnikov <makc at issp.ac.ru>
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PR: 125749
Submitted by: Wen heping <wenheping@gmail.com>
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PR: 125728
Submitted by: Max Brazhnikov <makc@issp.ac.ru>
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PR: ports/125483
Submitted by: Anders Troback <freebsd troback.com> (maintainer)
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- Require GCC 4.2 on 6.x to fix build against openbabel
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PR: ports/125027
Submitted by: Anders Troback <freebsd troback.com> (maintainer)
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Reported by: ionbot, pavbot
Approved by: maintainer via im
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- Pass maintainership to submitter
PR: ports/125335
Submitted by: Max Brazhnikov <makc@issp.ac.ru>
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PR: ports/125312
Submitted by: Max Brazhnikov <makc@issp.ac.ru> (maintainer)
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PR: ports/124871
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net> (maintainer)
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- This also resulted in cleanups to the build
- No functional change
PR: 124785
Submitted by: Pedro F. Giffuni <giffunip@tutopia.com>
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PR: ports/124672
Submitted by: Igor Serikov <bt@turtle.freedns.us> (maintainer)
Approved by: gabor (mentor, implicit)
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- Respect NOPORTEXAMPLE/NOPORTDOCS [1]
PR: 124695
Submitted by: Wen heping <wenheping@gmail.com>
miwi [1]
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The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).
PR: ports/124340
Submitted by: edwin@
Approved by: portmgr (pav)
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almost complete coverage of the netCDF C API, wrapping it inside easy to
use python classes.
WWW: http://pysclint.sourceforge.net/pycdf/
PR: ports/123303
Submitted by: wenheping at gmail.com
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Changelog at <http://inac.cea.fr/L_Sim/V_Sim/index.en.html>.
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appreciate all the help in the past.
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- Pass maintainership to submitter
PR: 124178
Submitted by: Wen heping <wenheping@gmail.com>
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- Fix NOPORTEXAMPLES
PR: 121731
Submitted by: TAOKA Fumiyoshi <fmysh@iijmio-mail.jp> [1]
miwi
Approved by: maintainer
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- Update devel/cmake to 2.6.0 (also fix ports/123092)
- Use the new CMAKE build framework in all ports using cmake
Approved by: portmgr (pav)
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Suggested by: itetcu
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matching and rewriting
2d-rewriter is fractals generator based on pattern matching
and rewriting. The program takes input containing initial
object placement and rewriting rules and keeps applying
rules to the data field until it reaches an arrangement
where no rules can be applied.
PR: ports/118906
Submitted by: Igor Serikov <bt@turtle.freedns.us>
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Approved by: portmgr (self)
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Notified by: itetcu
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Changelog at <http://inac.cea.fr/L_Sim/V_Sim/index.en.html>.
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three-dimensional chemical structures.
Features include reading a variety
of file types and output from quantum
chemistry programs, and animation of
multi-frame files and computed normal
modes from quantum programs.
WWW: http://sourceforge.net/projects/jmol/
PR: ports/123631
Submitted by: Wen heping <wenheping at gmail.com>
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PR: ports/122488
Submitted by: Bjoern Koenig <bkoenig@cs.tu-berlin.de> (maintainer)
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Reported by: pointyhat via Pav
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Submitted by: maintainer
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Reported by: pav
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- cleanup MASTER_SITES
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- Unbundle libgfx from qslim
- Chase the conversion in vis5d+
Suggested by: thierry [1]
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PR: 123233
Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu> (maintainer)
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consists of several free Java libraries, for user convenience bundled under one
single uniform umbrella. Namely the Colt library, the Jet library, the CoreJava
library, and the Concurrent library.
The Colt library provides fundamental general-purpose data structures optimized
for numerical data, such as resizable arrays, dense and sparse matrices
(multi-dimensional arrays), linear algebra, associative containers and buffer
management.
WWW: http://dsd.lbl.gov/~hoschek/colt/
PR: 122913
Submitted by: Wen heping <wenheping@gmail.com>
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Code_Saturne 1.3.2 contains important corrections in the extended
neighbourhood (used for gradient calculation with options IMRGRA=2 and 3
and for the LES dynamic model), in the steady-state algorithm and for
rotation periodicity. Therefore it is strongly advised to upgrade to
version 1.3.2. Earlier releases of version 1.3 (especially versions 1.3.f
and 1.3.1) are considered obsolete and have been removed from the website.
Note: the pdf handbooks don't build at the moment, but they are
available from the Code_Saturne's main site.
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PR: 122503
Submitted by: Ports Fury
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Reported by: miwi
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PR: ports/123023
Submitted by: Max Brazhnikov <makc at issp.ac.ru> (maintainer)
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Pointyhat to: mi@
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- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+
Thanks to all Helpers:
Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
ehaupt, nox, itetcu, flz, pav
PR: 116263
Tested on: pointyhat
Approved by: portmgr (pav)
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PR: ports/122656
Submitted by: EelVex <mplekos physics.upatras.gr> (maintainer)
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${MASTER_SITE_PERL_CPAN} to CPAN.
PR: ports/122674
Submitted by: Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by: araujo (myself)
Approved by: portmgr (pav)
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Approved by: miwi (mentor)
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Approved by: miwi (mentor)
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PR: ports/122667
Submitted by: maintainer (Sunpoet Po-Chuan Hsieh)
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installed).
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Requested over: IRC
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With hat: portmgr
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PR: ports/122494
Submitted by: dikshie <dikshie at lapi.itb.ac.id>
Approved by: Li-Lun "Leland" Wang <llwang at infor.org> (maintainer)
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Approved by: thierry (mentor)
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Changelog at
<https://sourceforge.net/project/shownotes.php?group_id=74444&release_id=583114>
Reported by: portscout
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- Pass maintainership to submitter
- Enable 64-bit support (experimental per stated by the project web page)
PR: ports/122337
Submitted by: Wen heping <wenheping at gmail.com>
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Changes:
PR: ports/121261
Submitted by: maintainer ("Shin'ya Murakami")
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- Fix BUILD_DEPENDS.
- Change depending library name. (ports/121284)
- Remove BROKEN on amd64. (ports/121284)
Changes:
PR: ports/121285
Submitted by: maintainer ("Shin'ya Murakami")
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- Bump PORTREVISION
Approved by: portmgr (xorg cleanup)
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- Bump PORTREVISION
Approved by: portmgr (xorg cleanup)
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- Bump PORTREVISION
Approved by: portmgr (xorg cleanup)
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- Bump PORTREVISION
Approved by: portmgr (xorg cleanup)
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- Bump PORTREVISION
Approved by: portmgr (xorg cleanup)
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- Bump PORTREVISION
Approved by: portmgr (xorg cleanup)
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- Bump PORTREVISION
Approved by: portmgr (xorg cleanup)
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- Bump PORTREVISION
Approved by: portmgr (xorg cleanup)
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- Unbreak BROKEN with hdf5-1.6.7.
- use USE_LDCONFIG for installing shared libraries.
PR: ports/121408
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net>
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Reported by: erwin
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- Project was migrated for SF.
- Files as repacked.
- BUMP PORTREVISION.
Reported by: Pedro <pfgshield-freebsd@yahoo.com>
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- Remove hardcoded version in packing list.
- Add -fPIC to CFLAGS on amd64.
PR: ports/121284
Submitted by: maintainer
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(due to the maximum ftp.hdfgroup.org number of allowed clients is 20.)
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- Sort pkg-plist
PR: ports/121195
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net>
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WWW: http://graphics.stanford.edu/projects/dti/
PR: ports/120129
Submitted by: Jason W. Bacon <jwbacon at tds.net>
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PR: ports/120299
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet (at) sunpoet.net> (maintainer)
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PR: 120624
Submitted by: Roland Smith <rsmith@xs4all.nl> (maintainer)
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Changes:
PR: ports/119040
Submitted by: Shin'ya Murakami <murakami_AT_ahs dot scitec dot kobe-u dot ac dot jp>
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PR: ports/119961
Submitted by: Jason Bacon <bacon smithers.neuro.mcw.edu> (maintainer)
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- s/INSTALLS_SHLIB/USE_LDCONFIG/ while I am here
PR: ports/119251
Submitted by: Oliver Dunkl <odunkl gmx.net> (maintainer)
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- Pass maintainership to Max Brazhnikov
PR: ports/119276
Submitted by: Kay Lehmann <kay_lehmann at web.de> (maintainer)
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Submitted by: pointyhat via pav
Approved by: stas (mentor, implicit)
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PR: 117888
Submitted by: David <yeti@gwyddion.net> (maintainer)
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PR: 118604
Submitted by: KATO Tsuguru <tkato432@yahoo.com>
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PR: 118620
Submitted by: KATO Tsuguru <tkato432@yahoo.com>
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PR: ports/118228
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
Approved by: Quincey Koziol <koziol@hdfgroup.org> (maintainer), stas (mentor, implicit)
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Changelog at
<https://sourceforge.net/project/shownotes.php?release_id=551476>.
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Changelog at
<ftp://cdaweb.gsfc.nasa.gov/pub/cdf/dist/cdf32/unix/CHANGES.txt>.
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Changelog at
<http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/changelog.en.html#3.3>.
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yet to know if it will fail on the other branches.
Approved by: portmgr (self)
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the port can be upgraded to the newest version after the freeze.
Approved by: portmgr (self), Quincey Koziol <koziol@hdfgroup.org> (maintainer)
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instead of -lpthread.
Approved by: portmgr (linimon)
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Reported by: pointyhat (pav)
Approved by: portmgr (linimon), stas (mentor, implicit)
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Approved by: portmgr (pav), stas (mentor, implicit)
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Approved by: stas (mentor)
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Approved by: stas (mentor)
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Approved by: stas (mentor)
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gfortran has intrinsic etime and we should use it.
Submitted by: linimon
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Reported by: pointyhat
Pointy hat to: araujo
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PR: ports/117506
Submitted by: sunpoet(maintainer)
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Missed by: ijliao
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GNOME 2.20 release notes can be found at
http://www.gnome.org/start/2.20/notes/en/ . Beyond that, this update
includes the new GIMP 2.4 (courtesy of ahze).
The GNOME 2.20 update also includes a huge change in the FreeBSD GNOME
hierarchy. We are now using the more standard DATADIR of ${PREFIX}/share
rather than ${PREFIX}/share/gnome. The result is that fewer patches and
hacks are needed to port GNOME components to FreeBSD. This will mean some
user changes may be required, so be sure to read /usr/ports/UPDATING for
more details.
This release and the things we accomplished in it would not have been
possible without mezz's crazy idea to collapse DATADIR, and his persistence
to make it happen successfully. Ahze and pav also deserve thanks for
their work on porting modules and testing the whole ball of wax on
pointyhat (respectively).
The FreeBSD GNOME team would also like to thank our various testers and
contributors:
Yasuda Keisuke
Frank Jahnke
Pawel Worach
Brian Gruber
Franz Klammer
Yuri Pankov
Nick Barkas
Cristian KLEIN
Tony Maher
Scot Hetzel
Martin Matuska (mm)
Benoit Dejean
Martin Wilke (miwi)
(And anyone else I may have missed)
PRs fixed in this release:
111272, 113470, 115995, 116338
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to fix the fetch. This will also allow me to flush a bad distfile on ftp.
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PR: 117086
Tested by: -exp runs
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PR: ports/113750
Submitted by: Max Brazhnikov <makc@issp.ac.ru>,
Kay Lehmann <kay_lehmann@web.de> (maintainer)
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- Now we use USE_FORTRAN=yes to use FORTRAN compiler.
PR: ports/114805
Submitted by: Kay Lehmann <kay_lehmann@web.de> (maintainer)
Approved by: stas (mentor)
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2. install mpcdata as well.
Submitted by: "M. L. Dodson" <activesitedynamics@comcast.net>
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