| Commit message (Collapse) | Author | Age | Files | Lines |
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seismogram files in the WAV(audio) format. The data are squeezed to
audible frequencies.
ObsPy is an open-source project dedicated to provide a Python framework
for processing seismological data. It provides parsers for common
file formats and seismological signal processing routines which allow
the manipulation of seismological time series (see Beyreuther et. al.
2010). The goal of the ObsPy project is to facilitate rapid application
development for seismology.
WWW: http://www.obspy.org/
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scientific data in the free, portable HDF5 format.
Besides providing a simple tool for batch visualization as PNG images,
h5utils also includes programs to convert HDF5 datasets into the formats
required by other free visualization software (e.g. plain text, Vis5d,
and VTK).
WWW: http://ab-initio.mit.edu/wiki/index.php/H5utils
PR: ports/155482
Submitted by: Klaus Aehlig <aehlig at linta.de>
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PR: 155654
Submitted by: TAOKA Fumiyoshi <fmysh@iijmio-mail.jp>
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PR: ports/155584
Submitted by: Rob Farmer (maintainer)
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7.X and up, for removal in one month
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to be exact) prevents the download of files named *.core, use py-obspy-core instead
Thanks to: dougb@, cperciva@, demelier.david@gmail.com
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for ObsPy. It includes UTCDateTime, Stats, Stream and Trace
classes and methods for reading seismograms.
ObsPy is an open-source project dedicated to provide a Python
framework for processing seismological data. It provides
parsers for common file formats and seismological signal
processing routines which allow the manipulation of
seismological time series (see Beyreuther et. al. 2010).
The goal of the ObsPy project is to facilitate rapid application
development for seismology.
WWW: http://www.obspy.org/
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for seismology. Capabilities include filtering, triggering,
rotation, instrument correction and coordinate transformations.
ObsPy is an open-source project dedicated to provide a Python
framework for processing seismological data. It provides parsers
for common file formats and seismological signal processing
routines which allow the manipulation of seismological time
series (see Beyreuther et. al. 2010). The goal of the ObsPy
project is to facilitate rapid application development for seismology.
WWW: http://www.obspy.org/
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of Stefan Stange (http://www.orfeus-eu.org/Software/softwarelib.html#gse).
Currently CM6 compressed GSE2 files are supported, this should be sufficient
for most cases. Gse_functions are written in C and interfaced via Python
ctypes.
WWW: http://www.obspy.org/
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library of Chad Trabant. Libmseed is written in C and interfaced
via Python ctypes.
WWW: http://www.obspy.org/
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for ObsPy. It includes UTCDateTime, Stats, Stream and Trace
classes and methods for reading seismograms.
ObsPy is an open-source project dedicated to provide a Python
framework for processing seismological data. It provides
parsers for common file formats and seismological signal
processing routines which allow the manipulation of
seismological time series (see Beyreuther et. al. 2010).
The goal of the ObsPy project is to facilitate rapid application
development for seismology.
WWW: http://www.obspy.org/
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where no distfiles can be found and are not used by maintained ports
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Changes: http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR: ports/155458
Submitted by: Rob Farmer <rfarmer AT predatorlabs.net>
Approved by: Quincey Koziol <koziol AT hdfgroup.org> (maintainer)
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Noticed by: "Klaus T. Aehlig" <aehlig at linta dot de>
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BUFR is approved by WMO (World Meteorological Organization) as the standard
universal exchange format for meteorological observations, gradually
replacing a lot of older alphanumeric data formats.
This module provides methods for decoding and encoding BUFR messages, and
for displaying information in BUFR B and D tables and in BUFR flag and code
tables.
Installing this module also installs some programs: bufrread.pl,
bufrresolve.pl, bufrencode.pl, bufr_reencode.pl and bufralter.pl. See
https://wiki.met.no/bufr.pm/start for examples of use. For the majority of
potential users of Geo::BUFR I would expect these programs to be all that
you will need Geo::BUFR for.
WWW: http://search.cpan.org/dist/Geo-BUFR/
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applications. The package includes: Bayes Regression (univariate or
multivariate dep var), Bayes Seemingly Unrelated Regression (SUR), Binary and
Ordinal Probit, Multinomial Logit (MNL) and Multinomial Probit (MNP),
Multivariate Probit, Negative Binomial (Poisson) Regression, Multivariate
Mixtures of Normals (including clustering), Dirichlet Process Prior Density
Estimation with normal base, Hierarchical Linear Models with normal prior and
covariates, Hierarchical Linear Models with a mixture of normals prior and
covariates, Hierarchical Multinomial Logits with a mixture of normals prior
and covariates, Hierarchical Multinomial Logits with a Dirichlet Process
prior and covariates, Hierarchical Negative Binomial Regression Models,
Bayesian analysis of choice-based conjoint data, Bayesian treatment of linear
instrumental variables models, and Analysis of Multivariate Ordinal survey
data with scale usage heterogeneity (as in Rossi et al, JASA (01)).
WWW: http://www.perossi.org/home/bsm-1
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to the R users. It has grown and I think it can be of interest for
the users wanting to implement their own training algorithms as well as
for those others whose needs lye only in the "user space".
WWW: http://rwiki.sciviews.org/doku.php?id=packages:cran:amore
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PR: ports/155217
Submitted by: maintainer
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Reported by: pointyhat via Pav
PR: ports/154736
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Changes: https://code.zmaw.de/news/41
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Pick up maintainer [1]
Remove broken check for 6.x.
Approved by: pav@ [1] (previous maintainer)
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switch some dependencies from science/hdf5 to science/hdf5-18.
As a side note: I think that all ports depending on science/hdf5
could be switched to science/hdf5-18, by defining H5_USE_16_API
when necessary, and then science/hdf5 could be deprecated.
PR: ports/154736
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Changelog at
<https://sourceforge.net/projects/cgns/files/cgnslib_2.5/Release%205/>
- Set the license.
PR: ports/154735
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Since I'm there, pet portlint where needed, e.g. by removing oblsolete
MD5 checksums.
PR: ports/154715
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- While here kick md5 support
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Reported by: pointyhat
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mathematical calculations, beyond the capabilities offered by SciPy.
* enthought.interpolate
* enthought.mathematics
* enthought.units
WWW: http://pypi.python.org/pypi/SciMath/
PR: ports/154351
Submitted by: Wen Heping (myself)
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ChangeLog: http://search.cpan.org/src/YAPPO/Geo-Coordinates-Converter-0.10/Changes
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PR: 154481
Submitted by: chris petrik <c.petrik.sosa@gmail.com> (maintainer)
Feature safe: yes
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Changes:
- Eliminate expectation and use of leading scale factor in the "have"
unit of udunits2(1).
- Add verification of commit status to "make ftp".
- Add dependency of documentation on version.
- Add "force" flag to tagging rule in makefile.
Feature safe: yes
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While here, pet portlint.
Hat: portmgr
Feature safe: yes
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Reported by: QAT@
Feature safe: yes
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- Add option: DEBUG
Changes: http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR: ports/153400 (based on)
Submitted by: Rob Farmer <rfarmer@predatorlabs.net>
Approved by: maintainer (timeout, 17 days)
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is designed to produce publication-ready Postscript or PDF
output. SVG, EMF and bitmap formats export are also supported.
The program runs under Unix/Linux, Windows or Mac OS X, and
binaries are provided. Data can be read from text, CSV or FITS
files, and data can be manipulated or examined from within the
application.
WWW: http://home.gna.org/veusz/
PR: ports/153686
Submitted by: Stas Timokhin <devel@stasyan.com>
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ChangeLog: http://search.cpan.org/src/YAPPO/Geo-Coordinates-Converter-0.08/Changes
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PR: ports/153292
Submitted by: myself (pgollucci)
Tested by: -exp run by pav
Approved by: portmgr (pav)
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format and datum of geo coordinates are simply converted. when it is
insufficient in the coordinate system and the format of the standard, it
is possible to add it easily.
WWW: http://search.cpan.org/dist/Geo-Coordinates-Converter/
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Approved by: jadawin (mentor)
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Changes:
- Added "fahrenheit" as an alias for "degrees fahrenheit".
- Added hyperlinks from HTML documentation to XML files of the units database.
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- Remove MD5
PR: ports/153299
Submitted by: Kawaguti Ginga <ginga-freebsd@ginganet.org>
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to fix a runtime error (the "ARCH" value is not set)
- Bump PORTREVISION
- Remove MD5 checksum from distinfo
- Set ONLY_FOR_ARCHS (i386 and amd64)
PR: ports/152955
Submitted by: Benjamin Kaduk <kaduk-fbsd at mit.edu> (maintainer)
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- Disable broken Mangled Mesa support.
- Add GL2PS knob.
- Disable conflict with vtk 5.
- Use bsd.port.options.mk.
- Fix COMMENT.
PR: ports/153163
Submitted by: Stas Timokhin <devel@stasyan.com> (maintainer)
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Submitted by: Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Approved by: Anders Troback <freebsd@troback.com> (maintainer)
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it's dependencies)
Reported by: pointyhat
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tree-churn on updates.
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Pass maintainerhsip to submitter
PR: ports/151753
Submitted by: Chris Petrik <c.petrik.sosa at gmail.com>
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Approved by: itetcu (implicit)
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Remove stale warning.
PR: ports/152372
Submitted by: Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Approved by: Anders Troback <freebsd@troback.com> (maintainer)
itetcu (implicit)
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Reported by: pointyhat and QAT
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It corrects some minor mistakes including XSF file format, colourisation
issues or node duplication.
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Bump PORTREVISION
Reported by: QAT, pointyhat
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PR: ports/151888
Submitted by: Florian Smeets <flo@smeets.im> (maintainer)
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- Bump PORTREVISIOON
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PR: ports/151868
Approved by: maho (maintainer)
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libBioLCCC is an open source library for prediction of peptide and
protein retention time in liquid chromatography. It is based on
BioLCCC model (Liquid Chromatography of Biomacromolecules at Critical
Conditions).
pyBioLCCC is set of Python wrappings around libBioLCCC.
WWW: http://theorchromo.ru/lib/
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script can find it
- Install header file for svm library so others can use
- Bump PORTREVISION
Submitted by: jsa@
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PR: ports/151700
Submitted by: Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Approved by: Anders Troback <freebsd@troback.com> (maintainer)
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Fix configure to allow build by non-root user (it tests if /usr/local is writable)
Remove MD5 from distinfo
PR: ports/151883
Submitted by: Rob Farmer (maintainer)
Reported & tested by: Wasp <wasp at gmx.ch> [1]
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Reported by: pointyhat
Approved by: pgollucci (mentor, implicit)
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Approved by: sahil@ (mentor)
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We are now allowed by the author to distribute the sources.
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PR: ports/151233
Submitted by: Li-Lun Wang (Leland Wang) <llwang@infor.org> (maintainer)
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- Passed maintainership to submitter
- Switched to BSD license to adhere to upstream package
PR: ports/151178
Submitted by: Carlo Strub <c-s at c-s dot li>
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Changes: https://code.zmaw.de/news/32
New features:
- Using libtool for linking (rpath)
- Changed predefined gaussian grid names from t<RES>grid to n<N>
- Use n80 instead of t106grid to define a Gaussian N80 grid
- Changed percentile parameter type from integer to float
New operators:
- bandpass: Bandpass filtering
- lowpass: Lowpass filtering
- highpass: Highpass filtering
Changed operators:
- eca_gsl: adjust implementation to fit definition by ECA
- expr, exprf: added missing values support
Fixed bugs:
- sellevel: copy zaxis meta data name and units
- seldate: open output file only when time steps found
Approved by: pgollucci (mentor)
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Approved by: pgollucci (mentor)
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Reported by: pointyhat via Erwin
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Reported by: pointyhat
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so standarize and remove it
With Hat: perl@
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With Hat: perl@
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Reported by: pointyhat, via Pav & Erwin
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ongoing cleanup to find sanity in the world.
Feature safe: yes (surprisingly)
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PR: ports/150855
Submitted by: maintainer
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Approved by: pgollucci (mentor)
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PR: ports/150665
Submitted by: KATO Tsuguru <tkato432 at yahoo.com>
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Approved by: portmgr (for Mk/bsd.port.mk part)
Tested by: Multiple -exp runs
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Chase goffice, and gnumeric version bumps.
Approved by: pav (maintainer)
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to physical quantities. This module allows you to manipulate these units,
generate new derived units from other units, and convert from one unit
to another.
WWW: http://search.cpan.org/dist/Physics-Unit/
PR: ports/150245
Submitted by: Frederic Culot <frederic@culot.org>
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set of examples of the basic sets of constants and procedures needed
to understand the behavior of matter.
WWW: http://www.toddmiller.com/epte/
PR: ports/150183
Submitted by: Frederic Culot <frederic@culot.org>
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Approved By: pgollucci (mentor)
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It still lacks scripting support and backward compatibility with kst 1.x series.
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- Pass maintainership to submitter
PR: ports/149822
Submitted by: C-S <c-s AT c-s.li>
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PR: ports/149801
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet dot net> (maintainer)
Approved by: beat (co-mentor)
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PR: ports/149760
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet dot net> (maintainer)
Approved by: miwi (mentor)
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PR: ports/149415
Submitted by: Frederic Culot <frederic AT culot.org>
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Suggested by: admi3
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PR: ports/149158
Submitted by: Frederic Culot <frederic@culot.org>
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PR: ports/149023
Submitted by: Timothy Beyer <beyert@cs.ucr.edu>
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PR: ports/148972
Submitted by: Chris Rees <utisoft@gmail.com> (maintainer)
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PR: ports/148906
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer)
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Add license.
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PR: ports/148721
Submitted by: Steve Wills <steve@stevenwills.com> (maintainer)
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PR: ports/146513
Approved by: pgj (mentor)
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files for elements and diagrams, and includes both a diagram editor and an
element editor.
WWW: http://qelectrotech.org/
PR: ports/146513
Submitted by: Gvozdikov Veniamin <g.veniamin at googlemail.com>
Approved by: tabthorpe (mentor)
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- un-IGNORE when WITH_PYTHON is defined
PR: ports/148399
Submitted by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
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PR: ports/148517
Submitted by: Chris Rees <utisoft gmail.com> (maintainer)
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Feature safe: yes
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- Reset maintainer to perl@
Feature safe: yes
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PR: ports/148226
Submitted by: Chris Rees <utisoft@gmail.com> (maintainer)
Feature safe: yes
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prone to hits from tropical systems (currently only in the Tropical
Atlantic). It's intended to display the NHC/TPC data and give you
what you need to make decisions, etc.. It does NOT, nor will it ever,
attempt to do any forecasting on its own---I leave that to the gurus
at the NHC/TPC.
WWW: http://www.jstrack.org/jstrack/
PR: ports/148208
Submitted by: Chris Rees <utisoft@gmail.com>
Feature safe: yes
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since Mk/bsd.gcc.mk has been rewriting the former to the later for a bit.)
Approved by: tkjacobsen@gmail.com (maintainer)
Feature safe: yes
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Feature safe: yes
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PR: ports/148064 (in follow-up)
Submitted by: Sunpoet Po-Chuan Hsieh (maintainer)
Feature safe: yes
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Pass maintainership to submitter
PR: ports/148064
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net>
Feature safe: yes
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Feature safe: yes
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- Update my email to FreeBSD
Feature safe: yes
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PR: ports/145939
Submitted by: Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Approved by: maintainer
Feature safe: yes
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PR: ports/147838
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PR: ports/147743
Submitted by: Rob Farmer <rfarmer@predatorlabs.net> (maintainer)
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PR: 146745
Submitted by: Stas Timokhin <devel@stasyan.com> (maintainer)
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PR: ports/147266
Submitted by: Stas Timokhin (maintainer)
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have enough power on the nodes, and this winds up slowing down our
builds.
Hat: portmgr
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- Remove USE_LDCONFIG
PR: ports/146795
Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com> (maintainer)
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audio/hs-ALUT, audio/hs-OpenAL, benchmarks/hs-criterion
converters/hs-json, devel/hs-DeepArrow, devel/hs-FileManip
devel/hs-MemoTrie, devel/hs-MissingH, devel/hs-MonadCatchIO-mtl
devel/hs-ObjectName, devel/hs-QuickCheck, devel/hs-StateVar
devel/hs-Tensor, devel/hs-TypeCompose, devel/hs-arrows
devel/hs-checkers, devel/hs-convertible, devel/hs-datetime
devel/hs-deepseq, devel/hs-fgl, devel/hs-ghc-mtl, devel/hs-ghc-paths
devel/hs-ghc-paths-docs, devel/hs-haskeline
devel/hs-haskell-src-exts, devel/hs-hint, devel/hs-hoogle
devel/hs-hslogger, devel/hs-mmap, devel/hs-mueval, devel/hs-reactive
devel/hs-readline, devel/hs-safe, devel/hs-show, devel/hs-smallcheck
devel/hs-split, devel/hs-testpack, devel/hs-transformers
devel/hs-unamb, devel/hs-uniplate, devel/hs-unix-compat
devel/hs-utility-ht, devel/hs-uuagc, devel/hs-uulib
devel/hs-uvector, devel/hs-uvector-algorithms, graphics/hs-HGL
lang/hs-brainfuck, lang/hs-unlambda, mail/hs-mime, math/hs-Agda
math/hs-Agda-executable, math/hs-category-extras, math/hs-erf
math/hs-mwc-random, math/hs-probability, math/hs-statistics
math/hs-vector-space, print/hs-hscolour, print/hs-hscolour-docs
science/hs-bio, textproc/hs-Diff, textproc/hs-feed
textproc/hs-tagsoup, textproc/hs-texmath, textproc/hs-xml
www/hs-HTTP, www/hs-cgi, www/hs-fastcgi, www/hs-http-server
www/hs-oeis, www/hs-scgi, www/hs-url, x11-toolkits/hs-GLURaw
x11-toolkits/hs-OpenGLRaw
Approved by: pgj (mentor)
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dependencies during the build.
Reported by: pointyhat via Pav
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PR: ports/146861
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
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Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net>
Approved by: maho
Notified by: pav
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Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net>
kVS: ----------------------------------------------------------------------
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support.
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net>
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- Port PORTREVISION
- Tidy up pkg-descr
Reported by: LambdaBSD-exp
Approved by: jacula (maintainer)
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package allowing the following:
* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.
PR: ports/146564
Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com>
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building neuronal network models.
WWW: http://neuralensemble.org/trac/PyNN
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Reviewed by: danfe@
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building neuronal network models.
WWW: http://neuralensemble.org/trac/PyNN
PR: ports/146664
Submitted by: Ju Pengfei <jupengfei@gmail.com>
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PR: ports/146620
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
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PR: ports/146416
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
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- Recall SZIP, fix typo (LIB_DEPEND -> LIB_DEPENDS)
- Sort pkg-plist
- Space/Tab twiddle
PR: 146416
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
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- Simplify NOPORTDOCS patch
- Remove NOPORTEXAMPLES section
- Remove unnecessary post-install: target
- Remove patch for fortran/cfortran.h
PR: ports/146415
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
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- Reset maintainer
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ports which makes possible the direct translation of Cabal package
descriptions to FreeBSD ports. It promises both easier addition and
maintenance for Cabal-based ports.
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problems. It uses the BDD package Buddy as a backend.
WWW: http://www.win.tue.nl/~wieger/bddsolve/
Submitted by: ed@
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release can be found at http://library.gnome.org/misc/release-notes/2.30/ .
This release brings initial PackageKit support, Upower (replaces power
management part of hal), cuse4bsd integration with HAL and cheese, and a
faster Evolution.
Sadly GNOME 2.30.x will be the last release with FreeBSD 6.X support. This
will also be the last of the 2.x releases. The next release will be the
highly-anticipated GNOME 3.0 which will bring with it a new UI experience.
Currently, there are a few bugs with GNOME 2.30 that may be of note for our
users. Be sure to consult the UPGRADING note or the 2.30 upgrade FAQ at
http://www.freebsd.org/gnome/docs/faq230.html for specific upgrading
instructions, and the up-to-date list of known issues.
This release features commits by avl, ahze, bland, marcus, mezz, and myself.
The FreeBSD GNOME Team would like to thank Anders F Bjorklund for doing the
initual packagekit porting.
And the following contributors & testers for there help with this release:
Eric L. Chen
Vladimir Grebenschikov
Sergio de Almeida Lenzi
DomiX
walder
crsd
Kevin Oberman
Michal Varga
Pavel Plesov
Bapt
kevin
and ITetcu for two exp-run
PR: ports/143852
ports/145347
ports/144980
ports/145830
ports/145511
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Submitted by: sunpoet@sunpoet.net (via email)
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- Update MASTER_SITES, WWW
PR: ports/146326
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
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Reported by: QAT
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PR: ports/144782
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
Approved by: koziol@hdfgroup.org (maintainer, implicit, timeout - 49 days)
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PR: ports/146127
Submitted by: Chris Petrik <chris@officialunix.com> (maintainer)
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Reported by: pointyhat via droso
Seen with: delphij
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PR: ports/144129
Submitted by: maintainer (Shin'ya Murakami)
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PR: ports/146008
Submitted by: Wen Heping (myself)
Approved by: maintainer
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Changelog at
<http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/changelog.en.html#3.5.1>.
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PR: ports/145923
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer)
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PR: ports/145255
Submitted by: Chris Petrik <chris at officialunix.com> (maintainer)
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PR: ports/145350
Submitted by: Steve Wills <steve@mouf.net> (maintainer)
Approved by: itetcu (mentor, implicit)
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WWW: http://search.cpan.org/dist/PerlMol/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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Specification) string.
WWW: http://search.cpan.org/dist/Chemistry-File-SMILES/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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coordinates and provides methods for converting them to Cartesian
coordinates.
WWW: http://search.cpan.org/dist/Chemistry-InternalCoords/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.
WWW: http://search.cpan.org/dist/Chemistry-File-SMARTS/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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connection table, such as that obtained by a 2D representation of the
molecule or from a SMILES string.
WWW: http://search.cpan.org/dist/Chemistry-3DBuilder/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net
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WWW: http://search.cpan.org/dist/Chemistry-File-SLN/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.
WWW: http://search.cpan.org/dist/Chemistry-File-SMARTS/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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WWW: http://search.cpan.org/dist/Chemistry-File-Mopac/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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WWW: http://search.cpan.org/dist/Chemistry-Raction/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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WWW: http://search.cpan.org/dist/Chemistry-ForumulaPattern/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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WWW: http://search.cpan.org/dist/Chemistry-MidasPattern/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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WWW: http://search.cpan.org/dist/Chemistry-Mok/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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WWW: http://search.cpan.org/dist/Chemistry-File-XYZ/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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WWW: http://search.cpan.org/dist/Chemistry-File-VRML/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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WWW: http://search.cpan.org/dist/Chemistry-Ring/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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WWW: http://search.cpan.org/dist/Chemistry-Isotope/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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WWW: http://search.cpan.org/dist/Chemistry-Pattern/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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structure; that is, to number the atoms in a unique way regardless of the
input order.
WWW: http://search.cpan.org/dist/Chemistry-Canonicalize/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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its 3D coordinates by using simple cutoffs, and for guessing the formal bond
orders.
WWW: http://search.cpan.org/dist/Chemistry-Bond-Find/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
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Hat: portmgr
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Reviewed by: exp8 run on pointyhat
Supported by: miwi
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Hat: portmgr
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Requested by: the maintainer
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PR: 144428
Submitted by: Ports Fury
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Reported by: pointyhat
Feature safe: yes
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Pass maintainership to submitter
Mark MAKE_JOBS_SAFE
PR: ports/144260
Submitted by: Stas Timokhin <devel at stasyan.com>
Feature safe: yes
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Feature safe: yes
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Feature safe: yes
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- Pass maintainer to submitter
PR: ports/142513
Submitted by: Ben Kaduk <kaduk@mit.edu>
Feature safe: yes
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Feature safe: yes
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Submitted by: Katsuya KANDA
Feature safe: yes
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Feature safe: yes.
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Feature safe: yes
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files, a Java package providing an object-oriented interface to HDF data
objects, and Java Native Interfaces to the standard HDF libraries.
WWW: http://www.hdfgroup.org/hdf-java-html/index.html
PR: ports/143859
Submitted by: rfarmer at predatorlabs.net
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- Update my mail address to FreeBSD
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PR: 143516
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer)
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